Wall clock time and date at job start Tue Mar 31 2020 11:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00194 * 2 1 4 4 C 1.53000 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46992 * 64.99670 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 C 1.38363 * 119.84508 * 269.72211 * 7 6 5 9 9 C 1.37951 * 120.15015 * 179.76234 * 8 7 6 10 10 C 1.39628 * 119.84312 * 0.53678 * 9 8 7 11 11 C 1.43205 * 120.14838 * 179.69777 * 10 9 8 12 12 N 9.36416 * 154.55636 * 34.48230 * 3 1 2 13 13 C 1.39633 * 119.70478 * 359.72219 * 10 9 8 14 14 C 1.37956 * 119.83844 * 359.97438 * 13 10 9 15 15 C 1.34773 * 119.99969 * 269.72101 * 5 4 3 16 16 O 1.21593 * 119.99893 * 180.02562 * 15 5 4 17 17 N 1.34775 * 119.99959 * 0.02562 * 15 5 4 18 18 C 1.46507 * 119.99880 * 179.97438 * 17 15 5 19 19 C 1.50693 * 109.47245 * 179.97438 * 18 17 15 20 20 H 1.08007 * 120.00176 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00335 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00260 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99932 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46626 * 89.99658 * 23 21 19 25 25 H 1.48490 * 109.47210 * 209.99937 * 23 21 19 26 26 H 1.48501 * 109.46822 * 330.00407 * 23 21 19 27 27 H 1.09005 * 109.47031 * 300.00496 * 1 2 3 28 28 H 1.08996 * 109.47115 * 59.99818 * 1 2 3 29 29 H 1.08998 * 109.47832 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47320 * 59.99819 * 3 2 1 31 31 H 1.08998 * 109.46759 * 299.99542 * 3 2 1 32 32 H 1.09000 * 109.46884 * 305.00285 * 4 3 2 33 33 H 1.09000 * 109.46955 * 184.99601 * 4 3 2 34 34 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 35 35 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 36 36 H 1.08007 * 119.92714 * 0.02562 * 8 7 6 37 37 H 1.07996 * 120.07681 * 180.25658 * 9 8 7 38 38 H 1.07997 * 120.08115 * 179.97438 * 13 10 9 39 39 H 1.08005 * 119.91705 * 180.02562 * 14 13 10 40 40 H 0.96990 * 120.00509 * 359.97438 * 17 15 5 41 41 H 1.09004 * 109.46866 * 299.99680 * 18 17 15 42 42 H 1.09000 * 109.47163 * 59.99058 * 18 17 15 43 43 H 0.97009 * 119.99979 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2864 1.4004 -2.4149 7 6 5.7443 1.7807 -2.3846 8 6 6.1403 2.9398 -1.7410 9 6 7.4738 3.2914 -1.7053 10 6 8.4232 2.4805 -2.3302 11 6 9.8085 2.8427 -2.3027 12 7 10.9082 3.1295 -2.2777 13 6 8.0160 1.3150 -2.9825 14 6 6.6799 0.9721 -3.0051 15 6 4.1001 -0.7753 -1.3338 16 8 4.4659 -1.2901 -2.3729 17 7 3.8192 -1.5442 -0.2631 18 6 3.9540 -3.0004 -0.3514 19 6 3.5834 -3.6203 0.9712 20 1 3.2784 -2.9924 1.7953 21 6 3.6337 -4.9890 1.1293 22 7 3.3107 -5.5299 2.2837 23 14 4.1605 -6.0752 -0.2964 24 1 5.6327 -6.2656 -0.2557 25 1 3.4875 -7.3944 -0.1885 26 1 3.7803 -5.4286 -1.5780 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8514 0.5680 0.8409 33 1 3.9786 2.1764 0.0889 34 1 4.0745 0.8455 -3.3288 35 1 3.6750 2.3024 -2.3873 36 1 5.4043 3.5684 -1.2619 37 1 7.7821 4.1942 -1.1991 38 1 8.7451 0.6835 -3.4682 39 1 6.3635 0.0707 -3.5089 40 1 3.5278 -1.1336 0.5658 41 1 3.2915 -3.3800 -1.1294 42 1 4.9851 -3.2557 -0.5959 43 1 3.3457 -6.4930 2.3948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426424080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:12 Heat of formation + Delta-G solvation = -33.280923 kcal Electronic energy + Delta-G solvation = -26217.221697 eV Core-core repulsion = 22455.318465 eV Total energy + Delta-G solvation = -3761.903233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.28882 -40.18137 -38.66610 -37.67241 -36.50776 -35.97431 -34.36885 -33.02727 -31.98576 -30.57038 -29.86385 -27.48268 -26.98645 -24.31327 -23.93401 -23.53548 -22.97843 -20.77161 -19.87090 -19.44470 -18.31824 -17.73408 -17.17307 -16.96738 -16.49328 -16.36997 -16.25479 -15.95804 -15.58352 -15.43382 -15.23877 -15.00437 -14.75254 -14.41811 -14.33290 -14.24734 -13.94836 -13.83392 -13.52309 -13.20199 -13.12134 -12.94868 -12.80675 -12.65946 -12.52464 -12.44198 -11.97497 -11.88618 -11.87021 -11.55776 -11.01644 -10.86011 -10.45072 -9.92932 -9.90389 -9.78163 -9.31329 -8.34399 -6.39209 -0.24821 0.46813 1.35164 1.36838 1.50771 1.56942 1.74431 2.12250 2.32559 2.40547 2.84937 2.95149 3.01437 3.08323 3.34668 3.88890 3.90622 4.01827 4.21580 4.25419 4.33902 4.45516 4.52160 4.57592 4.62505 4.65599 4.73743 4.82023 4.83848 4.91827 4.96261 5.01792 5.12090 5.15172 5.29186 5.34108 5.38343 5.61393 5.74197 5.74708 5.92852 6.05377 6.30568 6.40277 6.45118 6.62135 7.22126 7.34284 7.85905 8.80611 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.003854 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.117190 B = 7263.228154 C = 9014.839323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.415 6.415 3 C 0.034 3.966 4 C 0.106 3.894 5 N -0.616 5.616 6 C 0.167 3.833 7 C -0.075 4.075 8 C -0.096 4.096 9 C -0.064 4.064 10 C -0.044 4.044 11 C 0.280 3.720 12 N -0.469 5.469 13 C -0.078 4.078 14 C -0.113 4.113 15 C 0.701 3.299 16 O -0.642 6.642 17 N -0.712 5.712 18 C 0.256 3.744 19 C -0.535 4.535 20 H 0.055 0.945 21 C 0.027 3.973 22 N -0.933 5.933 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.261 1.261 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.402 0.598 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 23.393 -7.131 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.334 6.334 3 C -0.043 4.043 4 C -0.017 4.017 5 N -0.352 5.352 6 C 0.044 3.956 7 C -0.078 4.078 8 C -0.114 4.114 9 C -0.084 4.084 10 C -0.048 4.048 11 C -0.034 4.034 12 N -0.145 5.145 13 C -0.098 4.098 14 C -0.131 4.131 15 C 0.403 3.597 16 O -0.525 6.525 17 N -0.366 5.366 18 C 0.132 3.868 19 C -0.573 4.573 20 H 0.073 0.927 21 C -0.173 4.173 22 N -0.573 5.573 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.199 1.199 26 H -0.186 1.186 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.192 0.808 37 H 0.176 0.824 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.239 0.761 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.124 23.109 -7.713 24.363 hybrid contribution -0.403 -1.151 -0.033 1.221 sum -0.527 21.958 -7.746 23.290 Atomic orbital electron populations 1.22719 0.80361 1.02315 1.00694 1.88017 1.20746 1.29143 1.95543 1.23275 0.93869 0.84866 1.02284 1.21934 0.92969 1.01437 0.85312 1.47021 1.70781 1.02885 1.14504 1.20430 0.91126 0.95596 0.88416 1.20723 0.96608 0.94625 0.95814 1.21336 0.96011 0.95952 0.98078 1.21455 0.92109 0.98828 0.96029 1.16113 0.84536 0.98416 1.05688 1.26031 0.92859 0.92288 0.92227 1.81299 1.12900 1.09926 1.10365 1.21226 0.96443 0.94869 0.97287 1.21168 0.92667 0.99491 0.99819 1.16112 0.78003 0.82283 0.83325 1.90793 1.56966 1.73830 1.30912 1.45133 1.70614 1.06874 1.13966 1.18817 0.94660 0.77789 0.95566 1.21244 1.46247 0.92768 0.97035 0.92725 1.25546 0.94483 0.99185 0.98092 1.69987 1.49423 1.12337 1.25508 0.85885 0.79269 0.78516 0.80356 1.19141 1.19880 1.18581 0.92577 0.93125 0.91532 0.89995 0.91416 0.91390 0.83956 0.90944 0.85037 0.80808 0.82383 0.85078 0.86608 0.76113 0.97903 0.97838 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -11.19 8.87 -148.98 -1.32 -12.51 16 3 C 0.03 0.55 6.28 71.98 0.45 1.00 16 4 C 0.11 1.76 5.71 86.38 0.49 2.25 16 5 N -0.62 -14.89 2.44 -844.18 -2.06 -16.94 16 6 C 0.17 2.93 5.52 85.63 0.47 3.40 16 7 C -0.08 -1.27 5.47 -19.81 -0.11 -1.38 16 8 C -0.10 -0.96 9.68 22.23 0.22 -0.74 16 9 C -0.06 -0.75 9.76 22.54 0.22 -0.53 16 10 C -0.04 -0.76 5.73 -21.36 -0.12 -0.89 16 11 C 0.28 6.01 15.33 88.32 1.35 7.36 16 12 N -0.47 -12.38 18.54 19.02 0.35 -12.02 16 13 C -0.08 -1.54 9.76 22.54 0.22 -1.32 16 14 C -0.11 -2.48 9.68 22.23 0.22 -2.27 16 15 C 0.70 26.47 7.90 179.06 1.41 27.88 16 16 O -0.64 -28.81 15.41 -4.01 -0.06 -28.87 16 17 N -0.71 -30.02 4.83 -482.29 -2.33 -32.35 16 18 C 0.26 13.12 4.50 85.63 0.38 13.50 16 19 C -0.53 -30.37 9.83 25.60 0.25 -30.12 16 20 H 0.05 3.29 7.84 -2.91 -0.02 3.26 16 21 C 0.03 1.54 5.47 84.65 0.46 2.00 16 22 N -0.93 -56.54 13.96 21.45 0.30 -56.24 16 23 Si 0.94 45.20 27.47 68.60 1.88 47.09 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.26 -12.61 6.54 99.48 0.65 -11.96 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.43 6.35 -2.39 -0.02 1.41 16 33 H 0.14 0.92 8.07 -2.39 -0.02 0.90 16 34 H 0.07 1.66 7.37 -2.39 -0.02 1.64 16 35 H 0.13 1.05 8.01 -2.38 -0.02 1.03 16 36 H 0.17 0.30 8.06 -2.91 -0.02 0.27 16 37 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.12 3.17 7.54 -2.91 -0.02 3.15 16 40 H 0.40 15.69 5.27 -92.72 -0.49 15.20 16 41 H 0.00 0.17 7.20 -2.38 -0.02 0.15 16 42 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 43 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -79.42 372.29 4.43 -74.99 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.49 Total: 14.69 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 7.18 Total: 22.17 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.73 Total: -117.55 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.38 Total: -41.39 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -79.42 4.43 -74.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.709 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds