Wall clock time and date at job start Tue Mar 31 2020 11:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46986 * 90.00315 * 7 6 5 9 9 N 1.29944 * 126.28635 * 269.68682 * 8 7 6 10 10 O 1.21302 * 110.24749 * 179.84206 * 9 8 7 11 11 C 1.33640 * 109.81676 * 0.42501 * 10 9 8 12 12 C 1.50697 * 126.55374 * 179.75564 * 11 10 9 13 13 H 1.08999 * 109.47060 * 194.97602 * 12 11 10 14 14 N 1.46896 * 109.47171 * 314.97773 * 12 11 10 15 15 C 1.53003 * 109.46966 * 74.97911 * 12 11 10 16 16 C 1.52994 * 109.46884 * 175.00143 * 15 12 11 17 17 C 1.50706 * 109.47028 * 179.97438 * 16 15 12 18 18 H 1.07995 * 119.99814 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00104 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99808 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46868 * 120.00108 * 21 19 17 24 24 H 1.48501 * 109.47192 * 239.99866 * 21 19 17 25 25 N 1.31126 * 106.89176 * 359.73920 * 11 10 9 26 26 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 27 27 C 1.38137 * 120.05792 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 29 29 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 30 30 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 32 32 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 33 33 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 34 34 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 35 35 H 1.00902 * 111.00550 * 60.00218 * 14 12 11 36 36 H 1.00902 * 111.00287 * 183.95467 * 14 12 11 37 37 H 1.09004 * 109.46796 * 294.99894 * 15 12 11 38 38 H 1.08997 * 109.47035 * 54.99771 * 15 12 11 39 39 H 1.09004 * 109.47201 * 299.99504 * 16 15 12 40 40 H 1.08997 * 109.47588 * 59.99967 * 16 15 12 41 41 H 0.97001 * 119.99777 * 179.97438 * 20 19 17 42 42 H 1.08007 * 119.96697 * 180.02562 * 26 6 5 43 43 H 1.08000 * 120.03391 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 6 4.2087 5.4633 -1.4333 9 7 5.2580 5.2195 -2.1600 10 8 5.1295 5.7115 -3.2612 11 6 3.9543 6.3426 -3.3412 12 6 3.4145 7.0867 -4.5353 13 1 2.5751 7.7096 -4.2262 14 7 4.4712 7.9351 -5.1023 15 6 2.9440 6.0841 -5.5910 16 6 2.2829 6.8349 -6.7485 17 6 1.8200 5.8474 -7.7886 18 1 1.9817 4.7902 -7.6391 19 6 1.1902 6.2938 -8.9310 20 7 0.9938 7.5813 -9.1132 21 14 0.6171 5.0698 -10.2205 22 1 0.9552 3.6924 -9.7805 23 1 -0.8531 5.1864 -10.3948 24 1 1.2929 5.3576 -11.5111 25 7 3.3604 6.1903 -2.1821 26 6 1.9211 3.6048 -0.0001 27 6 1.2915 2.3752 0.0042 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0209 0.3800 -0.0014 32 1 5.1345 2.5750 -0.0108 33 1 3.3600 5.7474 0.5041 34 1 4.9459 4.9394 0.4996 35 1 5.2612 7.3806 -5.3966 36 1 4.1169 8.4930 -5.8647 37 1 3.7996 5.5214 -5.9644 38 1 2.2244 5.3976 -5.1449 39 1 1.4272 7.3976 -6.3750 40 1 3.0025 7.5213 -7.1946 41 1 0.5510 7.8954 -9.9171 42 1 1.3342 4.5115 -0.0001 43 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424337686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:24 Heat of formation + Delta-G solvation = 18.473515 kcal Electronic energy + Delta-G solvation = -25347.587372 eV Core-core repulsion = 21587.928380 eV Total energy + Delta-G solvation = -3759.658992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.59804 -41.15597 -38.87752 -38.26646 -36.93516 -35.14550 -33.89741 -32.36950 -32.03917 -31.68943 -28.99944 -28.24218 -27.50182 -25.94998 -24.55739 -23.75533 -23.03539 -22.27784 -21.26080 -19.19458 -19.07521 -18.81068 -18.25599 -17.45314 -17.15464 -16.70415 -16.53332 -16.45890 -15.97942 -15.48390 -15.33756 -15.09853 -14.95354 -14.74084 -14.50275 -14.17259 -13.94202 -13.48967 -13.40276 -13.27711 -13.10746 -12.96694 -12.76444 -12.75144 -12.50316 -12.30703 -12.07846 -11.98104 -11.82185 -11.78152 -11.55316 -11.31260 -10.96534 -10.55698 -10.03808 -9.83443 -9.19299 -8.21457 -6.30908 0.06482 0.29009 0.32217 1.20306 1.38895 1.41053 1.52254 1.75618 2.31674 2.39638 2.46214 2.73270 3.08971 3.12826 3.64784 3.74762 3.77406 3.86666 3.90883 4.01764 4.18722 4.19617 4.33065 4.34486 4.38090 4.50209 4.55658 4.64305 4.68793 4.70853 4.79371 4.83329 4.94378 5.02124 5.05292 5.20348 5.30651 5.46981 5.55321 5.65559 5.72433 5.80640 5.95858 6.21314 6.36576 6.41619 6.83968 7.11324 7.38065 8.89493 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010527 B = 0.003085 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.105274 B = 9074.144793 C =11131.519213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.116 3.884 4 C -0.167 4.167 5 C -0.071 4.071 6 C -0.135 4.135 7 C 0.021 3.979 8 C 0.177 3.823 9 N -0.401 5.401 10 O 0.068 5.932 11 C 0.211 3.789 12 C 0.194 3.806 13 H 0.123 0.877 14 N -0.832 5.832 15 C -0.126 4.126 16 C 0.031 3.969 17 C -0.545 4.545 18 H 0.052 0.948 19 C 0.008 3.992 20 N -0.924 5.924 21 Si 0.956 3.044 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.277 1.277 25 N -0.496 5.496 26 C -0.069 4.069 27 C -0.214 4.214 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.351 0.649 36 H 0.366 0.634 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.001 0.999 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.138 0.862 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 -9.132 20.870 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.071 3.929 4 C -0.185 4.185 5 C -0.089 4.089 6 C -0.137 4.137 7 C -0.017 4.017 8 C -0.096 4.096 9 N -0.112 5.112 10 O 0.014 5.986 11 C -0.010 4.010 12 C 0.080 3.920 13 H 0.140 0.860 14 N -0.366 5.366 15 C -0.167 4.167 16 C -0.006 4.006 17 C -0.583 4.583 18 H 0.071 0.929 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.781 3.219 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.202 1.202 25 N -0.231 5.231 26 C -0.087 4.087 27 C -0.233 4.233 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.020 0.980 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.156 0.844 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.408 -9.249 22.053 24.155 hybrid contribution -0.911 -0.805 -2.052 2.385 sum 2.497 -10.054 20.001 22.524 Atomic orbital electron populations 1.23342 0.76492 1.05624 1.02181 1.86042 1.23439 1.26820 1.88559 1.19307 0.92819 0.84718 0.96054 1.20637 0.91707 0.99197 1.06966 1.21085 1.00692 0.90802 0.96288 1.19572 0.93901 0.94176 1.06007 1.18983 1.03868 0.94482 0.84396 1.26249 0.86330 0.95992 1.01061 1.74562 1.24159 1.19502 0.93004 1.85236 1.35930 1.50288 1.27185 1.28946 0.82693 0.92954 0.96449 1.19929 0.94065 0.92228 0.85813 0.85963 1.58968 1.09126 1.27097 1.41409 1.22269 1.00530 0.98061 0.95817 1.18960 0.94914 0.95009 0.91730 1.21616 1.38194 0.93856 1.04607 0.92929 1.25805 0.96010 0.96909 1.00359 1.70049 1.43518 1.14599 1.28215 0.85534 0.78039 0.79332 0.78963 1.19268 1.20471 1.20248 1.71861 1.29985 1.19127 1.02089 1.21115 0.94027 0.97953 0.95621 1.21466 1.01175 0.91950 1.08664 0.91299 0.92403 0.86188 0.84172 0.83902 0.86143 0.86255 0.83536 0.81682 0.92006 0.93009 0.98033 0.96575 0.92678 0.84373 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.02 10.50 -92.47 -0.97 -7.99 16 3 C 0.12 2.61 6.69 22.51 0.15 2.76 16 4 C -0.17 -3.61 9.99 22.37 0.22 -3.38 16 5 C -0.07 -1.47 9.69 22.25 0.22 -1.26 16 6 C -0.14 -2.89 5.12 -19.85 -0.10 -2.99 16 7 C 0.02 0.42 5.97 29.10 0.17 0.59 16 8 C 0.18 4.99 7.45 138.46 1.03 6.02 16 9 N -0.40 -12.40 12.16 -60.33 -0.73 -13.13 16 10 O 0.07 2.17 11.29 74.86 0.85 3.02 16 11 C 0.21 6.76 7.32 88.38 0.65 7.41 16 12 C 0.19 6.18 3.35 44.17 0.15 6.32 16 13 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 14 N -0.83 -23.85 9.17 -171.81 -1.58 -25.43 16 15 C -0.13 -4.79 4.78 30.59 0.15 -4.65 16 16 C 0.03 1.47 4.74 29.85 0.14 1.61 16 17 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 18 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 19 C 0.01 0.44 5.46 84.65 0.46 0.90 16 20 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 21 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 N -0.50 -15.72 11.55 -303.23 -3.50 -19.22 16 26 C -0.07 -1.47 9.69 22.25 0.22 -1.25 16 27 C -0.21 -4.43 9.04 22.36 0.20 -4.23 16 28 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 29 H 0.06 0.75 7.67 -2.39 -0.02 0.73 16 30 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.12 1.97 8.08 -2.38 -0.02 1.95 16 34 H 0.12 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.35 9.33 8.98 -89.69 -0.81 8.52 16 36 H 0.37 10.68 7.55 -89.69 -0.68 10.00 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.02 0.77 6.87 -2.39 -0.02 0.75 16 41 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 43 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 Total: -1.00 -65.42 369.14 0.94 -64.48 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.43 Total: 26.09 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 5.00 Total: -20.03 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -5.53 Total: -110.59 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.13 Total: -4.97 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.42 0.94 -64.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424337686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.954 kcal (2) G-P(sol) polarization free energy of solvation -65.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds