Wall clock time and date at job start Tue Mar 31 2020 11:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35930 * 117.00056 * 2 1 4 4 C 1.39136 * 119.78587 * 359.97438 * 3 2 1 5 5 C 1.38143 * 120.65468 * 179.76419 * 4 3 2 6 6 O 1.35906 * 120.14767 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99608 * 0.48346 * 6 5 4 8 8 C 1.40079 * 119.70394 * 0.50593 * 5 4 3 9 9 N 1.35945 * 121.35098 * 179.77493 * 8 5 4 10 10 C 1.29605 * 122.17400 * 179.72202 * 9 8 5 11 11 N 1.36242 * 123.33278 * 359.97438 * 10 9 8 12 12 H 0.96998 * 119.96674 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.07251 * 0.02562 * 11 10 9 14 14 N 1.30748 * 121.43561 * 179.97438 * 13 11 10 15 15 C 1.46497 * 119.99873 * 354.00548 * 14 13 11 16 16 C 1.53007 * 109.46990 * 114.47779 * 15 14 13 17 17 C 1.53003 * 109.46793 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46801 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99980 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99908 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99755 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47436 * 90.00204 * 22 20 18 24 24 H 1.48509 * 109.46733 * 209.99832 * 22 20 18 25 25 H 1.48498 * 109.47675 * 329.99642 * 22 20 18 26 26 C 1.40926 * 119.34673 * 359.49746 * 8 5 4 27 27 C 1.38416 * 119.79279 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47054 * 60.00425 * 1 2 3 29 29 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47199 * 299.99934 * 1 2 3 31 31 H 1.07994 * 119.67163 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.47160 * 299.99842 * 7 6 5 33 33 H 1.08994 * 109.47187 * 60.00191 * 7 6 5 34 34 H 1.08999 * 109.46808 * 180.02562 * 7 6 5 35 35 H 1.08001 * 118.33300 * 179.97438 * 10 9 8 36 36 H 1.09005 * 109.47016 * 234.47360 * 15 14 13 37 37 H 1.09000 * 109.47553 * 354.47771 * 15 14 13 38 38 H 1.08996 * 109.46635 * 299.99628 * 16 15 14 39 39 H 1.08993 * 109.47189 * 59.99961 * 16 15 14 40 40 H 1.09000 * 109.47197 * 300.00118 * 17 16 15 41 41 H 1.09000 * 109.47420 * 60.00194 * 17 16 15 42 42 H 0.96996 * 119.99970 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.18812 * 359.96130 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2840 2.3752 -0.0005 5 6 1.8924 3.6154 0.0043 6 8 1.1380 4.7458 0.0043 7 6 -0.2812 4.5785 0.0098 8 6 3.2905 3.7027 -0.0009 9 7 3.9241 4.9055 -0.0009 10 6 5.2163 5.0049 -0.0003 11 7 6.0500 3.9273 0.0008 12 1 7.0111 4.0583 0.0008 13 6 5.5274 2.6466 0.0009 14 7 6.3027 1.5938 0.0015 15 6 7.7531 1.7521 -0.1304 16 6 8.4354 1.2958 1.1608 17 6 9.9503 1.4606 1.0228 18 6 10.6223 1.0117 2.2947 19 1 10.0284 0.6452 3.1189 20 6 11.9954 1.0690 2.4063 21 7 12.7187 1.5149 1.4024 22 14 12.8284 0.5120 3.9827 23 1 13.1449 -0.9359 3.8904 24 1 14.0835 1.2815 4.1779 25 1 11.9194 0.7477 5.1330 26 6 4.0564 2.5198 -0.0002 27 6 3.4287 1.2786 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2061 2.3085 -0.0005 32 1 -0.5850 4.0235 -0.8778 33 1 -0.5787 4.0279 0.9021 34 1 -0.7623 5.5566 0.0087 35 1 5.6545 5.9920 -0.0008 36 1 8.1103 1.1469 -0.9636 37 1 7.9889 2.8001 -0.3152 38 1 8.0782 1.9010 1.9939 39 1 8.1997 0.2478 1.3456 40 1 10.3072 0.8551 0.1896 41 1 10.1865 2.5085 0.8378 42 1 13.6846 1.5555 1.4810 43 1 4.0166 0.3726 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433041606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:38 Heat of formation + Delta-G solvation = -29.609504 kcal Electronic energy + Delta-G solvation = -25479.159769 eV Core-core repulsion = 21717.415741 eV Total energy + Delta-G solvation = -3761.744028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.19611 -40.68988 -39.80554 -37.76675 -36.92337 -35.77279 -34.07455 -32.89991 -31.52730 -30.53082 -28.98656 -28.35347 -27.50199 -25.74350 -24.77453 -23.96454 -22.44675 -21.90301 -20.40723 -19.70326 -19.16740 -18.56002 -18.03927 -17.59677 -17.04097 -16.72490 -16.51105 -16.40367 -16.15811 -15.80761 -15.69931 -15.51614 -15.15256 -14.66015 -14.51258 -14.11915 -13.77210 -13.57303 -13.51037 -13.13463 -13.06011 -12.79690 -12.60708 -12.46969 -12.34893 -12.29093 -12.08645 -11.78394 -11.72592 -11.51857 -11.25624 -10.93512 -10.57986 -10.50680 -10.23108 -9.47316 -8.30319 -8.21668 -6.33734 -0.43577 -0.09803 1.17018 1.38307 1.39528 1.50720 1.73553 1.82653 2.15058 2.32469 2.39060 2.91540 2.97180 3.10090 3.22687 3.72241 3.82094 3.93734 3.97145 4.11348 4.23646 4.30325 4.36317 4.39830 4.40210 4.42563 4.48388 4.59418 4.66217 4.76945 4.78027 4.82756 5.01806 5.05332 5.13380 5.17565 5.28981 5.42346 5.47274 5.68080 5.80563 6.03429 6.15941 6.22328 6.41175 6.80703 6.88720 7.09932 7.35220 8.88705 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002507 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.941120 B =11167.872748 C =12057.695982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.152 3.848 4 C -0.256 4.256 5 C 0.173 3.827 6 O -0.309 6.309 7 C 0.011 3.989 8 C 0.059 3.941 9 N -0.543 5.543 10 C 0.372 3.628 11 N -0.677 5.677 12 H 0.425 0.575 13 C 0.397 3.603 14 N -0.578 5.578 15 C 0.060 3.940 16 C -0.085 4.085 17 C 0.029 3.971 18 C -0.546 4.546 19 H 0.053 0.947 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.051 4.051 27 C -0.138 4.138 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.176 0.824 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.243 0.757 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.045 0.955 40 H -0.005 1.005 41 H 0.001 0.999 42 H 0.265 0.735 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.249 6.804 -4.956 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.105 3.895 4 C -0.277 4.277 5 C 0.125 3.875 6 O -0.221 6.221 7 C -0.083 4.083 8 C -0.050 4.050 9 N -0.263 5.263 10 C 0.082 3.918 11 N -0.312 5.312 12 H 0.267 0.733 13 C 0.123 3.877 14 N -0.303 5.303 15 C -0.070 4.070 16 C -0.124 4.124 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.071 0.929 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.056 4.056 27 C -0.160 4.160 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.193 0.807 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.259 0.741 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.013 0.987 41 H 0.020 0.980 42 H 0.074 0.926 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -30.656 6.439 -4.964 31.716 hybrid contribution 1.841 -0.373 0.575 1.964 sum -28.816 6.066 -4.389 29.773 Atomic orbital electron populations 1.23469 0.75903 1.06055 1.02688 1.86128 1.23966 1.25806 1.88164 1.18549 0.91076 0.84748 0.95110 1.21470 1.02251 0.90043 1.13897 1.18209 0.88354 0.86052 0.94903 1.86213 1.20474 1.27947 1.87455 1.23493 0.76424 1.05880 1.02551 1.17894 0.91698 0.88453 1.06946 1.68425 1.08462 1.24377 1.25073 1.25410 0.86027 0.93145 0.87193 1.44321 1.12385 1.05395 1.69139 0.73316 1.21044 0.92563 0.81596 0.92463 1.72886 1.06121 1.25919 1.25414 1.21947 0.86341 0.99801 0.98866 1.21383 0.95626 1.00053 0.95299 1.18963 0.90818 0.95478 0.95632 1.21636 0.92448 1.43089 1.01243 0.92853 1.25934 0.98256 0.95212 1.00134 1.70072 1.06243 1.47562 1.33067 0.85470 0.77898 0.78477 0.79352 1.19820 1.20290 1.19069 1.18471 0.88658 0.93824 1.04688 1.20071 0.92141 0.97345 1.06428 0.91035 0.86137 0.91167 0.80730 0.91158 0.91290 0.86051 0.74129 0.90334 0.93416 0.94044 0.93578 0.98655 0.98017 0.92622 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.80 113.37 1.11 1.23 16 2 O -0.33 -6.77 10.49 -92.76 -0.97 -7.75 16 3 C 0.15 3.57 6.68 22.53 0.15 3.72 16 4 C -0.26 -4.89 8.02 22.46 0.18 -4.71 16 5 C 0.17 4.10 6.72 22.69 0.15 4.25 16 6 O -0.31 -6.43 10.30 -92.49 -0.95 -7.38 16 7 C 0.01 0.10 9.81 113.37 1.11 1.21 16 8 C 0.06 1.66 6.64 39.61 0.26 1.92 16 9 N -0.54 -14.15 10.13 -191.49 -1.94 -16.09 16 10 C 0.37 7.57 12.30 180.13 2.21 9.79 16 11 N -0.68 -16.64 5.30 -190.66 -1.01 -17.65 16 12 H 0.43 9.41 6.42 -92.71 -0.60 8.82 16 13 C 0.40 12.55 7.69 136.05 1.05 13.60 16 14 N -0.58 -20.90 9.98 -338.53 -3.38 -24.28 16 15 C 0.06 2.23 6.29 86.38 0.54 2.77 16 16 C -0.09 -3.80 5.48 30.60 0.17 -3.63 16 17 C 0.03 1.54 4.97 29.85 0.15 1.69 16 18 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 19 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 20 C 0.00 0.16 5.46 84.66 0.46 0.62 16 21 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 22 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 C -0.05 -1.55 5.90 -19.93 -0.12 -1.66 16 27 C -0.14 -4.04 9.59 22.52 0.22 -3.82 16 28 H 0.07 0.46 7.64 -2.39 -0.02 0.44 16 29 H 0.12 0.70 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 31 H 0.18 1.91 4.44 -2.91 -0.01 1.89 16 32 H 0.07 0.45 7.64 -2.38 -0.02 0.43 16 33 H 0.07 0.46 7.68 -2.39 -0.02 0.45 16 34 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.24 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.05 1.55 5.61 -2.39 -0.01 1.54 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.13 4.27 7.75 -2.91 -0.02 4.25 16 Total: -1.00 -78.46 360.72 2.39 -76.07 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.45 Total: 11.14 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 7.88 Total: -4.77 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -6.04 Total: -114.34 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.93 Total: -15.12 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -78.46 2.39 -76.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433041606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.459 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds