Wall clock time and date at job start Tue Mar 31 2020 11:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21291 * 119.99875 * 2 1 4 4 N 1.34780 * 119.99957 * 179.97438 * 2 1 3 5 5 C 1.40090 * 119.99947 * 185.20553 * 4 2 1 6 6 C 1.38862 * 120.00359 * 213.88060 * 5 4 2 7 7 C 1.38058 * 119.99918 * 180.02562 * 6 5 4 8 8 C 1.38854 * 120.00341 * 0.02562 * 7 6 5 9 9 N 1.40110 * 120.00144 * 179.97438 * 8 7 6 10 10 C 1.34767 * 120.00016 * 33.87117 * 9 8 7 11 11 O 1.21588 * 120.00108 * 5.22690 * 10 9 8 12 12 N 1.34783 * 119.99842 * 185.22348 * 10 9 8 13 13 C 1.46506 * 119.99689 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46620 * 184.85395 * 13 12 10 15 15 C 1.50694 * 115.55093 * 303.68605 * 14 13 12 16 16 H 1.07993 * 120.00599 * 95.23321 * 15 14 13 17 17 C 1.37881 * 119.99805 * 274.95227 * 15 14 13 18 18 N 1.31515 * 120.00195 * 355.38718 * 17 15 14 19 19 Si 1.86798 * 120.00118 * 175.38076 * 17 15 14 20 20 H 1.48500 * 109.47217 * 60.00253 * 19 17 15 21 21 H 1.48498 * 109.47353 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47343 * 300.00491 * 19 17 15 23 23 C 1.52998 * 117.50034 * 89.35465 * 14 13 12 24 24 C 1.52997 * 117.49758 * 158.01518 * 14 13 12 25 25 C 1.38869 * 119.99695 * 0.23460 * 8 7 6 26 26 C 1.38053 * 120.00206 * 359.48740 * 25 8 7 27 27 H 1.08996 * 109.47142 * 240.00247 * 1 2 3 28 28 H 1.09000 * 109.46764 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46286 * 120.00300 * 1 2 3 30 30 H 0.96994 * 120.00111 * 5.21748 * 4 2 1 31 31 H 1.07997 * 120.00010 * 0.02562 * 6 5 4 32 32 H 1.07998 * 119.99685 * 179.97438 * 7 6 5 33 33 H 0.97005 * 119.99601 * 213.87891 * 9 8 7 34 34 H 0.96996 * 120.00170 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47314 * 64.85434 * 13 12 10 36 36 H 1.08999 * 109.46576 * 304.85164 * 13 12 10 37 37 H 0.96998 * 120.00327 * 184.99831 * 18 17 15 38 38 H 1.08994 * 117.50094 * 215.00165 * 23 14 13 39 39 H 1.09006 * 117.50034 * 0.02562 * 23 14 13 40 40 H 1.09007 * 117.50137 * 359.97438 * 24 14 13 41 41 H 1.08995 * 117.50095 * 144.97308 * 24 14 13 42 42 H 1.08005 * 119.99551 * 179.72698 * 25 8 7 43 43 H 1.07994 * 119.99966 * 180.25263 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5775 -1.1697 0.1106 6 6 4.3242 -2.1381 -0.5473 7 6 5.7004 -2.1408 -0.4383 8 6 6.3380 -1.1754 0.3295 9 7 7.7347 -1.1785 0.4405 10 6 8.4927 -1.5724 -0.6019 11 8 7.9708 -1.8340 -1.6684 12 7 9.8292 -1.6762 -0.4621 13 6 10.6532 -2.1038 -1.5954 14 6 12.1064 -2.2546 -1.1411 15 6 12.7225 -1.0295 -0.5164 16 1 12.7251 -0.9140 0.5573 17 6 13.2882 -0.0586 -1.3155 18 7 13.3717 -0.2428 -2.6150 19 14 13.9360 1.5185 -0.5524 20 1 15.0040 1.1925 0.4265 21 1 14.4900 2.3926 -1.6173 22 1 12.8284 2.2246 0.1404 23 6 12.5389 -3.6180 -0.5979 24 6 13.0178 -3.1560 -1.9764 25 6 5.5909 -0.2102 0.9918 26 6 4.2151 -0.2040 0.8783 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5139 -0.8900 30 1 1.6990 -2.0055 -0.0755 31 1 3.8283 -2.8892 -1.1442 32 1 6.2811 -2.8942 -0.9497 33 1 8.1561 -0.8971 1.2678 34 1 10.2455 -1.4677 0.3889 35 1 10.5959 -1.3580 -2.3882 36 1 10.2882 -3.0604 -1.9693 37 1 13.8339 0.4061 -3.1682 38 1 13.2691 -3.6287 0.2112 39 1 11.7883 -4.4077 -0.5646 40 1 12.5820 -3.6419 -2.8495 41 1 14.0629 -2.8626 -2.0745 42 1 6.0866 0.5380 1.5927 43 1 3.6344 0.5491 1.3901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431195645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:40 Heat of formation + Delta-G solvation = -33.872361 kcal Electronic energy + Delta-G solvation = -25351.619169 eV Core-core repulsion = 21589.690289 eV Total energy + Delta-G solvation = -3761.928879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.78535 -41.10688 -39.41200 -38.46186 -36.40894 -35.15571 -34.56612 -33.94967 -31.95339 -31.25967 -29.09738 -27.83027 -26.89502 -24.39235 -23.40264 -22.90225 -22.04323 -21.41407 -21.12079 -19.36057 -18.85954 -18.66295 -17.88628 -17.81413 -16.77442 -16.60508 -16.31425 -16.15863 -15.77264 -15.48642 -15.17851 -15.08416 -14.71836 -14.45413 -14.32497 -14.08576 -13.85625 -13.69114 -13.46804 -13.24323 -13.01246 -12.93648 -12.79869 -12.39663 -12.29717 -12.00973 -11.95211 -11.48128 -11.28910 -11.04554 -10.93876 -10.50813 -10.43145 -10.10680 -9.91986 -9.81553 -8.65541 -8.08915 -6.23239 0.19934 0.41902 1.43312 1.45377 1.50965 1.56294 1.68513 2.08514 2.20427 2.42249 2.87193 3.18298 3.26486 3.58514 3.79527 3.98210 4.01091 4.25055 4.36191 4.43138 4.52877 4.55662 4.57428 4.67807 4.69137 4.73432 4.82200 4.98232 5.03478 5.06753 5.13106 5.30114 5.31079 5.36792 5.45425 5.52446 5.57711 5.63171 5.72331 5.78271 6.07142 6.08455 6.37140 6.48838 6.84500 7.10027 7.17888 7.46611 7.55002 8.97741 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.002496 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.411046 B =11217.486630 C =11986.885620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.581 6.581 4 N -0.660 5.660 5 C 0.116 3.884 6 C -0.119 4.119 7 C -0.119 4.119 8 C 0.144 3.856 9 N -0.676 5.676 10 C 0.696 3.304 11 O -0.623 6.623 12 N -0.707 5.707 13 C 0.198 3.802 14 C 0.001 3.999 15 C -0.503 4.503 16 H 0.066 0.934 17 C 0.025 3.975 18 N -0.907 5.907 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.294 1.294 22 H -0.271 1.271 23 C -0.177 4.177 24 C -0.153 4.153 25 C -0.131 4.131 26 C -0.110 4.110 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.430 0.570 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.421 0.579 34 H 0.410 0.590 35 H 0.024 0.976 36 H 0.043 0.957 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.145 0.855 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 -4.896 9.929 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.461 6.461 4 N -0.307 5.307 5 C 0.021 3.979 6 C -0.139 4.139 7 C -0.140 4.140 8 C 0.048 3.952 9 N -0.325 5.325 10 C 0.396 3.604 11 O -0.504 6.504 12 N -0.360 5.360 13 C 0.073 3.927 14 C 0.000 4.000 15 C -0.541 4.541 16 H 0.084 0.916 17 C -0.176 4.176 18 N -0.544 5.544 19 Si 0.775 3.225 20 H -0.194 1.194 21 H -0.221 1.221 22 H -0.196 1.196 23 C -0.214 4.214 24 C -0.191 4.191 25 C -0.152 4.152 26 C -0.130 4.130 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.134 0.866 30 H 0.269 0.731 31 H 0.171 0.829 32 H 0.139 0.861 33 H 0.259 0.741 34 H 0.246 0.754 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.163 0.837 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.875 -4.293 8.795 25.803 hybrid contribution 1.222 0.881 0.426 1.565 sum -22.653 -3.412 9.222 24.695 Atomic orbital electron populations 1.21947 0.86659 1.06484 1.06968 1.21964 0.92751 0.82402 0.73747 1.90750 1.72008 1.33161 1.50138 1.43559 1.04065 1.10760 1.72323 1.17784 0.84130 0.97951 0.98004 1.20921 0.92552 1.00647 0.99793 1.21018 0.94590 0.98432 0.99992 1.17721 0.81650 0.95586 1.00210 1.42478 1.04180 1.69558 1.16241 1.16126 0.82046 0.78535 0.83669 1.90863 1.73131 1.58632 1.27802 1.44944 1.03722 1.70733 1.16578 1.20456 0.89518 0.96254 0.86493 1.19084 0.90188 0.90086 1.00598 1.20607 1.38140 1.02534 0.92794 0.91568 1.25705 0.96060 1.00764 0.95105 1.70103 1.42222 1.36878 1.05218 0.85767 0.78781 0.80052 0.77924 1.19387 1.22064 1.19635 1.23027 1.03426 0.98256 0.96726 1.22383 0.99421 1.04221 0.93118 1.20902 0.93641 0.97620 1.03014 1.20929 0.93921 0.99340 0.98853 0.86307 0.89130 0.86637 0.73080 0.82904 0.86088 0.74090 0.75432 0.95788 0.93915 0.93274 0.89706 0.89360 0.91190 0.91683 0.83696 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.32 71.24 0.74 -0.20 16 2 C 0.50 8.50 7.67 87.66 0.67 9.18 16 3 O -0.58 -16.35 14.81 -3.06 -0.05 -16.39 16 4 N -0.66 -9.58 5.34 -303.37 -1.62 -11.20 16 5 C 0.12 2.58 6.27 38.12 0.24 2.82 16 6 C -0.12 -2.71 9.96 22.38 0.22 -2.49 16 7 C -0.12 -3.50 8.65 22.37 0.19 -3.30 16 8 C 0.14 4.19 6.27 38.12 0.24 4.43 16 9 N -0.68 -19.89 5.35 -317.06 -1.70 -21.59 16 10 C 0.70 26.57 8.30 179.06 1.49 28.05 16 11 O -0.62 -28.44 14.06 -3.99 -0.06 -28.50 16 12 N -0.71 -27.17 5.43 -478.52 -2.60 -29.76 16 13 C 0.20 8.95 5.55 86.38 0.48 9.43 16 14 C 0.00 0.06 1.60 -52.93 -0.08 -0.03 16 15 C -0.50 -25.09 8.16 25.60 0.21 -24.88 16 16 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16 17 C 0.02 1.29 5.43 84.66 0.46 1.75 16 18 N -0.91 -51.07 12.65 21.45 0.27 -50.80 16 19 Si 0.95 41.93 29.54 68.60 2.03 43.96 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.18 -6.98 9.93 30.62 0.30 -6.68 16 24 C -0.15 -6.95 9.17 30.62 0.28 -6.67 16 25 C -0.13 -3.31 9.96 22.38 0.22 -3.09 16 26 C -0.11 -2.75 8.65 22.38 0.19 -2.56 16 27 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.09 0.68 8.12 -2.39 -0.02 0.66 16 29 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.43 2.54 8.82 -92.71 -0.82 1.72 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.12 4.04 6.45 -2.91 -0.02 4.03 16 33 H 0.42 9.44 8.84 -92.70 -0.82 8.62 16 34 H 0.41 14.04 8.03 -92.71 -0.74 13.30 16 35 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 37 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 38 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 40 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 41 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.13 3.36 6.45 -2.91 -0.02 3.34 16 Total: -1.00 -74.14 368.45 0.82 -73.32 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -1.31 Total: 35.22 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 5.85 Total: 5.76 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -5.64 Total: -113.36 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.10 Total: -44.89 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.14 0.82 -73.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431195645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.448 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds