Wall clock time and date at job start Tue Mar 31 2020 11:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00065 * 2 1 4 4 C 1.53005 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.49474 * 305.06212 * 4 3 2 6 6 C 1.53032 * 109.50082 * 65.15904 * 4 3 2 7 7 C 1.53041 * 109.54152 * 181.31764 * 6 4 3 8 8 C 1.53195 * 109.30897 * 298.63625 * 7 6 4 9 9 N 1.46923 * 108.77563 * 54.63655 * 8 7 6 10 10 S 1.65604 * 120.63287 * 126.36763 * 9 8 7 11 11 O 1.42098 * 104.27697 * 26.09208 * 10 9 8 12 12 O 1.42105 * 104.27844 * 153.94960 * 10 9 8 13 13 C 1.81398 * 104.45018 * 270.01998 * 10 9 8 14 14 C 1.52995 * 109.47423 * 173.99615 * 13 10 9 15 15 C 1.50707 * 115.54857 * 65.19898 * 14 13 10 16 16 H 1.07998 * 119.99862 * 264.78362 * 15 14 13 17 17 C 1.37870 * 119.99572 * 84.78655 * 15 14 13 18 18 N 1.31509 * 120.00520 * 352.22607 * 17 15 14 19 19 Si 1.86807 * 119.99710 * 172.22439 * 17 15 14 20 20 H 1.48497 * 109.47134 * 59.99541 * 19 17 15 21 21 H 1.48497 * 109.47051 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46734 * 299.99768 * 19 17 15 23 23 C 1.52999 * 117.49875 * 279.53501 * 14 13 10 24 24 C 1.53004 * 117.50137 * 210.87350 * 14 13 10 25 25 C 1.46928 * 118.73816 * 306.38717 * 9 8 7 26 26 H 1.08996 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46901 * 60.00061 * 1 2 3 28 28 H 1.09006 * 109.46717 * 299.99907 * 1 2 3 29 29 H 1.09001 * 109.47254 * 299.99884 * 3 2 1 30 30 H 1.08999 * 109.47056 * 60.00066 * 3 2 1 31 31 H 1.09002 * 109.46272 * 301.34360 * 6 4 3 32 32 H 1.09005 * 109.45964 * 61.29664 * 6 4 3 33 33 H 1.08993 * 109.50073 * 178.68807 * 7 6 4 34 34 H 1.08997 * 109.52359 * 58.60057 * 7 6 4 35 35 H 1.09001 * 109.59099 * 294.84564 * 8 7 6 36 36 H 1.09006 * 109.70196 * 174.48927 * 8 7 6 37 37 H 1.09006 * 109.47150 * 293.99835 * 13 10 9 38 38 H 1.09001 * 109.47085 * 53.99548 * 13 10 9 39 39 H 0.97000 * 120.00390 * 185.02733 * 18 17 15 40 40 H 1.09002 * 117.49937 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.50277 * 145.01984 * 23 14 13 42 42 H 1.08998 * 117.49567 * 214.97739 * 24 14 13 43 43 H 1.08992 * 117.49672 * 359.96889 * 24 14 13 44 44 H 1.08998 * 109.58386 * 293.82047 * 25 9 8 45 45 H 1.09006 * 109.70623 * 173.46843 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8519 0.5672 0.8402 6 6 3.9964 0.5403 -1.3100 7 6 5.5192 0.3890 -1.2978 8 6 6.1650 1.7737 -1.1867 9 7 5.6172 2.4577 -0.0075 10 16 6.6241 3.0807 1.1503 11 8 7.8351 3.3458 0.4557 12 8 5.8721 4.1326 1.7396 13 6 6.8517 1.7223 2.3307 14 6 7.8897 2.1264 3.3795 15 6 7.4946 3.2699 4.2782 16 1 7.8019 4.2768 4.0376 17 6 6.7408 3.0303 5.4074 18 7 6.2378 1.8341 5.6208 19 14 6.4341 4.4050 6.6346 20 1 5.7248 5.5216 5.9599 21 1 5.6022 3.8934 7.7532 22 1 7.7321 4.8925 7.1663 23 6 9.3658 2.0079 2.9947 24 6 8.7508 1.0164 3.9857 25 6 4.1589 2.5782 0.1253 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8901 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 3.5346 -0.4416 -1.4139 32 1 3.7008 1.1708 -2.1487 33 1 5.8445 -0.0911 -2.2207 34 1 5.8178 -0.2212 -0.4454 35 1 5.9421 2.3539 -2.0821 36 1 7.2446 1.6681 -1.0791 37 1 5.9034 1.5057 2.8227 38 1 7.1971 0.8345 1.8009 39 1 5.6479 1.6836 6.3759 40 1 9.5974 1.6416 1.9945 41 1 10.0512 2.7566 3.3919 42 1 9.0317 1.1134 5.0343 43 1 8.5773 -0.0018 3.6377 44 1 3.7724 3.2240 -0.6632 45 1 3.9122 3.0023 1.0987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451180499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:56 Heat of formation + Delta-G solvation = -102.567445 kcal Electronic energy + Delta-G solvation = -26343.450631 eV Core-core repulsion = 22681.694110 eV Total energy + Delta-G solvation = -3661.756521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.04555 -37.38686 -36.74424 -36.31239 -35.08179 -32.73969 -32.03641 -31.64048 -28.14046 -27.36540 -25.47957 -25.40716 -24.22732 -22.10624 -21.20315 -20.25968 -19.34762 -18.32180 -17.13877 -16.58580 -16.43483 -15.95577 -15.48432 -15.27081 -15.03361 -14.67943 -14.39835 -14.22850 -13.87250 -13.70233 -13.50097 -13.23059 -13.03017 -12.31688 -12.17670 -11.92272 -11.83644 -11.68701 -11.42564 -11.26793 -11.20687 -11.03362 -11.02382 -10.90409 -10.84286 -10.59399 -10.47714 -10.44678 -10.36681 -10.09096 -9.77560 -9.67810 -8.96116 -8.78330 -8.55410 -8.05432 -6.12893 -4.23656 1.04671 3.26865 3.32844 3.34768 3.41304 3.68182 4.37831 4.58665 4.62114 4.74984 4.89327 4.94883 5.06096 5.13499 5.15297 5.19660 5.20287 5.23591 5.30424 5.37469 5.43414 5.48566 5.58222 5.63290 5.75082 5.81096 5.84178 5.90931 5.99609 6.12486 6.17710 6.25164 6.34527 6.36934 6.42847 6.63057 6.72704 6.84284 7.00328 7.04768 7.26388 7.39903 7.81024 8.21434 8.81434 9.47363 10.94707 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004963 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.789536 B = 5640.731270 C = 6690.204953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.105 4.105 5 H 0.088 0.912 6 C -0.105 4.105 7 C -0.137 4.137 8 C 0.121 3.879 9 N -1.008 6.008 10 S 2.605 3.395 11 O -0.971 6.971 12 O -0.948 6.948 13 C -0.552 4.552 14 C 0.043 3.957 15 C -0.517 4.517 16 H 0.067 0.933 17 C 0.083 3.917 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.208 4.208 24 C -0.141 4.141 25 C 0.130 3.870 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.097 0.903 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 -4.886 -13.341 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.011 4.011 4 C -0.125 4.125 5 H 0.106 0.894 6 C -0.143 4.143 7 C -0.176 4.176 8 C -0.005 4.005 9 N -0.844 5.844 10 S 2.704 3.296 11 O -0.961 6.961 12 O -0.938 6.938 13 C -0.685 4.685 14 C 0.041 3.959 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.180 4.180 25 C 0.004 3.996 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.826 -4.257 -13.216 15.939 hybrid contribution -0.740 0.054 0.934 1.192 sum -8.565 -4.203 -12.283 15.553 Atomic orbital electron populations 1.22721 0.81274 1.02576 0.99910 1.87874 1.19418 1.28033 1.95408 1.22519 0.93468 0.84643 1.00466 1.21570 0.92728 0.98052 1.00185 0.89385 1.21439 0.95276 1.01157 0.96411 1.21965 0.95980 0.97207 1.02492 1.21353 0.98489 0.92426 0.88239 1.58138 1.15974 1.74365 1.35883 1.05311 0.73188 0.77156 0.73985 1.93484 1.46082 1.84333 1.72235 1.93529 1.70778 1.51885 1.77645 1.30022 1.10552 1.15262 1.12685 1.18286 0.84935 0.98040 0.94652 1.20481 1.35595 0.92157 1.07155 0.91445 1.24942 0.94558 0.95465 0.97266 1.69967 1.30236 1.21044 1.29726 0.86669 0.78586 0.82553 0.80541 1.19469 1.21115 1.19858 1.23195 0.98639 1.03972 0.98750 1.22548 1.04806 0.93049 0.97630 1.21218 0.79669 0.95281 1.03470 0.89798 0.94276 0.94024 0.93161 0.92723 0.91141 0.92159 0.90943 0.91265 0.91582 0.89256 0.84899 0.88469 0.92672 0.90717 0.89547 0.89608 0.91542 0.91421 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.59 10.22 -35.23 -0.36 -4.95 16 3 C 0.07 0.72 5.32 37.16 0.20 0.92 16 4 C -0.11 -1.28 2.58 -90.50 -0.23 -1.52 16 5 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.11 -1.13 5.08 -26.69 -0.14 -1.26 16 7 C -0.14 -1.49 6.08 -26.61 -0.16 -1.65 16 8 C 0.12 1.55 6.32 -3.71 -0.02 1.53 16 9 N -1.01 -15.79 3.22 -113.52 -0.37 -16.15 16 10 S 2.60 53.53 5.15 -107.50 -0.55 52.98 16 11 O -0.97 -21.42 16.72 -57.54 -0.96 -22.38 16 12 O -0.95 -22.65 16.39 -57.54 -0.94 -23.59 16 13 C -0.55 -11.72 6.03 37.15 0.22 -11.50 16 14 C 0.04 1.06 1.32 -155.66 -0.21 0.85 16 15 C -0.52 -14.20 8.17 -34.44 -0.28 -14.48 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C 0.08 2.26 5.38 -17.82 -0.10 2.17 16 18 N -0.87 -24.12 12.98 55.43 0.72 -23.40 16 19 Si 0.89 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.21 -4.61 9.96 -26.69 -0.27 -4.87 16 24 C -0.14 -3.24 9.49 -26.69 -0.25 -3.49 16 25 C 0.13 1.79 5.59 -3.71 -0.02 1.77 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.18 7.09 -51.93 -0.37 0.81 16 37 H 0.13 2.95 8.14 -51.92 -0.42 2.53 16 38 H 0.10 1.76 8.09 -51.92 -0.42 1.34 16 39 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 42 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.43 7.11 -51.93 -0.37 1.06 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -32.52 374.39 -9.86 -42.38 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.87 Total: 3.27 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: -0.14 Total: -30.15 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.35 Total: -39.56 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -2.27 Total: -50.92 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.55 Total: 52.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.52 -9.86 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451180499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.188 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds