Wall clock time and date at job start Tue Mar 31 2020 11:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46986 * 90.00315 * 7 6 5 9 9 N 1.29944 * 126.28635 * 269.68682 * 8 7 6 10 10 O 1.21302 * 110.24749 * 179.84206 * 9 8 7 11 11 C 1.33640 * 109.81676 * 0.42501 * 10 9 8 12 12 C 1.50697 * 126.55374 * 179.75564 * 11 10 9 13 13 H 1.08999 * 109.47060 * 194.97602 * 12 11 10 14 14 N 1.46896 * 109.47171 * 314.97773 * 12 11 10 15 15 C 1.53003 * 109.46966 * 74.97911 * 12 11 10 16 16 C 1.52994 * 109.46884 * 175.00143 * 15 12 11 17 17 C 1.50706 * 109.47028 * 179.97438 * 16 15 12 18 18 H 1.07995 * 119.99814 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00104 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99808 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46868 * 120.00108 * 21 19 17 24 24 H 1.48501 * 109.47192 * 239.99866 * 21 19 17 25 25 N 1.31126 * 106.89176 * 359.73920 * 11 10 9 26 26 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 27 27 C 1.38137 * 120.05792 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 29 29 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 30 30 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 32 32 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 33 33 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 34 34 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 35 35 H 1.00902 * 111.00550 * 60.00218 * 14 12 11 36 36 H 1.00902 * 111.00287 * 183.95467 * 14 12 11 37 37 H 1.09004 * 109.46796 * 294.99894 * 15 12 11 38 38 H 1.08997 * 109.47035 * 54.99771 * 15 12 11 39 39 H 1.09004 * 109.47201 * 299.99504 * 16 15 12 40 40 H 1.08997 * 109.47588 * 59.99967 * 16 15 12 41 41 H 0.97001 * 119.99777 * 179.97438 * 20 19 17 42 42 H 1.08007 * 119.96697 * 180.02562 * 26 6 5 43 43 H 1.08000 * 120.03391 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 6 4.2087 5.4633 -1.4333 9 7 5.2580 5.2195 -2.1600 10 8 5.1295 5.7115 -3.2612 11 6 3.9543 6.3426 -3.3412 12 6 3.4145 7.0867 -4.5353 13 1 2.5751 7.7096 -4.2262 14 7 4.4712 7.9351 -5.1023 15 6 2.9440 6.0841 -5.5910 16 6 2.2829 6.8349 -6.7485 17 6 1.8200 5.8474 -7.7886 18 1 1.9817 4.7902 -7.6391 19 6 1.1902 6.2938 -8.9310 20 7 0.9938 7.5813 -9.1132 21 14 0.6171 5.0698 -10.2205 22 1 0.9552 3.6924 -9.7805 23 1 -0.8531 5.1864 -10.3948 24 1 1.2929 5.3576 -11.5111 25 7 3.3604 6.1903 -2.1821 26 6 1.9211 3.6048 -0.0001 27 6 1.2915 2.3752 0.0042 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0209 0.3800 -0.0014 32 1 5.1345 2.5750 -0.0108 33 1 3.3600 5.7474 0.5041 34 1 4.9459 4.9394 0.4996 35 1 5.2612 7.3806 -5.3966 36 1 4.1169 8.4930 -5.8647 37 1 3.7996 5.5214 -5.9644 38 1 2.2244 5.3976 -5.1449 39 1 1.4272 7.3976 -6.3750 40 1 3.0025 7.5213 -7.1946 41 1 0.5510 7.8954 -9.9171 42 1 1.3342 4.5115 -0.0001 43 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424337686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:25 Heat of formation + Delta-G solvation = 39.359888 kcal Electronic energy + Delta-G solvation = -25346.681671 eV Core-core repulsion = 21587.928380 eV Total energy + Delta-G solvation = -3758.753291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.36810 -40.37031 -38.06965 -36.82843 -35.77196 -33.31842 -32.69225 -31.39408 -31.03191 -30.06094 -28.26922 -26.70225 -26.63759 -24.27869 -23.33706 -22.90594 -21.81458 -21.00634 -19.95466 -18.40357 -17.84799 -17.34460 -16.66960 -16.37532 -15.99712 -15.89574 -15.67738 -14.82305 -14.54713 -14.52604 -14.21182 -14.11606 -13.73304 -13.51310 -13.43050 -12.79649 -12.62750 -12.40539 -12.33803 -12.18011 -12.03863 -11.76703 -11.26765 -11.26025 -11.11077 -11.02129 -10.97644 -10.82124 -10.63463 -10.06646 -9.88780 -9.58287 -9.28100 -9.21298 -8.53549 -8.45743 -8.36236 -6.11981 -4.14951 1.08849 1.15164 1.38125 2.39435 3.00717 3.04105 3.24843 3.33034 3.37125 3.42069 3.80121 4.14659 4.37423 4.53921 4.60489 4.66823 4.78150 4.86359 4.89851 5.02829 5.12193 5.16940 5.20671 5.24671 5.31693 5.45460 5.45615 5.54099 5.61945 5.80935 5.87622 6.02393 6.10682 6.12878 6.28761 6.38919 6.42162 6.51648 6.77343 7.12675 7.20760 7.43930 7.55956 7.62682 7.85112 8.26529 8.35167 8.90776 9.50307 10.99007 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010527 B = 0.003085 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.105274 B = 9074.144793 C =11131.519213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.153 4.153 5 C -0.066 4.066 6 C -0.125 4.125 7 C 0.020 3.980 8 C 0.172 3.828 9 N -0.390 5.390 10 O 0.076 5.924 11 C 0.216 3.784 12 C 0.180 3.820 13 H 0.122 0.878 14 N -0.840 5.840 15 C -0.142 4.142 16 C 0.025 3.975 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 N -0.485 5.485 26 C -0.059 4.059 27 C -0.208 4.208 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.344 0.656 36 H 0.366 0.634 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.130 0.870 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -8.358 20.188 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.172 4.172 5 C -0.084 4.084 6 C -0.127 4.127 7 C -0.019 4.019 8 C -0.101 4.101 9 N -0.099 5.099 10 O 0.020 5.980 11 C -0.005 4.005 12 C 0.066 3.934 13 H 0.140 0.860 14 N -0.373 5.373 15 C -0.183 4.183 16 C -0.012 4.012 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 N -0.219 5.219 26 C -0.077 4.077 27 C -0.226 4.226 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.157 0.843 36 H 0.183 0.817 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.148 0.852 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.404 -8.473 21.377 23.245 hybrid contribution -0.888 -1.008 -1.892 2.320 sum 2.516 -9.481 19.485 21.814 Atomic orbital electron populations 1.23080 0.78228 1.03997 1.01570 1.86064 1.21548 1.26962 1.88623 1.19087 0.92409 0.84203 0.95962 1.20394 0.91386 0.98593 1.06817 1.20883 0.99948 0.90927 0.96656 1.19468 0.93709 0.93943 1.05536 1.18751 1.02320 0.94362 0.86451 1.25577 0.87286 0.97298 0.99972 1.74564 1.23454 1.18909 0.92952 1.85249 1.35963 1.50085 1.26751 1.29050 0.82405 0.92755 0.96306 1.20215 0.93624 0.93073 0.86438 0.85999 1.58978 1.09454 1.27485 1.41413 1.22529 1.01115 0.98135 0.96480 1.19106 0.95576 0.95540 0.90973 1.21185 1.38135 0.93338 1.03539 0.92596 1.25000 0.95811 0.95209 0.98240 1.69952 1.42715 1.12993 1.27459 0.86525 0.78474 0.81480 0.81494 1.19748 1.20917 1.20892 1.71841 1.29550 1.18664 1.01875 1.20904 0.93764 0.97441 0.95609 1.21241 1.00200 0.92209 1.08978 0.92595 0.92387 0.88203 0.85089 0.85160 0.87857 0.88345 0.84343 0.81691 0.92240 0.92055 0.95997 0.96178 0.92880 0.85178 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.48 10.50 -19.44 -0.20 -3.68 16 3 C 0.13 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.15 -1.72 9.99 -39.43 -0.39 -2.11 16 5 C -0.07 -0.73 9.69 -39.61 -0.38 -1.11 16 6 C -0.13 -1.43 5.12 -104.60 -0.54 -1.97 16 7 C 0.02 0.22 5.97 -29.03 -0.17 0.04 16 8 C 0.17 2.56 7.45 -156.37 -1.17 1.39 16 9 N -0.39 -6.27 12.16 30.90 0.38 -5.89 16 10 O 0.08 1.26 11.29 18.11 0.20 1.46 16 11 C 0.22 3.56 7.32 -13.06 -0.10 3.46 16 12 C 0.18 2.92 3.35 -68.87 -0.23 2.69 16 13 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 14 N -0.84 -12.36 9.17 -5.66 -0.05 -12.42 16 15 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 16 C 0.03 0.59 4.74 -27.88 -0.13 0.46 16 17 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 N -0.49 -7.97 11.55 -9.87 -0.11 -8.09 16 26 C -0.06 -0.66 9.69 -39.61 -0.38 -1.05 16 27 C -0.21 -2.26 9.04 -39.44 -0.36 -2.62 16 28 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 29 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.34 4.74 8.98 -39.29 -0.35 4.38 16 36 H 0.37 5.43 7.55 -39.29 -0.30 5.13 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.22 369.14 -8.07 -39.28 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.90 Total: 6.67 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.66 Total: -14.14 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.95 Total: -51.20 kcal Atomic # 8 Polarization: -2.22 SS G_CDS: 0.00 Total: -2.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.22 -8.07 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424337686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.642 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds