Wall clock time and date at job start Tue Mar 31 2020 11:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46986 * 90.00315 * 7 6 5 9 9 N 1.29944 * 126.28635 * 269.68682 * 8 7 6 10 10 O 1.21302 * 110.24749 * 179.84206 * 9 8 7 11 11 C 1.33640 * 109.81676 * 0.42501 * 10 9 8 12 12 C 1.50694 * 126.55377 * 179.71494 * 11 10 9 13 13 H 1.08998 * 109.47107 * 165.02524 * 12 11 10 14 14 N 1.46897 * 109.47127 * 45.02591 * 12 11 10 15 15 C 1.53002 * 109.47262 * 285.02655 * 12 11 10 16 16 C 1.53002 * 109.47193 * 184.99979 * 15 12 11 17 17 C 1.50701 * 109.47183 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99623 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99873 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00284 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46849 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47037 * 119.99557 * 21 19 17 24 24 H 1.48494 * 109.47240 * 240.00095 * 21 19 17 25 25 N 1.31126 * 106.89176 * 359.73920 * 11 10 9 26 26 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 27 27 C 1.38137 * 120.05792 * 359.97438 * 26 6 5 28 28 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 29 29 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 31 31 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 32 32 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 33 33 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 34 34 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 35 35 H 1.00901 * 111.00240 * 176.04783 * 14 12 11 36 36 H 1.00901 * 111.00593 * 300.00086 * 14 12 11 37 37 H 1.08998 * 109.47100 * 305.00308 * 15 12 11 38 38 H 1.08999 * 109.47088 * 64.99942 * 15 12 11 39 39 H 1.09003 * 109.46905 * 300.00110 * 16 15 12 40 40 H 1.08999 * 109.47133 * 59.99991 * 16 15 12 41 41 H 0.97000 * 120.00017 * 180.02562 * 20 19 17 42 42 H 1.08007 * 119.96697 * 180.02562 * 26 6 5 43 43 H 1.08000 * 120.03391 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 6 4.2087 5.4633 -1.4333 9 7 5.2580 5.2195 -2.1600 10 8 5.1295 5.7115 -3.2612 11 6 3.9543 6.3426 -3.3412 12 6 3.4149 7.0874 -4.5350 13 1 2.3476 7.2636 -4.4014 14 7 3.6312 6.2890 -5.7489 15 6 4.1401 8.4278 -4.6702 16 6 3.5087 9.2371 -5.8048 17 6 4.2226 10.5576 -5.9376 18 1 5.0447 10.7956 -5.2789 19 6 3.8263 11.4619 -6.8999 20 7 2.8248 11.1722 -7.7017 21 14 4.7116 13.0985 -7.0650 22 1 5.7938 13.1802 -6.0513 23 1 5.2974 13.2093 -8.4251 24 1 3.7473 14.2069 -6.8494 25 7 3.3604 6.1903 -2.1821 26 6 1.9211 3.6048 -0.0001 27 6 1.2915 2.3752 0.0042 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.0209 0.3800 -0.0014 32 1 5.1345 2.5750 -0.0108 33 1 3.3600 5.7474 0.5041 34 1 4.9459 4.9394 0.4996 35 1 3.2210 6.7373 -6.5545 36 1 4.6137 6.1119 -5.8950 37 1 4.0542 8.9832 -3.7363 38 1 5.1925 8.2508 -4.8922 39 1 3.5946 8.6816 -6.7388 40 1 2.4563 9.4142 -5.5829 41 1 2.5462 11.8083 -8.3790 42 1 1.3342 4.5115 -0.0001 43 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424337680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:22 Heat of formation + Delta-G solvation = 39.380607 kcal Electronic energy + Delta-G solvation = -25089.966759 eV Core-core repulsion = 21331.214367 eV Total energy + Delta-G solvation = -3758.752392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.37116 -40.41825 -38.11227 -36.82969 -35.78101 -33.32386 -32.70472 -31.43018 -31.05313 -30.06141 -28.31508 -26.73956 -26.64043 -24.28123 -23.34684 -22.94450 -21.84539 -20.99622 -19.98316 -18.45549 -17.83983 -17.34991 -16.68069 -16.41158 -16.05592 -15.89891 -15.69866 -14.85686 -14.60250 -14.51260 -14.22355 -14.13681 -13.77309 -13.50697 -13.44041 -12.83194 -12.64555 -12.44647 -12.32889 -12.20573 -12.07521 -11.77118 -11.31071 -11.27491 -11.11027 -11.06500 -10.98346 -10.82214 -10.63490 -10.06848 -9.88885 -9.58460 -9.28229 -9.25577 -8.53195 -8.45730 -8.40819 -6.12060 -4.15119 1.05173 1.11031 1.37390 2.38955 2.95204 3.03864 3.24883 3.33071 3.36841 3.39051 3.78982 4.14048 4.37267 4.49530 4.57604 4.62691 4.73749 4.80010 4.87290 5.02159 5.08194 5.11791 5.17174 5.24543 5.29589 5.42296 5.45744 5.52605 5.61515 5.77527 5.86463 5.98884 6.07943 6.10675 6.28446 6.35951 6.41640 6.47428 6.77065 7.07667 7.21048 7.43809 7.55872 7.62852 7.84938 8.26244 8.34878 8.90620 9.50136 10.98914 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002167 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.565567 B =12916.322134 C =13324.197764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.153 4.153 5 C -0.066 4.066 6 C -0.123 4.123 7 C 0.019 3.981 8 C 0.172 3.828 9 N -0.389 5.389 10 O 0.076 5.924 11 C 0.216 3.784 12 C 0.180 3.820 13 H 0.122 0.878 14 N -0.840 5.840 15 C -0.143 4.143 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 N -0.485 5.485 26 C -0.059 4.059 27 C -0.208 4.208 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.366 0.634 36 H 0.344 0.656 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -19.380 15.850 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.172 4.172 5 C -0.084 4.084 6 C -0.125 4.125 7 C -0.020 4.020 8 C -0.101 4.101 9 N -0.099 5.099 10 O 0.020 5.980 11 C -0.005 4.005 12 C 0.067 3.933 13 H 0.140 0.860 14 N -0.374 5.374 15 C -0.183 4.183 16 C -0.012 4.012 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 N -0.219 5.219 26 C -0.077 4.077 27 C -0.227 4.227 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.148 0.852 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.691 -20.477 16.654 26.531 hybrid contribution 0.647 2.005 -0.701 2.220 sum -2.044 -18.472 15.952 24.492 Atomic orbital electron populations 1.23072 0.78273 1.03972 1.01528 1.86064 1.21512 1.26994 1.88669 1.19080 0.92404 0.84168 0.96103 1.20393 0.91371 0.98584 1.06810 1.20893 0.99989 0.90915 0.96586 1.19479 0.93707 0.93966 1.05313 1.18762 1.02386 0.94352 0.86494 1.25565 0.87342 0.97265 0.99955 1.74565 1.23438 1.18888 0.92983 1.85249 1.35950 1.50145 1.26694 1.29055 0.82454 0.92367 0.96629 1.20216 1.01044 0.89415 0.82669 0.86034 1.58972 1.21477 1.51145 1.05760 1.22536 0.99660 0.93363 1.02723 1.19109 0.96322 0.94263 0.91540 1.21181 1.16820 1.01119 1.17049 0.92568 1.25009 0.95080 0.98579 0.95661 1.69953 1.26997 1.36033 1.20140 0.86514 0.79687 0.83728 0.77969 1.19742 1.20926 1.20929 1.71842 1.29324 1.18536 1.02220 1.20907 0.93778 0.97430 0.95623 1.21229 1.00140 0.92204 1.09095 0.92479 0.88207 0.92583 0.85093 0.85136 0.87803 0.88310 0.81689 0.84343 0.91982 0.92208 0.96187 0.95996 0.92878 0.85180 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.20 10.50 -19.44 -0.20 -3.40 16 3 C 0.13 1.37 6.69 -39.22 -0.26 1.11 16 4 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 5 C -0.07 -0.69 9.69 -39.61 -0.38 -1.07 16 6 C -0.12 -1.36 5.12 -104.60 -0.54 -1.89 16 7 C 0.02 0.20 5.97 -29.03 -0.17 0.03 16 8 C 0.17 2.55 7.45 -156.37 -1.17 1.39 16 9 N -0.39 -6.26 12.16 30.90 0.38 -5.88 16 10 O 0.08 1.26 11.29 18.11 0.20 1.46 16 11 C 0.22 3.55 7.32 -13.06 -0.10 3.46 16 12 C 0.18 2.92 3.35 -68.87 -0.23 2.69 16 13 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 14 N -0.84 -12.49 9.17 -5.66 -0.05 -12.54 16 15 C -0.14 -2.68 4.78 -26.73 -0.13 -2.81 16 16 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 17 C -0.52 -14.04 9.11 -34.44 -0.31 -14.35 16 18 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 21 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 N -0.49 -7.96 11.55 -9.87 -0.11 -8.08 16 26 C -0.06 -0.63 9.69 -39.61 -0.38 -1.01 16 27 C -0.21 -2.09 9.04 -39.44 -0.36 -2.45 16 28 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.37 5.47 7.55 -39.29 -0.30 5.17 16 36 H 0.34 4.78 8.98 -39.29 -0.35 4.42 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.16 369.14 -8.07 -39.23 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.90 Total: 6.24 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.66 Total: -13.80 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.95 Total: -51.28 kcal Atomic # 8 Polarization: -1.94 SS G_CDS: 0.00 Total: -1.94 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.16 -8.07 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424337680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.610 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds