Wall clock time and date at job start Tue Mar 31 2020 11:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99616 * 2 1 4 4 C 1.53004 * 109.46795 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47067 * 64.99941 * 4 3 2 6 6 C 1.37095 * 120.00106 * 269.99905 * 5 4 3 7 7 H 1.08001 * 119.99683 * 145.15219 * 6 5 4 8 8 C 1.38946 * 120.00076 * 325.15099 * 6 5 4 9 9 N 1.31410 * 120.00083 * 337.38065 * 8 6 5 10 10 Si 1.86802 * 119.99773 * 157.38302 * 8 6 5 11 11 H 1.48501 * 109.47289 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47310 * 120.00409 * 10 8 6 13 13 H 1.48508 * 109.46766 * 239.99754 * 10 8 6 14 14 C 1.34773 * 119.99736 * 90.00063 * 5 4 3 15 15 O 1.21296 * 120.00360 * 4.90888 * 14 5 4 16 16 C 1.50708 * 120.00192 * 184.90880 * 14 5 4 17 17 C 1.50698 * 109.47236 * 180.26513 * 16 14 5 18 18 N 1.30239 * 126.11132 * 89.97463 * 17 16 14 19 19 N 1.39871 * 110.08931 * 179.97438 * 18 17 16 20 20 C 1.46500 * 125.46394 * 179.97438 * 19 18 17 21 21 C 1.37041 * 109.07293 * 359.97438 * 19 18 17 22 22 C 1.39291 * 133.84664 * 180.02562 * 21 19 18 23 23 C 1.36587 * 119.85118 * 179.97438 * 22 21 19 24 24 C 1.38960 * 120.81687 * 359.97438 * 23 22 21 25 25 C 1.36465 * 120.62942 * 0.02562 * 24 23 22 26 26 C 1.39948 * 119.63320 * 0.27136 * 25 24 23 27 27 H 1.08996 * 109.47047 * 299.99491 * 1 2 3 28 28 H 1.08996 * 109.47397 * 59.99603 * 1 2 3 29 29 H 1.09005 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46961 * 60.00730 * 3 2 1 31 31 H 1.08990 * 109.47364 * 300.00197 * 3 2 1 32 32 H 1.09004 * 109.46818 * 305.00141 * 4 3 2 33 33 H 1.08998 * 109.47099 * 185.00085 * 4 3 2 34 34 H 0.97002 * 119.99706 * 184.98875 * 9 8 6 35 35 H 1.09000 * 109.46864 * 60.25992 * 16 14 5 36 36 H 1.08992 * 109.46673 * 300.26509 * 16 14 5 37 37 H 1.08996 * 109.47116 * 270.02300 * 20 19 18 38 38 H 1.08996 * 109.46537 * 30.02764 * 20 19 18 39 39 H 1.09002 * 109.46640 * 150.02431 * 20 19 18 40 40 H 1.08007 * 120.07015 * 359.97438 * 22 21 19 41 41 H 1.08003 * 119.58756 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.68579 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.18455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0969 -0.7985 -1.3370 7 1 3.8634 -1.3052 -2.2617 8 6 4.5201 -1.5279 -0.2327 9 7 5.2133 -0.9403 0.7165 10 14 4.1036 -3.3439 -0.0975 11 1 3.3201 -3.7621 -1.2877 12 1 5.3580 -4.1355 -0.0268 13 1 3.3011 -3.5776 1.1300 14 6 4.2614 1.3338 -2.3217 15 8 4.2405 2.5425 -2.2221 16 6 4.6070 0.6925 -3.6410 17 6 4.8883 1.7643 -4.6623 18 7 6.0482 2.3016 -4.9115 19 7 5.9263 3.2605 -5.9224 20 6 7.0217 4.0686 -6.4640 21 6 4.6179 3.3230 -6.3249 22 6 3.9356 4.0795 -7.2749 23 6 2.5917 3.9052 -7.4454 24 6 1.8914 2.9792 -6.6817 25 6 2.5332 2.2240 -5.7437 26 6 3.9089 2.3886 -5.5458 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1766 0.0889 34 1 5.5706 -1.4637 1.4510 35 1 3.7702 0.0804 -3.9776 36 1 5.4901 0.0653 -3.5197 37 1 7.1105 4.9913 -5.8907 38 1 7.9541 3.5080 -6.3971 39 1 6.8154 4.3075 -7.5073 40 1 4.4682 4.8023 -7.8753 41 1 2.0670 4.4938 -8.1835 42 1 0.8290 2.8561 -6.8321 43 1 1.9818 1.5068 -5.1539 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421881453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:21 Heat of formation + Delta-G solvation = 21.471568 kcal Electronic energy + Delta-G solvation = -26805.498264 eV Core-core repulsion = 23045.969278 eV Total energy + Delta-G solvation = -3759.528986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98756 -38.59164 -37.03983 -36.85071 -34.69024 -33.65891 -31.52353 -30.30894 -30.17033 -29.53920 -28.45474 -25.83754 -25.32674 -24.53443 -22.75570 -22.02743 -21.53193 -19.69894 -18.86109 -17.06116 -16.74766 -16.42785 -16.14712 -15.39238 -15.35444 -15.09475 -15.03139 -14.45215 -14.34041 -14.15170 -13.90554 -13.75896 -13.51885 -12.97328 -12.72957 -12.57505 -12.30419 -11.93618 -11.83281 -11.66629 -11.38680 -11.23689 -11.13092 -10.96459 -10.90601 -10.81687 -10.60349 -10.28424 -10.19644 -10.00516 -9.67063 -9.11674 -8.94009 -8.47526 -8.33699 -7.57361 -7.43527 -6.27958 -3.91649 1.20390 1.72847 2.65475 2.84176 3.20051 3.31750 3.35134 3.91145 4.00396 4.21800 4.54547 4.61122 4.73266 4.83296 4.99020 5.11990 5.15298 5.23461 5.32965 5.43013 5.49299 5.56694 5.68931 5.74678 5.83279 5.95335 5.98975 6.00242 6.03717 6.09800 6.29184 6.33200 6.37355 6.42559 6.58094 6.70359 6.74234 6.86869 7.06855 7.30903 7.33511 7.56365 7.85441 8.04391 8.04857 8.43170 9.17832 9.56304 9.98354 10.75111 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.004086 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.285656 B = 6851.287217 C = 7645.027053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.110 3.890 5 N -0.428 5.428 6 C -0.328 4.328 7 H 0.089 0.911 8 C 0.053 3.947 9 N -0.863 5.863 10 Si 0.916 3.084 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.280 1.280 14 C 0.475 3.525 15 O -0.602 6.602 16 C -0.047 4.047 17 C 0.143 3.857 18 N -0.248 5.248 19 N -0.417 5.417 20 C 0.116 3.884 21 C 0.127 3.873 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.171 4.171 25 C -0.030 4.030 26 C -0.162 4.162 27 H 0.029 0.971 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.268 0.732 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 5.250 -11.570 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.014 4.014 5 N -0.146 5.146 6 C -0.455 4.455 7 H 0.107 0.893 8 C -0.153 4.153 9 N -0.500 5.500 10 Si 0.744 3.256 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.206 1.206 14 C 0.262 3.738 15 O -0.488 6.488 16 C -0.088 4.088 17 C -0.035 4.035 18 N -0.060 5.060 19 N -0.204 5.204 20 C -0.026 4.026 21 C 0.012 3.988 22 C -0.170 4.170 23 C -0.096 4.096 24 C -0.190 4.190 25 C -0.050 4.050 26 C -0.169 4.169 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.319 5.752 -11.047 12.889 hybrid contribution -1.174 -0.565 -0.004 1.302 sum -4.492 5.187 -11.051 13.008 Atomic orbital electron populations 1.22645 0.83609 1.01684 0.98777 1.88162 1.17179 1.27613 1.94999 1.23022 0.96547 0.84320 0.98408 1.21520 0.89222 0.99270 0.91393 1.43281 1.56095 1.06263 1.08912 1.19325 1.45787 0.80497 0.99936 0.89322 1.25206 0.94266 0.99815 0.96007 1.69831 1.30500 1.36784 1.12894 0.86059 0.78126 0.82746 0.78707 1.19244 1.21241 1.20596 1.19972 0.80863 0.86723 0.86192 1.90557 1.58082 1.14535 1.85600 1.19897 1.04394 0.94020 0.90536 1.23153 0.88797 0.96353 0.95212 1.76623 1.22911 1.02661 1.03756 1.48085 1.05244 1.34640 1.32417 1.21624 0.88672 0.94243 0.98080 1.18830 0.85424 0.97593 0.96959 1.19706 0.94591 1.02366 1.00357 1.20608 0.93171 0.97324 0.98486 1.20565 0.99934 0.99399 0.99151 1.20400 0.91688 0.97377 0.95539 1.19798 0.94860 1.01516 1.00765 0.95269 0.94999 0.90472 0.94374 0.94397 0.86432 0.91079 0.92125 0.88047 0.87314 0.91645 0.89668 0.90316 0.86322 0.85869 0.85984 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.64 10.18 -35.23 -0.36 -8.00 16 3 C 0.05 1.14 6.28 37.16 0.23 1.37 16 4 C 0.11 2.65 5.47 -4.04 -0.02 2.62 16 5 N -0.43 -10.71 2.52 -114.81 -0.29 -11.00 16 6 C -0.33 -8.21 8.19 -14.94 -0.12 -8.34 16 7 H 0.09 2.11 7.03 -52.49 -0.37 1.74 16 8 C 0.05 1.33 4.95 -17.47 -0.09 1.25 16 9 N -0.86 -22.91 11.34 55.50 0.63 -22.28 16 10 Si 0.92 19.95 29.61 -169.99 -5.03 14.92 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.47 11.67 7.62 -10.98 -0.08 11.59 16 15 O -0.60 -16.32 15.59 5.54 0.09 -16.23 16 16 C -0.05 -0.97 4.90 -29.03 -0.14 -1.11 16 17 C 0.14 2.94 5.93 -80.19 -0.48 2.47 16 18 N -0.25 -5.11 12.40 34.84 0.43 -4.68 16 19 N -0.42 -7.19 4.05 -65.47 -0.27 -7.45 16 20 C 0.12 1.35 11.40 59.85 0.68 2.03 16 21 C 0.13 2.15 6.87 -84.17 -0.58 1.57 16 22 C -0.15 -1.98 9.97 -39.79 -0.40 -2.37 16 23 C -0.08 -0.91 9.96 -39.91 -0.40 -1.30 16 24 C -0.17 -2.23 9.97 -39.95 -0.40 -2.63 16 25 C -0.03 -0.47 10.07 -39.58 -0.40 -0.87 16 26 C -0.16 -3.00 6.33 -105.20 -0.67 -3.66 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 3.04 5.37 -51.93 -0.28 2.76 16 33 H 0.07 1.74 7.36 -51.93 -0.38 1.36 16 34 H 0.27 6.74 8.32 -40.82 -0.34 6.41 16 35 H 0.10 1.86 7.81 -51.93 -0.41 1.46 16 36 H 0.11 2.24 8.03 -51.93 -0.42 1.82 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -33.14 367.18 -7.06 -40.21 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.06 Total: 4.77 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.74 Total: 4.21 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.51 Total: -45.41 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.27 Total: -24.23 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.14 -7.06 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421881453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.678 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds