Wall clock time and date at job start Tue Mar 31 2020 11:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00065 * 2 1 4 4 C 1.53005 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.49474 * 305.06212 * 4 3 2 6 6 C 1.53032 * 109.50082 * 65.15904 * 4 3 2 7 7 C 1.53041 * 109.54152 * 181.31764 * 6 4 3 8 8 C 1.53195 * 109.30897 * 298.63625 * 7 6 4 9 9 N 1.46923 * 108.77563 * 54.63655 * 8 7 6 10 10 S 1.65604 * 120.63287 * 126.36763 * 9 8 7 11 11 O 1.42098 * 104.27697 * 26.09208 * 10 9 8 12 12 O 1.42105 * 104.27844 * 153.94960 * 10 9 8 13 13 C 1.81398 * 104.45018 * 270.01998 * 10 9 8 14 14 C 1.52995 * 109.47423 * 173.99615 * 13 10 9 15 15 C 1.50707 * 115.54857 * 65.19898 * 14 13 10 16 16 H 1.07998 * 119.99862 * 264.78362 * 15 14 13 17 17 C 1.37870 * 119.99572 * 84.78655 * 15 14 13 18 18 N 1.31509 * 120.00520 * 352.22607 * 17 15 14 19 19 Si 1.86807 * 119.99710 * 172.22439 * 17 15 14 20 20 H 1.48497 * 109.47134 * 59.99541 * 19 17 15 21 21 H 1.48497 * 109.47051 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46734 * 299.99768 * 19 17 15 23 23 C 1.52999 * 117.49875 * 279.53501 * 14 13 10 24 24 C 1.53004 * 117.50137 * 210.87350 * 14 13 10 25 25 C 1.46928 * 118.73816 * 306.38717 * 9 8 7 26 26 H 1.08996 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46901 * 60.00061 * 1 2 3 28 28 H 1.09006 * 109.46717 * 299.99907 * 1 2 3 29 29 H 1.09001 * 109.47254 * 299.99884 * 3 2 1 30 30 H 1.08999 * 109.47056 * 60.00066 * 3 2 1 31 31 H 1.09002 * 109.46272 * 301.34360 * 6 4 3 32 32 H 1.09005 * 109.45964 * 61.29664 * 6 4 3 33 33 H 1.08993 * 109.50073 * 178.68807 * 7 6 4 34 34 H 1.08997 * 109.52359 * 58.60057 * 7 6 4 35 35 H 1.09001 * 109.59099 * 294.84564 * 8 7 6 36 36 H 1.09006 * 109.70196 * 174.48927 * 8 7 6 37 37 H 1.09006 * 109.47150 * 293.99835 * 13 10 9 38 38 H 1.09001 * 109.47085 * 53.99548 * 13 10 9 39 39 H 0.97000 * 120.00390 * 185.02733 * 18 17 15 40 40 H 1.09002 * 117.49937 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.50277 * 145.01984 * 23 14 13 42 42 H 1.08998 * 117.49567 * 214.97739 * 24 14 13 43 43 H 1.08992 * 117.49672 * 359.96889 * 24 14 13 44 44 H 1.08998 * 109.58386 * 293.82047 * 25 9 8 45 45 H 1.09006 * 109.70623 * 173.46843 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8519 0.5672 0.8402 6 6 3.9964 0.5403 -1.3100 7 6 5.5192 0.3890 -1.2978 8 6 6.1650 1.7737 -1.1867 9 7 5.6172 2.4577 -0.0075 10 16 6.6241 3.0807 1.1503 11 8 7.8351 3.3458 0.4557 12 8 5.8721 4.1326 1.7396 13 6 6.8517 1.7223 2.3307 14 6 7.8897 2.1264 3.3795 15 6 7.4946 3.2699 4.2782 16 1 7.8019 4.2768 4.0376 17 6 6.7408 3.0303 5.4074 18 7 6.2378 1.8341 5.6208 19 14 6.4341 4.4050 6.6346 20 1 5.7248 5.5216 5.9599 21 1 5.6022 3.8934 7.7532 22 1 7.7321 4.8925 7.1663 23 6 9.3658 2.0079 2.9947 24 6 8.7508 1.0164 3.9857 25 6 4.1589 2.5782 0.1253 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8901 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 3.5346 -0.4416 -1.4139 32 1 3.7008 1.1708 -2.1487 33 1 5.8445 -0.0911 -2.2207 34 1 5.8178 -0.2212 -0.4454 35 1 5.9421 2.3539 -2.0821 36 1 7.2446 1.6681 -1.0791 37 1 5.9034 1.5057 2.8227 38 1 7.1971 0.8345 1.8009 39 1 5.6479 1.6836 6.3759 40 1 9.5974 1.6416 1.9945 41 1 10.0512 2.7566 3.3919 42 1 9.0317 1.1134 5.0343 43 1 8.5773 -0.0018 3.6377 44 1 3.7724 3.2240 -0.6632 45 1 3.9122 3.0023 1.0987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451180499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:55 Heat of formation + Delta-G solvation = -124.115981 kcal Electronic energy + Delta-G solvation = -26344.385046 eV Core-core repulsion = 22681.694110 eV Total energy + Delta-G solvation = -3662.690936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.00374 -38.58241 -38.28727 -38.02296 -36.80866 -34.10166 -33.78521 -32.61301 -29.86443 -28.14394 -27.51781 -26.26686 -25.30344 -23.08070 -22.98741 -21.60151 -20.88495 -19.75946 -18.61457 -18.34011 -17.51303 -16.93038 -16.81704 -16.74748 -16.59412 -16.06234 -15.71821 -15.47781 -15.31904 -14.91092 -14.69168 -14.59883 -14.09653 -13.76827 -13.69411 -13.35790 -13.15515 -13.08307 -12.93042 -12.85724 -12.79325 -12.66242 -12.45162 -12.40004 -12.25199 -12.02824 -11.94344 -11.76940 -11.58269 -11.37026 -11.30055 -10.89363 -10.57311 -10.55341 -10.13096 -9.73282 -8.20294 -6.35528 -0.55340 1.38271 1.39889 1.47207 1.88159 2.38616 2.83612 2.99325 3.06283 3.33048 3.40210 3.59362 3.86110 3.96316 4.02984 4.15857 4.22134 4.28345 4.35434 4.44103 4.49285 4.50864 4.55830 4.57895 4.61436 4.67019 4.72824 4.82996 4.86092 4.88969 4.90548 4.95787 5.05875 5.17943 5.19667 5.29886 5.36025 5.44915 5.50161 5.56981 5.69557 5.70716 6.21087 6.27390 6.70464 7.36799 8.86591 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004963 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.789536 B = 5640.731270 C = 6690.204953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.067 3.933 4 C -0.103 4.103 5 H 0.066 0.934 6 C -0.100 4.100 7 C -0.134 4.134 8 C 0.110 3.890 9 N -1.001 6.001 10 S 2.620 3.380 11 O -0.988 6.988 12 O -0.990 6.990 13 C -0.550 4.550 14 C 0.010 3.990 15 C -0.536 4.536 16 H 0.048 0.952 17 C 0.043 3.957 18 N -0.893 5.893 19 Si 0.935 3.065 20 H -0.276 1.276 21 H -0.273 1.273 22 H -0.267 1.267 23 C -0.195 4.195 24 C -0.139 4.139 25 C 0.124 3.876 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.266 0.734 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 -5.721 -15.267 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.010 4.010 4 C -0.123 4.123 5 H 0.085 0.915 6 C -0.138 4.138 7 C -0.172 4.172 8 C -0.014 4.014 9 N -0.839 5.839 10 S 2.718 3.282 11 O -0.979 6.979 12 O -0.980 6.980 13 C -0.683 4.683 14 C 0.008 3.992 15 C -0.573 4.573 16 H 0.067 0.933 17 C -0.160 4.160 18 N -0.529 5.529 19 Si 0.760 3.240 20 H -0.201 1.201 21 H -0.198 1.198 22 H -0.192 1.192 23 C -0.232 4.232 24 C -0.178 4.178 25 C -0.002 4.002 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.492 -5.099 -15.131 18.085 hybrid contribution -0.558 0.294 1.462 1.592 sum -9.050 -4.805 -13.669 17.083 Atomic orbital electron populations 1.22907 0.79698 1.03683 1.00757 1.87830 1.21206 1.28376 1.95587 1.22503 0.92523 0.84711 1.01298 1.21499 0.93720 0.96558 1.00506 0.91545 1.21420 0.95089 1.01430 0.95815 1.21972 0.95905 0.95790 1.03582 1.21699 0.98500 0.93718 0.87473 1.57758 1.16292 1.74489 1.35394 1.04538 0.72961 0.76647 0.74005 1.93447 1.47331 1.84688 1.72401 1.93469 1.71655 1.53958 1.78932 1.29918 1.08919 1.16976 1.12455 1.18427 0.86791 0.98104 0.95913 1.20668 1.35892 0.92431 1.08308 0.93338 1.25531 0.94568 0.97372 0.98551 1.70022 1.30650 1.22042 1.30175 0.85964 0.78759 0.80226 0.79061 1.20143 1.19816 1.19169 1.23241 0.97013 1.03272 0.99672 1.22502 1.04494 0.93937 0.96883 1.21400 0.78514 0.96894 1.03350 0.88661 0.92687 0.93900 0.91005 0.93234 0.90879 0.90430 0.88099 0.92167 0.89395 0.89608 0.86468 0.85460 0.92532 0.88269 0.89862 0.91540 0.89526 0.88925 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -9.05 10.22 -148.98 -1.52 -10.57 16 3 C 0.07 1.36 5.32 71.98 0.38 1.74 16 4 C -0.10 -2.36 2.58 -10.72 -0.03 -2.39 16 5 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 6 C -0.10 -1.85 5.08 30.62 0.16 -1.70 16 7 C -0.13 -2.50 6.08 30.67 0.19 -2.31 16 8 C 0.11 2.56 6.32 86.36 0.55 3.11 16 9 N -1.00 -30.21 3.22 -513.06 -1.65 -31.86 16 10 S 2.62 107.86 5.15 -56.49 -0.29 107.56 16 11 O -0.99 -43.08 16.72 -127.65 -2.13 -45.22 16 12 O -0.99 -48.54 16.39 -127.65 -2.09 -50.63 16 13 C -0.55 -23.39 6.03 71.98 0.43 -22.95 16 14 C 0.01 0.48 1.32 -52.93 -0.07 0.41 16 15 C -0.54 -30.12 8.17 25.60 0.21 -29.91 16 16 H 0.05 2.83 7.83 -2.91 -0.02 2.80 16 17 C 0.04 2.37 5.38 84.65 0.46 2.83 16 18 N -0.89 -49.93 12.98 21.44 0.28 -49.66 16 19 Si 0.94 44.33 29.55 68.60 2.03 46.35 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 C -0.19 -8.48 9.96 30.62 0.30 -8.17 16 24 C -0.14 -6.34 9.49 30.62 0.29 -6.05 16 25 C 0.12 3.30 5.59 86.36 0.48 3.78 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 32 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 2.07 7.09 -2.38 -0.02 2.06 16 37 H 0.12 5.34 8.14 -2.39 -0.02 5.32 16 38 H 0.13 4.46 8.09 -2.39 -0.02 4.44 16 39 H 0.27 14.13 8.32 -92.71 -0.77 13.36 16 40 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 41 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.29 7.11 -2.38 -0.02 2.28 16 Total: -1.00 -70.41 374.39 0.16 -70.26 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.94 Total: 23.75 kcal Atomic # 6 Polarization: -64.58 SS G_CDS: 4.60 Total: -59.98 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.37 Total: -81.52 kcal Atomic # 8 Polarization: -100.67 SS G_CDS: -5.75 Total: -106.42 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 107.86 SS G_CDS: -0.29 Total: 107.56 kcal Total: -70.41 0.16 -70.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451180499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.861 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds