Wall clock time and date at job start Tue Mar 31 2020 11:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35930 * 117.00056 * 2 1 4 4 C 1.39136 * 119.78587 * 359.97438 * 3 2 1 5 5 C 1.38143 * 120.65468 * 179.76419 * 4 3 2 6 6 O 1.35906 * 120.14767 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99608 * 0.48346 * 6 5 4 8 8 C 1.40079 * 119.70394 * 0.50593 * 5 4 3 9 9 N 1.35945 * 121.35098 * 179.77493 * 8 5 4 10 10 C 1.29605 * 122.17400 * 179.72202 * 9 8 5 11 11 N 1.36242 * 123.33278 * 359.97438 * 10 9 8 12 12 H 0.96998 * 119.96674 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.07251 * 0.02562 * 11 10 9 14 14 N 1.30748 * 121.43561 * 179.97438 * 13 11 10 15 15 C 1.46497 * 119.99873 * 354.00548 * 14 13 11 16 16 C 1.53007 * 109.46990 * 114.47779 * 15 14 13 17 17 C 1.53003 * 109.46793 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46801 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99980 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99908 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99755 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47436 * 90.00204 * 22 20 18 24 24 H 1.48509 * 109.46733 * 209.99832 * 22 20 18 25 25 H 1.48498 * 109.47675 * 329.99642 * 22 20 18 26 26 C 1.40926 * 119.34673 * 359.49746 * 8 5 4 27 27 C 1.38416 * 119.79279 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47054 * 60.00425 * 1 2 3 29 29 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47199 * 299.99934 * 1 2 3 31 31 H 1.07994 * 119.67163 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.47160 * 299.99842 * 7 6 5 33 33 H 1.08994 * 109.47187 * 60.00191 * 7 6 5 34 34 H 1.08999 * 109.46808 * 180.02562 * 7 6 5 35 35 H 1.08001 * 118.33300 * 179.97438 * 10 9 8 36 36 H 1.09005 * 109.47016 * 234.47360 * 15 14 13 37 37 H 1.09000 * 109.47553 * 354.47771 * 15 14 13 38 38 H 1.08996 * 109.46635 * 299.99628 * 16 15 14 39 39 H 1.08993 * 109.47189 * 59.99961 * 16 15 14 40 40 H 1.09000 * 109.47197 * 300.00118 * 17 16 15 41 41 H 1.09000 * 109.47420 * 60.00194 * 17 16 15 42 42 H 0.96996 * 119.99970 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.18812 * 359.96130 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2840 2.3752 -0.0005 5 6 1.8924 3.6154 0.0043 6 8 1.1380 4.7458 0.0043 7 6 -0.2812 4.5785 0.0098 8 6 3.2905 3.7027 -0.0009 9 7 3.9241 4.9055 -0.0009 10 6 5.2163 5.0049 -0.0003 11 7 6.0500 3.9273 0.0008 12 1 7.0111 4.0583 0.0008 13 6 5.5274 2.6466 0.0009 14 7 6.3027 1.5938 0.0015 15 6 7.7531 1.7521 -0.1304 16 6 8.4354 1.2958 1.1608 17 6 9.9503 1.4606 1.0228 18 6 10.6223 1.0117 2.2947 19 1 10.0284 0.6452 3.1189 20 6 11.9954 1.0690 2.4063 21 7 12.7187 1.5149 1.4024 22 14 12.8284 0.5120 3.9827 23 1 13.1449 -0.9359 3.8904 24 1 14.0835 1.2815 4.1779 25 1 11.9194 0.7477 5.1330 26 6 4.0564 2.5198 -0.0002 27 6 3.4287 1.2786 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2061 2.3085 -0.0005 32 1 -0.5850 4.0235 -0.8778 33 1 -0.5787 4.0279 0.9021 34 1 -0.7623 5.5566 0.0087 35 1 5.6545 5.9920 -0.0008 36 1 8.1103 1.1469 -0.9636 37 1 7.9889 2.8001 -0.3152 38 1 8.0782 1.9010 1.9939 39 1 8.1997 0.2478 1.3456 40 1 10.3072 0.8551 0.1896 41 1 10.1865 2.5085 0.8378 42 1 13.6846 1.5555 1.4810 43 1 4.0166 0.3726 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433041606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:39 Heat of formation + Delta-G solvation = -6.459449 kcal Electronic energy + Delta-G solvation = -25478.155907 eV Core-core repulsion = 21717.415741 eV Total energy + Delta-G solvation = -3760.740166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24646 -39.77019 -39.02161 -36.58422 -35.91583 -33.98502 -32.50437 -31.57368 -30.40796 -29.46594 -28.33408 -26.90101 -26.68583 -24.23180 -23.87390 -22.58325 -21.28363 -20.23418 -19.48417 -18.76923 -18.14159 -17.26215 -16.81520 -16.28987 -16.12673 -15.75258 -15.74902 -14.96600 -14.91376 -14.83941 -14.53827 -14.41832 -13.85060 -13.74463 -13.01020 -12.90666 -12.60306 -12.49229 -12.26195 -11.92718 -11.76829 -11.65977 -11.54810 -11.29750 -10.95938 -10.90623 -10.71246 -10.56686 -9.99861 -9.78673 -9.54958 -9.38510 -9.18766 -9.10581 -8.38510 -8.36726 -7.26949 -6.01886 -4.04090 0.54489 0.86731 2.26015 2.68995 2.77006 2.93997 3.10561 3.31704 3.37710 3.41651 3.91854 4.03588 4.06809 4.45233 4.56222 4.62079 4.70724 4.80223 4.82309 4.87315 4.91982 5.07604 5.11816 5.14862 5.17088 5.33971 5.38624 5.54049 5.70565 5.94015 5.97633 6.09419 6.17457 6.24061 6.43702 6.65113 6.78227 6.90579 7.03227 7.09752 7.20269 7.63635 7.76366 7.97178 7.99290 8.12663 8.41202 9.02575 9.60150 11.09420 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002507 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.941120 B =11167.872748 C =12057.695982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.148 3.852 4 C -0.272 4.272 5 C 0.177 3.823 6 O -0.290 6.290 7 C 0.023 3.977 8 C 0.078 3.922 9 N -0.525 5.525 10 C 0.368 3.632 11 N -0.681 5.681 12 H 0.420 0.580 13 C 0.390 3.610 14 N -0.542 5.542 15 C 0.048 3.952 16 C -0.102 4.102 17 C 0.023 3.977 18 C -0.520 4.520 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.027 4.027 27 C -0.118 4.118 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.140 0.860 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.195 0.805 36 H 0.086 0.914 37 H 0.030 0.970 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.951 5.850 -5.606 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.102 3.898 4 C -0.293 4.293 5 C 0.129 3.871 6 O -0.202 6.202 7 C -0.072 4.072 8 C -0.031 4.031 9 N -0.246 5.246 10 C 0.077 3.923 11 N -0.317 5.317 12 H 0.261 0.739 13 C 0.116 3.884 14 N -0.265 5.265 15 C -0.081 4.081 16 C -0.141 4.141 17 C -0.015 4.015 18 C -0.558 4.558 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.033 4.033 27 C -0.139 4.139 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.211 0.789 36 H 0.104 0.896 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.321 5.458 -5.611 29.383 hybrid contribution 1.358 -0.146 0.811 1.589 sum -26.962 5.312 -4.800 27.897 Atomic orbital electron populations 1.23077 0.78493 1.04133 1.01182 1.86136 1.21246 1.26307 1.88480 1.18541 0.91603 0.83668 0.95981 1.21212 1.00664 0.91450 1.15961 1.18078 0.88599 0.85025 0.95391 1.86237 1.18026 1.28151 1.87751 1.23115 0.79059 1.03969 1.01089 1.17599 0.90541 0.88521 1.06438 1.68389 1.07382 1.24623 1.24161 1.24480 0.86644 0.92141 0.89005 1.44247 1.11812 1.05838 1.69826 0.73938 1.20782 0.92081 0.80882 0.94663 1.72880 1.07061 1.24803 1.21712 1.22253 0.85478 0.99055 1.01320 1.21677 0.98278 1.00835 0.93272 1.19092 0.88039 0.97004 0.97371 1.21230 0.91635 1.42624 1.00300 0.92680 1.25023 0.97578 0.95357 0.96502 1.69958 1.05768 1.46836 1.30999 0.86584 0.78928 0.78731 0.83722 1.20597 1.21208 1.19885 1.18395 0.89004 0.93084 1.02795 1.20104 0.90919 0.98091 1.04774 0.92710 0.88014 0.92675 0.84271 0.92787 0.92750 0.87973 0.78854 0.89571 0.95188 0.93715 0.92238 0.96384 0.96796 0.92991 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.80 101.05 0.99 1.15 16 2 O -0.31 -3.37 10.49 -19.52 -0.20 -3.57 16 3 C 0.15 1.79 6.68 -39.18 -0.26 1.53 16 4 C -0.27 -2.88 8.02 -39.28 -0.31 -3.19 16 5 C 0.18 2.22 6.72 -38.93 -0.26 1.96 16 6 O -0.29 -3.32 10.30 -19.44 -0.20 -3.52 16 7 C 0.02 0.15 9.81 101.05 0.99 1.14 16 8 C 0.08 1.11 6.64 -84.34 -0.56 0.55 16 9 N -0.52 -7.12 10.13 -11.88 -0.12 -7.24 16 10 C 0.37 4.02 12.30 -90.01 -1.11 2.91 16 11 N -0.68 -8.54 5.30 -11.62 -0.06 -8.60 16 12 H 0.42 4.78 6.42 -40.82 -0.26 4.52 16 13 C 0.39 6.04 7.69 -153.56 -1.18 4.86 16 14 N -0.54 -9.42 9.98 -58.35 -0.58 -10.00 16 15 C 0.05 0.86 6.29 -4.04 -0.03 0.84 16 16 C -0.10 -2.20 5.48 -26.73 -0.15 -2.34 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 18 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 19 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.03 -0.41 5.90 -104.72 -0.62 -1.02 16 27 C -0.12 -1.66 9.59 -39.20 -0.38 -2.03 16 28 H 0.05 0.27 7.64 -51.93 -0.40 -0.13 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.14 1.02 4.44 -52.49 -0.23 0.79 16 32 H 0.05 0.27 7.64 -51.93 -0.40 -0.12 16 33 H 0.05 0.28 7.68 -51.93 -0.40 -0.12 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.03 0.48 5.61 -51.93 -0.29 0.19 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.15 2.22 7.75 -52.49 -0.41 1.82 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -35.24 360.72 -9.14 -44.38 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.71 Total: -0.65 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.42 Total: -6.89 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.03 Total: -52.03 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.40 Total: -7.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.24 -9.14 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433041606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.919 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds