Wall clock time and date at job start Tue Mar 31 2020 11:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99616 * 2 1 4 4 C 1.53004 * 109.46795 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47067 * 64.99941 * 4 3 2 6 6 C 1.37095 * 120.00106 * 269.99905 * 5 4 3 7 7 H 1.08001 * 119.99683 * 145.15219 * 6 5 4 8 8 C 1.38946 * 120.00076 * 325.15099 * 6 5 4 9 9 N 1.31410 * 120.00083 * 337.38065 * 8 6 5 10 10 Si 1.86802 * 119.99773 * 157.38302 * 8 6 5 11 11 H 1.48501 * 109.47289 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47310 * 120.00409 * 10 8 6 13 13 H 1.48508 * 109.46766 * 239.99754 * 10 8 6 14 14 C 1.34773 * 119.99736 * 90.00063 * 5 4 3 15 15 O 1.21296 * 120.00360 * 4.90888 * 14 5 4 16 16 C 1.50708 * 120.00192 * 184.90880 * 14 5 4 17 17 C 1.50698 * 109.47236 * 180.26513 * 16 14 5 18 18 N 1.30239 * 126.11132 * 89.97463 * 17 16 14 19 19 N 1.39871 * 110.08931 * 179.97438 * 18 17 16 20 20 C 1.46500 * 125.46394 * 179.97438 * 19 18 17 21 21 C 1.37041 * 109.07293 * 359.97438 * 19 18 17 22 22 C 1.39291 * 133.84664 * 180.02562 * 21 19 18 23 23 C 1.36587 * 119.85118 * 179.97438 * 22 21 19 24 24 C 1.38960 * 120.81687 * 359.97438 * 23 22 21 25 25 C 1.36465 * 120.62942 * 0.02562 * 24 23 22 26 26 C 1.39948 * 119.63320 * 0.27136 * 25 24 23 27 27 H 1.08996 * 109.47047 * 299.99491 * 1 2 3 28 28 H 1.08996 * 109.47397 * 59.99603 * 1 2 3 29 29 H 1.09005 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46961 * 60.00730 * 3 2 1 31 31 H 1.08990 * 109.47364 * 300.00197 * 3 2 1 32 32 H 1.09004 * 109.46818 * 305.00141 * 4 3 2 33 33 H 1.08998 * 109.47099 * 185.00085 * 4 3 2 34 34 H 0.97002 * 119.99706 * 184.98875 * 9 8 6 35 35 H 1.09000 * 109.46864 * 60.25992 * 16 14 5 36 36 H 1.08992 * 109.46673 * 300.26509 * 16 14 5 37 37 H 1.08996 * 109.47116 * 270.02300 * 20 19 18 38 38 H 1.08996 * 109.46537 * 30.02764 * 20 19 18 39 39 H 1.09002 * 109.46640 * 150.02431 * 20 19 18 40 40 H 1.08007 * 120.07015 * 359.97438 * 22 21 19 41 41 H 1.08003 * 119.58756 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.68579 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.18455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0969 -0.7985 -1.3370 7 1 3.8634 -1.3052 -2.2617 8 6 4.5201 -1.5279 -0.2327 9 7 5.2133 -0.9403 0.7165 10 14 4.1036 -3.3439 -0.0975 11 1 3.3201 -3.7621 -1.2877 12 1 5.3580 -4.1355 -0.0268 13 1 3.3011 -3.5776 1.1300 14 6 4.2614 1.3338 -2.3217 15 8 4.2405 2.5425 -2.2221 16 6 4.6070 0.6925 -3.6410 17 6 4.8883 1.7643 -4.6623 18 7 6.0482 2.3016 -4.9115 19 7 5.9263 3.2605 -5.9224 20 6 7.0217 4.0686 -6.4640 21 6 4.6179 3.3230 -6.3249 22 6 3.9356 4.0795 -7.2749 23 6 2.5917 3.9052 -7.4454 24 6 1.8914 2.9792 -6.6817 25 6 2.5332 2.2240 -5.7437 26 6 3.9089 2.3886 -5.5458 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1766 0.0889 34 1 5.5706 -1.4637 1.4510 35 1 3.7702 0.0804 -3.9776 36 1 5.4901 0.0653 -3.5197 37 1 7.1105 4.9913 -5.8907 38 1 7.9541 3.5080 -6.3971 39 1 6.8154 4.3075 -7.5073 40 1 4.4682 4.8023 -7.8753 41 1 2.0670 4.4938 -8.1835 42 1 0.8290 2.8561 -6.8321 43 1 1.9818 1.5068 -5.1539 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421881453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:20 Heat of formation + Delta-G solvation = 0.560960 kcal Electronic energy + Delta-G solvation = -26806.405016 eV Core-core repulsion = 23045.969278 eV Total energy + Delta-G solvation = -3760.435738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23268 -40.46365 -38.55044 -38.06983 -36.58043 -34.99715 -33.47998 -31.86447 -31.27790 -30.73549 -30.02277 -27.25861 -26.76236 -26.20958 -24.01214 -23.59070 -22.72739 -21.28271 -20.55641 -18.73277 -18.04247 -17.93808 -17.62548 -17.08867 -16.93151 -16.43120 -16.15706 -16.08412 -16.01372 -15.78555 -15.27505 -14.94541 -14.88963 -14.49512 -13.99469 -13.80952 -13.59169 -13.53721 -13.35547 -13.03633 -12.87800 -12.78468 -12.62597 -12.58801 -12.47633 -12.38948 -11.99813 -11.91400 -11.76551 -11.58321 -11.05496 -10.88541 -10.50278 -10.32633 -9.58634 -9.41613 -8.73762 -8.21804 -5.90977 0.04566 0.61972 1.42848 1.45693 1.54066 1.54992 1.65153 2.01754 2.39464 2.85453 3.00960 3.05564 3.25426 3.47958 3.59010 3.76956 4.15110 4.22982 4.24685 4.27773 4.37667 4.41832 4.49880 4.52409 4.55763 4.58594 4.60363 4.63900 4.64557 4.68491 4.78248 4.84359 4.91741 4.99396 5.13737 5.38628 5.44489 5.56046 5.62350 5.64852 5.97756 6.03397 6.22059 6.44698 6.47853 6.69709 7.21675 7.62683 8.04751 8.82347 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.004086 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.285656 B = 6851.287217 C = 7645.027053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.069 3.931 4 C 0.107 3.893 5 N -0.435 5.435 6 C -0.337 4.337 7 H 0.099 0.901 8 C 0.013 3.987 9 N -0.897 5.897 10 Si 0.979 3.021 11 H -0.256 1.256 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.466 3.534 15 O -0.634 6.634 16 C -0.035 4.035 17 C 0.116 3.884 18 N -0.286 5.286 19 N -0.419 5.419 20 C 0.105 3.895 21 C 0.107 3.893 22 C -0.147 4.147 23 C -0.066 4.066 24 C -0.160 4.160 25 C -0.057 4.057 26 C -0.196 4.196 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.270 0.730 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.154 0.846 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 5.639 -13.932 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C -0.009 4.009 4 C -0.017 4.017 5 N -0.153 5.153 6 C -0.464 4.464 7 H 0.117 0.883 8 C -0.190 4.190 9 N -0.535 5.535 10 Si 0.804 3.196 11 H -0.179 1.179 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.255 3.745 15 O -0.523 6.523 16 C -0.076 4.076 17 C -0.062 4.062 18 N -0.100 5.100 19 N -0.208 5.208 20 C -0.035 4.035 21 C -0.008 4.008 22 C -0.168 4.168 23 C -0.086 4.086 24 C -0.179 4.179 25 C -0.077 4.077 26 C -0.203 4.203 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.172 0.828 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.350 6.134 -13.421 15.696 hybrid contribution -0.588 -0.570 0.666 1.055 sum -5.938 5.564 -12.755 15.129 Atomic orbital electron populations 1.22896 0.80746 1.03347 1.00246 1.88089 1.20324 1.27440 1.95271 1.22749 0.94136 0.84764 0.99259 1.21461 0.91813 0.97739 0.90700 1.43504 1.55975 1.06571 1.09201 1.19638 1.45673 0.80582 1.00525 0.88342 1.25986 0.93789 1.03709 0.95507 1.69942 1.31597 1.38381 1.13587 0.85092 0.77841 0.77928 0.78720 1.17930 1.20947 1.20940 1.20577 0.80190 0.86451 0.87330 1.90510 1.59470 1.15969 1.86322 1.19724 1.04555 0.94298 0.89021 1.23101 0.89948 0.97070 0.96048 1.76441 1.23695 1.04244 1.05588 1.48419 1.06712 1.34105 1.31547 1.22023 0.87710 0.93771 1.00014 1.19320 0.85263 0.98228 0.97955 1.20202 0.95293 1.01990 0.99344 1.21173 0.92754 0.96453 0.98228 1.21020 1.01492 0.98005 0.97399 1.20598 0.90982 0.98915 0.97254 1.20063 0.96032 1.02740 1.01505 0.93276 0.93964 0.88778 0.91804 0.95038 0.88239 0.92822 0.92050 0.86263 0.88016 0.91036 0.89244 0.86643 0.82868 0.81368 0.82825 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.96 16 2 O -0.39 -16.37 10.18 -148.98 -1.52 -17.89 16 3 C 0.07 2.88 6.28 71.98 0.45 3.33 16 4 C 0.11 5.35 5.47 86.38 0.47 5.83 16 5 N -0.44 -22.60 2.52 -635.53 -1.60 -24.20 16 6 C -0.34 -17.20 8.19 84.04 0.69 -16.51 16 7 H 0.10 4.72 7.03 -2.91 -0.02 4.70 16 8 C 0.01 0.64 4.95 84.93 0.42 1.06 16 9 N -0.90 -48.91 11.34 21.66 0.25 -48.66 16 10 Si 0.98 40.94 29.61 68.60 2.03 42.98 16 11 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.47 23.96 7.62 87.66 0.67 24.63 16 15 O -0.63 -36.17 15.59 -3.08 -0.05 -36.22 16 16 C -0.03 -1.51 4.90 29.10 0.14 -1.37 16 17 C 0.12 4.97 5.93 44.79 0.27 5.23 16 18 N -0.29 -12.32 12.40 -43.69 -0.54 -12.86 16 19 N -0.42 -14.46 4.05 -361.05 -1.46 -15.92 16 20 C 0.10 2.32 11.40 127.77 1.46 3.78 16 21 C 0.11 3.54 6.87 39.21 0.27 3.81 16 22 C -0.15 -3.42 9.97 22.14 0.22 -3.20 16 23 C -0.07 -1.30 9.96 22.06 0.22 -1.08 16 24 C -0.16 -3.69 9.97 22.03 0.22 -3.47 16 25 C -0.06 -1.78 10.07 22.27 0.22 -1.56 16 26 C -0.20 -7.36 6.33 -20.24 -0.13 -7.49 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 2.45 8.14 -2.38 -0.02 2.44 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 5.37 5.37 -2.38 -0.01 5.36 16 33 H 0.05 2.79 7.36 -2.39 -0.02 2.78 16 34 H 0.27 13.90 8.32 -92.71 -0.77 13.13 16 35 H 0.12 4.57 7.81 -2.39 -0.02 4.55 16 36 H 0.10 4.45 8.03 -2.39 -0.02 4.43 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -75.58 367.18 4.96 -70.62 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 1.01 Total: 27.18 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.84 Total: 14.96 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -3.36 Total: -101.64 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -1.56 Total: -54.10 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.98 kcal Total: -75.58 4.96 -70.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421881453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.185 kcal (2) G-P(sol) polarization free energy of solvation -75.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds