Wall clock time and date at job start Tue Mar 31 2020 11:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21291 * 119.99875 * 2 1 4 4 N 1.34780 * 119.99957 * 179.97438 * 2 1 3 5 5 C 1.40090 * 119.99947 * 185.20553 * 4 2 1 6 6 C 1.38862 * 120.00359 * 213.88060 * 5 4 2 7 7 C 1.38058 * 119.99918 * 180.02562 * 6 5 4 8 8 C 1.38854 * 120.00341 * 0.02562 * 7 6 5 9 9 N 1.40110 * 120.00144 * 179.97438 * 8 7 6 10 10 C 1.34767 * 120.00016 * 33.87117 * 9 8 7 11 11 O 1.21588 * 120.00108 * 5.22690 * 10 9 8 12 12 N 1.34783 * 119.99842 * 185.22348 * 10 9 8 13 13 C 1.46506 * 119.99689 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46620 * 184.85395 * 13 12 10 15 15 C 1.50694 * 115.55093 * 303.68605 * 14 13 12 16 16 H 1.07993 * 120.00599 * 95.23321 * 15 14 13 17 17 C 1.37881 * 119.99805 * 274.95227 * 15 14 13 18 18 N 1.31515 * 120.00195 * 355.38718 * 17 15 14 19 19 Si 1.86798 * 120.00118 * 175.38076 * 17 15 14 20 20 H 1.48500 * 109.47217 * 60.00253 * 19 17 15 21 21 H 1.48498 * 109.47353 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47343 * 300.00491 * 19 17 15 23 23 C 1.52998 * 117.50034 * 89.35465 * 14 13 12 24 24 C 1.52997 * 117.49758 * 158.01518 * 14 13 12 25 25 C 1.38869 * 119.99695 * 0.23460 * 8 7 6 26 26 C 1.38053 * 120.00206 * 359.48740 * 25 8 7 27 27 H 1.08996 * 109.47142 * 240.00247 * 1 2 3 28 28 H 1.09000 * 109.46764 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46286 * 120.00300 * 1 2 3 30 30 H 0.96994 * 120.00111 * 5.21748 * 4 2 1 31 31 H 1.07997 * 120.00010 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.99685 * 179.97438 * 7 6 5 33 33 H 0.97005 * 119.99601 * 213.87891 * 9 8 7 34 34 H 0.96996 * 120.00170 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47314 * 64.85434 * 13 12 10 36 36 H 1.08999 * 109.46576 * 304.85164 * 13 12 10 37 37 H 0.96998 * 120.00327 * 184.99831 * 18 17 15 38 38 H 1.08994 * 117.50094 * 215.00165 * 23 14 13 39 39 H 1.09006 * 117.50034 * 0.02562 * 23 14 13 40 40 H 1.09007 * 117.50137 * 359.97438 * 24 14 13 41 41 H 1.08995 * 117.50095 * 144.97308 * 24 14 13 42 42 H 1.08005 * 119.99551 * 179.72698 * 25 8 7 43 43 H 1.07994 * 119.99966 * 180.25263 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5775 -1.1697 0.1106 6 6 4.3242 -2.1381 -0.5473 7 6 5.7004 -2.1408 -0.4383 8 6 6.3380 -1.1754 0.3295 9 7 7.7347 -1.1785 0.4405 10 6 8.4927 -1.5724 -0.6019 11 8 7.9708 -1.8340 -1.6684 12 7 9.8292 -1.6762 -0.4621 13 6 10.6532 -2.1038 -1.5954 14 6 12.1064 -2.2546 -1.1411 15 6 12.7225 -1.0295 -0.5164 16 1 12.7251 -0.9140 0.5573 17 6 13.2882 -0.0586 -1.3155 18 7 13.3717 -0.2428 -2.6150 19 14 13.9360 1.5185 -0.5524 20 1 15.0040 1.1925 0.4265 21 1 14.4900 2.3926 -1.6173 22 1 12.8284 2.2246 0.1404 23 6 12.5389 -3.6180 -0.5979 24 6 13.0178 -3.1560 -1.9764 25 6 5.5909 -0.2102 0.9918 26 6 4.2151 -0.2040 0.8783 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5139 -0.8900 30 1 1.6990 -2.0055 -0.0755 31 1 3.8283 -2.8892 -1.1442 32 1 6.2811 -2.8942 -0.9497 33 1 8.1561 -0.8971 1.2678 34 1 10.2455 -1.4677 0.3889 35 1 10.5959 -1.3580 -2.3882 36 1 10.2882 -3.0604 -1.9693 37 1 13.8339 0.4061 -3.1682 38 1 13.2691 -3.6287 0.2112 39 1 11.7883 -4.4077 -0.5646 40 1 12.5820 -3.6419 -2.8495 41 1 14.0629 -2.8626 -2.0745 42 1 6.0866 0.5380 1.5927 43 1 3.6344 0.5491 1.3901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431195645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:43 Heat of formation + Delta-G solvation = -11.040080 kcal Electronic energy + Delta-G solvation = -25350.629087 eV Core-core repulsion = 21589.690289 eV Total energy + Delta-G solvation = -3760.938797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72945 -39.93018 -38.23753 -36.78318 -35.31563 -33.73942 -33.24131 -31.99380 -30.92623 -30.59275 -28.05030 -26.11577 -25.13022 -23.33315 -22.36185 -21.20644 -20.90154 -20.13373 -19.43156 -17.99133 -17.90236 -17.39138 -17.06557 -16.05927 -15.72213 -15.12850 -14.72760 -14.69907 -14.50997 -14.30224 -13.90652 -13.82016 -13.44370 -13.30716 -13.12668 -12.99522 -12.69461 -12.60780 -12.44765 -11.95302 -11.62022 -11.28011 -11.01582 -10.98965 -10.86610 -10.56650 -10.25838 -10.21971 -9.83366 -9.53062 -9.38893 -9.07028 -8.88586 -8.52946 -8.36676 -8.10446 -7.57331 -6.10219 -4.20808 1.22128 1.46275 2.34515 2.82905 3.06917 3.24762 3.31351 3.32232 3.52817 3.96752 4.32128 4.39338 4.66454 4.81162 4.91582 4.93836 5.04537 5.17613 5.32391 5.35639 5.37171 5.49238 5.54929 5.82567 5.99211 6.08925 6.29283 6.30804 6.40060 6.44538 6.47827 6.52736 6.66426 6.69473 6.82286 7.10103 7.13419 7.15769 7.23667 7.32270 7.39742 7.55897 7.77726 7.86419 8.30423 8.50206 8.80521 9.02915 9.46817 10.96813 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.002496 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.411046 B =11217.486630 C =11986.885620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.506 3.494 3 O -0.526 6.526 4 N -0.672 5.672 5 C 0.111 3.889 6 C -0.122 4.122 7 C -0.103 4.103 8 C 0.171 3.829 9 N -0.693 5.693 10 C 0.695 3.305 11 O -0.587 6.587 12 N -0.711 5.711 13 C 0.181 3.819 14 C 0.023 3.977 15 C -0.503 4.503 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.873 5.873 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.211 4.211 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.098 4.098 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.406 0.594 34 H 0.400 0.600 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.713 -4.369 8.174 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.402 6.402 4 N -0.318 5.318 5 C 0.017 3.983 6 C -0.143 4.143 7 C -0.124 4.124 8 C 0.074 3.926 9 N -0.340 5.340 10 C 0.396 3.604 11 O -0.465 6.465 12 N -0.363 5.363 13 C 0.057 3.943 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.508 5.508 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.248 4.248 24 C -0.180 4.180 25 C -0.157 4.157 26 C -0.119 4.119 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.244 0.756 31 H 0.144 0.856 32 H 0.159 0.841 33 H 0.241 0.759 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.666 -3.734 6.970 23.064 hybrid contribution 0.684 0.756 0.953 1.396 sum -20.982 -2.979 7.923 22.625 Atomic orbital electron populations 1.21922 0.90949 1.05897 1.04446 1.20991 0.90808 0.83307 0.75496 1.90769 1.70583 1.31231 1.47579 1.43560 1.05421 1.09623 1.73227 1.17648 0.82365 0.98947 0.99303 1.20723 0.93500 1.00092 0.99979 1.21018 0.93401 0.98422 0.99564 1.17545 0.81989 0.94394 0.98663 1.42765 1.04100 1.70477 1.16691 1.16045 0.82194 0.78814 0.83380 1.90890 1.72538 1.57080 1.26011 1.45183 1.03659 1.70438 1.17032 1.20876 0.89296 0.97504 0.86623 1.19036 0.90045 0.89300 0.99384 1.20272 1.39218 1.02071 0.92462 0.92255 1.24994 0.95281 0.97989 0.94753 1.69971 1.40847 1.36007 1.04008 0.86689 0.79168 0.83425 0.78878 1.20283 1.21264 1.20150 1.23045 1.03819 0.99670 0.98265 1.22460 1.00669 1.03373 0.91479 1.20756 0.93530 0.97922 1.03522 1.20786 0.93853 0.98913 0.98301 0.89118 0.88668 0.89190 0.75553 0.85643 0.84087 0.75923 0.76520 0.91626 0.94146 0.92751 0.90422 0.91700 0.91769 0.89491 0.85408 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.32 36.01 0.37 -0.41 16 2 C 0.51 4.80 7.67 -10.98 -0.08 4.72 16 3 O -0.53 -7.57 14.81 5.55 0.08 -7.48 16 4 N -0.67 -5.71 5.34 -9.82 -0.05 -5.76 16 5 C 0.11 1.32 6.27 -83.62 -0.52 0.80 16 6 C -0.12 -1.48 9.96 -39.42 -0.39 -1.87 16 7 C -0.10 -1.52 8.65 -39.42 -0.34 -1.86 16 8 C 0.17 2.52 6.27 -83.61 -0.52 1.99 16 9 N -0.69 -10.34 5.35 -14.19 -0.08 -10.42 16 10 C 0.70 13.19 8.30 -86.92 -0.72 12.47 16 11 O -0.59 -13.08 14.06 5.29 0.07 -13.01 16 12 N -0.71 -13.69 5.43 -65.22 -0.35 -14.05 16 13 C 0.18 4.03 5.55 -4.04 -0.02 4.01 16 14 C 0.02 0.53 1.60 -155.66 -0.25 0.29 16 15 C -0.50 -12.62 8.16 -34.44 -0.28 -12.90 16 16 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 17 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 18 N -0.87 -24.01 12.65 55.43 0.70 -23.30 16 19 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.21 -4.33 9.93 -26.69 -0.27 -4.60 16 24 C -0.14 -3.21 9.17 -26.69 -0.24 -3.45 16 25 C -0.14 -1.78 9.96 -39.42 -0.39 -2.17 16 26 C -0.10 -1.27 8.65 -39.42 -0.34 -1.61 16 27 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.41 1.90 8.82 -40.82 -0.36 1.54 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.14 2.30 6.45 -52.49 -0.34 1.96 16 33 H 0.41 4.76 8.84 -40.82 -0.36 4.40 16 34 H 0.40 7.03 8.03 -40.82 -0.33 6.71 16 35 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 36 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 42 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.13 1.73 6.45 -52.49 -0.34 1.39 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -33.28 368.45 -9.12 -42.40 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -5.92 Total: 13.45 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -4.11 Total: -2.75 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.22 Total: -53.53 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.16 Total: -20.49 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.28 -9.12 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431195645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.364 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds