Wall clock time and date at job start Tue Mar 31 2020 11:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99831 * 2 1 4 4 H 1.09007 * 109.46868 * 30.00355 * 3 2 1 5 5 C 1.52995 * 109.47384 * 269.99933 * 3 2 1 6 6 C 1.52999 * 109.47359 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46753 * 60.00547 * 6 5 3 8 8 C 1.53007 * 109.46871 * 299.99531 * 7 6 5 9 9 C 1.52999 * 109.47049 * 60.00650 * 8 7 6 10 10 H 1.08996 * 109.47230 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.47438 * 59.99752 * 9 8 7 12 12 S 1.65593 * 120.00001 * 95.00242 * 11 9 8 13 13 O 1.42109 * 104.27536 * 181.07290 * 12 11 9 14 14 O 1.42099 * 104.27684 * 308.92458 * 12 11 9 15 15 C 1.81396 * 104.45111 * 65.00016 * 12 11 9 16 16 C 1.53003 * 109.47051 * 173.78718 * 15 12 11 17 17 C 1.50694 * 115.55324 * 65.26819 * 16 15 12 18 18 H 1.07995 * 120.00184 * 268.55272 * 17 16 15 19 19 C 1.37879 * 119.99903 * 88.54769 * 17 16 15 20 20 N 1.31519 * 120.00035 * 174.70736 * 19 17 16 21 21 Si 1.86806 * 119.99869 * 354.70216 * 19 17 16 22 22 H 1.48495 * 109.46779 * 92.55407 * 21 19 17 23 23 H 1.48498 * 109.46895 * 212.55123 * 21 19 17 24 24 H 1.48490 * 109.47127 * 332.55515 * 21 19 17 25 25 C 1.52998 * 117.49735 * 279.59903 * 16 15 12 26 26 C 1.52997 * 117.49655 * 210.94295 * 16 15 12 27 27 H 1.08994 * 109.47688 * 60.00095 * 1 2 3 28 28 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47254 * 299.99361 * 1 2 3 30 30 H 1.09006 * 109.46900 * 59.99772 * 5 3 2 31 31 H 1.08999 * 109.46969 * 300.00467 * 5 3 2 32 32 H 1.08996 * 109.47230 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47241 * 300.00478 * 6 5 3 34 34 H 1.08998 * 109.47811 * 59.99844 * 7 6 5 35 35 H 1.09000 * 109.47090 * 179.97438 * 7 6 5 36 36 H 1.09009 * 109.46677 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.47149 * 299.99925 * 8 7 6 38 38 H 0.97005 * 119.99587 * 275.00602 * 11 9 8 39 39 H 1.09000 * 109.46786 * 293.78741 * 15 12 11 40 40 H 1.08997 * 109.46934 * 53.78486 * 15 12 11 41 41 H 0.97001 * 119.99674 * 179.97438 * 20 19 17 42 42 H 1.09005 * 117.49914 * 0.02562 * 25 16 15 43 43 H 1.09003 * 117.50240 * 145.02217 * 25 16 15 44 44 H 1.09001 * 117.49997 * 214.97978 * 26 16 15 45 45 H 1.08998 * 117.50207 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4424 6 6 2.8393 3.1694 -1.4424 7 6 4.1879 3.1278 -0.7211 8 6 3.9805 2.6618 0.7215 9 6 3.3588 1.2638 0.7215 10 1 3.2114 0.9317 1.7491 11 7 4.2534 0.3315 0.0310 12 16 5.3306 -0.5786 0.8990 13 8 6.0299 -1.3275 -0.0858 14 8 6.0066 0.3652 1.7184 15 6 4.2911 -1.6694 1.9089 16 6 5.1755 -2.6747 2.6495 17 6 6.1111 -2.0863 3.6739 18 1 7.1131 -1.8013 3.3893 19 6 5.6877 -1.9117 4.9744 20 7 6.5341 -1.4964 5.8913 21 14 3.9118 -2.2650 5.4339 22 1 3.7919 -3.6688 5.9029 23 1 3.4883 -1.3430 6.5182 24 1 3.0438 -2.0641 4.2460 25 6 5.6615 -3.8974 1.8688 26 6 4.5831 -4.0543 2.9437 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.2568 1.8014 -1.9563 31 1 2.8829 1.0775 -1.9563 32 1 2.9867 3.5016 -2.4700 33 1 2.1737 3.8631 -0.9287 34 1 4.8536 2.4341 -1.2348 35 1 4.6311 4.1236 -0.7214 36 1 4.9413 2.6326 1.2355 37 1 3.3149 3.3556 1.2352 38 1 4.2147 0.2474 -0.9346 39 1 3.7344 -1.0735 2.6321 40 1 3.5932 -2.2047 1.2651 41 1 6.2361 -1.3733 6.8062 42 1 5.3516 -3.9855 0.8274 43 1 6.6578 -4.2765 2.0963 44 1 4.8703 -4.5365 3.8780 45 1 3.5633 -4.2457 2.6100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451249785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:06 Heat of formation + Delta-G solvation = -102.725948 kcal Electronic energy + Delta-G solvation = -26870.183833 eV Core-core repulsion = 23208.420439 eV Total energy + Delta-G solvation = -3661.763395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.75551 -37.06904 -36.77970 -36.20286 -35.05904 -33.49285 -32.12400 -30.29984 -28.99716 -28.41673 -26.53990 -25.47613 -22.74200 -22.33377 -21.66373 -20.15929 -19.37732 -18.41312 -17.37311 -16.74218 -16.50808 -16.03021 -15.59876 -15.23755 -15.10005 -14.84253 -14.64999 -14.28745 -13.80764 -13.79568 -13.28449 -12.92975 -12.73434 -12.62670 -12.46811 -12.41626 -12.18697 -11.81279 -11.39777 -11.30269 -11.18214 -11.14310 -11.05888 -10.88204 -10.81766 -10.72325 -10.59852 -10.44408 -10.31360 -10.04120 -9.71439 -9.58611 -9.18075 -9.10071 -8.62619 -8.39011 -6.13598 -4.20364 1.06284 3.24794 3.34259 3.36370 3.39891 3.60421 4.38249 4.43304 4.53138 4.56045 4.81019 4.88460 4.96254 4.97257 5.05659 5.08030 5.15245 5.18938 5.20647 5.23116 5.33713 5.39706 5.51087 5.57035 5.64955 5.78756 5.82976 5.87294 5.89466 6.01661 6.05472 6.10182 6.15987 6.29132 6.34140 6.38507 6.48397 6.71502 6.94033 7.04584 7.11388 7.32303 7.64452 8.40926 8.92018 9.48038 10.97905 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.005305 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.725714 B = 5277.149980 C = 5559.694813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.083 3.917 4 H 0.071 0.929 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.138 4.138 9 C 0.161 3.839 10 H 0.090 0.910 11 N -1.117 6.117 12 S 2.615 3.385 13 O -0.972 6.972 14 O -0.941 6.941 15 C -0.573 4.573 16 C 0.001 3.999 17 C -0.507 4.507 18 H 0.086 0.914 19 C 0.089 3.911 20 N -0.884 5.884 21 Si 0.872 3.128 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.255 1.255 25 C -0.177 4.177 26 C -0.185 4.185 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.409 0.591 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 7.584 -13.447 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C 0.023 3.977 4 H 0.089 0.911 5 C -0.178 4.178 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.177 4.177 9 C 0.053 3.947 10 H 0.108 0.892 11 N -0.874 5.874 12 S 2.711 3.289 13 O -0.962 6.962 14 O -0.931 6.931 15 C -0.704 4.704 16 C -0.001 4.001 17 C -0.544 4.544 18 H 0.104 0.896 19 C -0.116 4.116 20 N -0.519 5.519 21 Si 0.700 3.300 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.179 1.179 25 C -0.215 4.215 26 C -0.224 4.224 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.244 0.756 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.600 7.590 -13.100 19.698 hybrid contribution -2.041 -0.265 0.220 2.070 sum -14.642 7.326 -12.881 20.831 Atomic orbital electron populations 1.22800 0.81452 1.02776 0.99703 1.87991 1.19187 1.27275 1.94992 1.22450 0.94326 0.84944 0.95938 0.91100 1.22000 1.01398 0.97470 0.96951 1.21521 0.97116 0.96108 1.00710 1.21517 0.96951 1.01505 0.95826 1.22077 1.03113 0.94977 0.97547 1.20757 0.87626 0.90413 0.95936 0.89234 1.55951 1.56687 1.55635 1.19079 1.04911 0.74637 0.74969 0.74416 1.93509 1.70438 1.73387 1.58903 1.93573 1.70149 1.59551 1.69789 1.30246 1.13060 1.14227 1.12896 1.18870 0.97136 0.85456 0.98662 1.20344 0.99300 1.42695 0.92047 0.89574 1.24939 0.97142 0.93485 0.96018 1.69903 1.34739 1.44961 1.02316 0.86946 0.86210 0.78311 0.78573 1.20191 1.21787 1.17927 1.23014 0.99034 1.04256 0.95164 1.22972 0.96579 1.02490 1.00375 0.94268 0.89673 0.94058 0.91802 0.90835 0.91725 0.91957 0.91375 0.91678 0.88911 0.91057 0.75644 0.85884 0.87205 0.92368 0.90018 0.88720 0.89022 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.47 10.21 -35.23 -0.36 -4.83 16 3 C 0.08 0.87 2.37 -26.73 -0.06 0.81 16 4 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 5 C -0.14 -1.27 5.35 -26.73 -0.14 -1.41 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.12 -1.22 5.77 -26.73 -0.15 -1.37 16 8 C -0.14 -1.65 5.64 -26.73 -0.15 -1.80 16 9 C 0.16 2.10 2.58 -67.93 -0.18 1.92 16 10 H 0.09 1.24 7.29 -51.93 -0.38 0.86 16 11 N -1.12 -16.42 4.50 -4.89 -0.02 -16.44 16 12 S 2.62 52.05 5.11 -107.50 -0.55 51.50 16 13 O -0.97 -21.23 18.08 -57.54 -1.04 -22.27 16 14 O -0.94 -22.07 16.78 -57.54 -0.97 -23.03 16 15 C -0.57 -11.57 5.38 37.16 0.20 -11.37 16 16 C 0.00 0.03 0.79 -155.66 -0.12 -0.09 16 17 C -0.51 -14.31 8.78 -34.44 -0.30 -14.61 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 19 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 20 N -0.88 -26.90 13.96 55.43 0.77 -26.13 16 21 Si 0.87 21.18 24.96 -169.99 -4.24 16.93 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.26 -5.72 5.68 56.52 0.32 -5.40 16 25 C -0.18 -3.78 9.96 -26.70 -0.27 -4.04 16 26 C -0.19 -3.95 7.67 -26.70 -0.20 -4.15 16 27 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.06 0.50 7.87 -51.93 -0.41 0.10 16 31 H 0.07 0.71 6.51 -51.93 -0.34 0.37 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.75 7.45 -51.93 -0.39 0.36 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.34 7.43 -51.92 -0.39 0.96 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.41 5.25 6.78 -34.47 -0.23 5.02 16 39 H 0.12 2.46 6.03 -51.92 -0.31 2.14 16 40 H 0.11 1.89 8.09 -51.93 -0.42 1.47 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 44 H 0.09 2.02 7.34 -51.93 -0.38 1.64 16 45 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -34.55 360.00 -9.03 -43.57 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.50 Total: 8.72 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: -0.55 Total: -33.45 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.75 Total: -42.57 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.37 Total: -50.14 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.24 Total: 16.93 kcal Atomic # 16 Polarization: 52.05 SS G_CDS: -0.55 Total: 51.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.55 -9.03 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451249785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.154 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds