Wall clock time and date at job start Tue Mar 31 2020 11:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46986 * 90.00315 * 7 6 5 9 9 N 1.29944 * 126.28635 * 269.68682 * 8 7 6 10 10 O 1.21302 * 110.24749 * 179.84206 * 9 8 7 11 11 C 1.33640 * 109.81676 * 0.42501 * 10 9 8 12 12 C 1.50694 * 126.55377 * 179.71494 * 11 10 9 13 13 H 1.08998 * 109.47107 * 165.02524 * 12 11 10 14 14 N 1.46897 * 109.47127 * 45.02591 * 12 11 10 15 15 C 1.53002 * 109.47262 * 285.02655 * 12 11 10 16 16 C 1.53002 * 109.47193 * 184.99979 * 15 12 11 17 17 C 1.50701 * 109.47183 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99623 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99873 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00284 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46849 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47037 * 119.99557 * 21 19 17 24 24 H 1.48494 * 109.47240 * 240.00095 * 21 19 17 25 25 N 1.31126 * 106.89176 * 359.73920 * 11 10 9 26 26 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 27 27 C 1.38137 * 120.05792 * 359.97438 * 26 6 5 28 28 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 29 29 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 31 31 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 32 32 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 33 33 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 34 34 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 35 35 H 1.00901 * 111.00240 * 176.04783 * 14 12 11 36 36 H 1.00901 * 111.00593 * 300.00086 * 14 12 11 37 37 H 1.08998 * 109.47100 * 305.00308 * 15 12 11 38 38 H 1.08999 * 109.47088 * 64.99942 * 15 12 11 39 39 H 1.09003 * 109.46905 * 300.00110 * 16 15 12 40 40 H 1.08999 * 109.47133 * 59.99991 * 16 15 12 41 41 H 0.97000 * 120.00017 * 180.02562 * 20 19 17 42 42 H 1.08007 * 119.96697 * 180.02562 * 26 6 5 43 43 H 1.08000 * 120.03391 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 6 4.2087 5.4633 -1.4333 9 7 5.2580 5.2195 -2.1600 10 8 5.1295 5.7115 -3.2612 11 6 3.9543 6.3426 -3.3412 12 6 3.4149 7.0874 -4.5350 13 1 2.3476 7.2636 -4.4014 14 7 3.6312 6.2890 -5.7489 15 6 4.1401 8.4278 -4.6702 16 6 3.5087 9.2371 -5.8048 17 6 4.2226 10.5576 -5.9376 18 1 5.0447 10.7956 -5.2789 19 6 3.8263 11.4619 -6.8999 20 7 2.8248 11.1722 -7.7017 21 14 4.7116 13.0985 -7.0650 22 1 5.7938 13.1802 -6.0513 23 1 5.2974 13.2093 -8.4251 24 1 3.7473 14.2069 -6.8494 25 7 3.3604 6.1903 -2.1821 26 6 1.9211 3.6048 -0.0001 27 6 1.2915 2.3752 0.0042 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.0209 0.3800 -0.0014 32 1 5.1345 2.5750 -0.0108 33 1 3.3600 5.7474 0.5041 34 1 4.9459 4.9394 0.4996 35 1 3.2210 6.7373 -6.5545 36 1 4.6137 6.1119 -5.8950 37 1 4.0542 8.9832 -3.7363 38 1 5.1925 8.2508 -4.8922 39 1 3.5946 8.6816 -6.7388 40 1 2.4563 9.4142 -5.5829 41 1 2.5462 11.8083 -8.3790 42 1 1.3342 4.5115 -0.0001 43 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424337680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:21 Heat of formation + Delta-G solvation = 18.546906 kcal Electronic energy + Delta-G solvation = -25090.870176 eV Core-core repulsion = 21331.214367 eV Total energy + Delta-G solvation = -3759.655809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.59996 -41.14469 -38.86763 -38.26321 -36.93452 -35.13854 -33.89488 -32.36356 -32.02980 -31.68537 -28.98790 -28.24079 -27.49092 -25.94541 -24.55744 -23.74375 -23.03551 -22.23818 -21.28526 -19.19092 -19.06096 -18.79744 -18.25709 -17.45096 -17.14596 -16.68795 -16.50897 -16.45333 -16.00383 -15.47480 -15.32373 -15.09723 -14.95179 -14.72155 -14.48998 -14.16814 -13.93748 -13.47892 -13.39783 -13.27079 -13.09996 -12.96266 -12.79296 -12.71888 -12.49189 -12.29907 -12.08277 -11.96753 -11.81129 -11.76494 -11.53976 -11.30222 -10.96476 -10.55085 -10.02619 -9.83435 -9.18153 -8.20696 -6.30108 0.06733 0.29801 0.33379 1.20193 1.39805 1.41924 1.53134 1.75600 2.33166 2.40243 2.46724 2.73637 3.08930 3.13625 3.64792 3.75203 3.77710 3.87435 3.91879 4.02534 4.19659 4.20685 4.33885 4.36589 4.39413 4.50434 4.56416 4.65104 4.70155 4.72328 4.80275 4.83647 4.94503 5.03256 5.06726 5.21360 5.31613 5.48181 5.56811 5.66428 5.73176 5.81551 5.95830 6.21920 6.38232 6.41129 6.85077 7.11253 7.38843 8.90273 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002167 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.565567 B =12916.322134 C =13324.197764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.118 3.882 4 C -0.165 4.165 5 C -0.071 4.071 6 C -0.135 4.135 7 C 0.020 3.980 8 C 0.177 3.823 9 N -0.401 5.401 10 O 0.068 5.932 11 C 0.211 3.789 12 C 0.194 3.806 13 H 0.121 0.879 14 N -0.834 5.834 15 C -0.127 4.127 16 C 0.030 3.970 17 C -0.543 4.543 18 H 0.055 0.945 19 C 0.006 3.994 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.280 1.280 25 N -0.496 5.496 26 C -0.069 4.069 27 C -0.212 4.212 28 H 0.060 0.940 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.366 0.634 36 H 0.351 0.649 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.001 0.999 41 H 0.264 0.736 42 H 0.138 0.862 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -19.734 16.773 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.072 3.928 4 C -0.184 4.184 5 C -0.089 4.089 6 C -0.136 4.136 7 C -0.019 4.019 8 C -0.096 4.096 9 N -0.113 5.113 10 O 0.014 5.986 11 C -0.010 4.010 12 C 0.080 3.920 13 H 0.139 0.861 14 N -0.368 5.368 15 C -0.167 4.167 16 C -0.007 4.007 17 C -0.581 4.581 18 H 0.073 0.927 19 C -0.193 4.193 20 N -0.565 5.565 21 Si 0.783 3.217 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.206 1.206 25 N -0.231 5.231 26 C -0.087 4.087 27 C -0.231 4.231 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.495 -20.841 17.569 27.373 hybrid contribution 0.535 2.026 -0.950 2.300 sum -1.960 -18.816 16.619 25.181 Atomic orbital electron populations 1.23350 0.76439 1.05652 1.02221 1.86045 1.23492 1.26783 1.88555 1.19283 0.92748 0.84719 0.96014 1.20622 0.91764 0.99085 1.06930 1.21069 1.00630 0.90848 0.96333 1.19549 0.93982 0.94005 1.06076 1.18985 1.03821 0.94672 0.84401 1.26241 0.86378 0.95947 1.01054 1.74562 1.24111 1.19550 0.93027 1.85236 1.35891 1.50366 1.27128 1.28952 0.82711 0.92697 0.96663 1.19932 1.00529 0.88222 0.83362 0.86097 1.58962 1.22094 1.50445 1.05294 1.22276 0.99703 0.94182 1.00538 1.18969 0.95032 0.93778 0.92934 1.21623 1.16931 1.02660 1.16877 0.92713 1.25832 0.95854 1.02121 0.95489 1.70055 1.28330 1.37316 1.20805 0.85509 0.78634 0.79477 0.78099 1.19096 1.20380 1.20579 1.71862 1.29879 1.18969 1.02359 1.21100 0.93917 0.98009 0.95640 1.21454 1.01188 0.91818 1.08610 0.92175 0.86170 0.91437 0.84160 0.84087 0.86311 0.86440 0.81685 0.83538 0.92612 0.91833 0.96683 0.98102 0.92723 0.84462 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.34 10.50 -92.47 -0.97 -7.31 16 3 C 0.12 2.42 6.69 22.51 0.15 2.57 16 4 C -0.17 -3.34 9.99 22.37 0.22 -3.12 16 5 C -0.07 -1.41 9.69 22.25 0.22 -1.19 16 6 C -0.13 -2.78 5.12 -19.85 -0.10 -2.88 16 7 C 0.02 0.39 5.97 29.10 0.17 0.57 16 8 C 0.18 5.02 7.45 138.46 1.03 6.05 16 9 N -0.40 -12.45 12.16 -60.33 -0.73 -13.18 16 10 O 0.07 2.18 11.29 74.86 0.85 3.03 16 11 C 0.21 6.77 7.32 88.38 0.65 7.42 16 12 C 0.19 6.18 3.35 44.17 0.15 6.32 16 13 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 14 N -0.83 -24.24 9.17 -171.81 -1.58 -25.82 16 15 C -0.13 -4.73 4.78 30.60 0.15 -4.59 16 16 C 0.03 1.42 4.74 29.85 0.14 1.56 16 17 C -0.54 -29.15 9.11 25.60 0.23 -28.92 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -53.20 13.29 21.45 0.28 -52.92 16 21 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 N -0.50 -15.75 11.55 -303.23 -3.50 -19.26 16 26 C -0.07 -1.37 9.69 22.25 0.22 -1.16 16 27 C -0.21 -3.99 9.04 22.36 0.20 -3.79 16 28 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 29 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 31 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 32 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.12 2.01 8.08 -2.38 -0.02 1.99 16 34 H 0.12 1.89 8.08 -2.39 -0.02 1.87 16 35 H 0.37 10.81 7.55 -89.69 -0.68 10.13 16 36 H 0.35 9.45 8.98 -89.69 -0.81 8.64 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.01 0.71 6.87 -2.39 -0.02 0.70 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 Total: -1.00 -65.29 369.14 0.94 -64.35 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.43 Total: 25.28 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.00 Total: -19.09 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -5.53 Total: -111.17 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.13 Total: -4.29 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -65.29 0.94 -64.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424337680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.897 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds