Wall clock time and date at job start Tue Mar 31 2020 11:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99831 * 2 1 4 4 H 1.09007 * 109.46868 * 30.00355 * 3 2 1 5 5 C 1.52995 * 109.47384 * 269.99933 * 3 2 1 6 6 C 1.52999 * 109.47359 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46753 * 60.00547 * 6 5 3 8 8 C 1.53007 * 109.46871 * 299.99531 * 7 6 5 9 9 C 1.52999 * 109.47049 * 60.00650 * 8 7 6 10 10 H 1.08996 * 109.47230 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.47438 * 59.99752 * 9 8 7 12 12 S 1.65593 * 120.00001 * 95.00242 * 11 9 8 13 13 O 1.42109 * 104.27536 * 181.07290 * 12 11 9 14 14 O 1.42099 * 104.27684 * 308.92458 * 12 11 9 15 15 C 1.81396 * 104.45111 * 65.00016 * 12 11 9 16 16 C 1.53003 * 109.47051 * 173.78718 * 15 12 11 17 17 C 1.50694 * 115.55324 * 65.26819 * 16 15 12 18 18 H 1.07995 * 120.00184 * 268.55272 * 17 16 15 19 19 C 1.37879 * 119.99903 * 88.54769 * 17 16 15 20 20 N 1.31519 * 120.00035 * 174.70736 * 19 17 16 21 21 Si 1.86806 * 119.99869 * 354.70216 * 19 17 16 22 22 H 1.48495 * 109.46779 * 92.55407 * 21 19 17 23 23 H 1.48498 * 109.46895 * 212.55123 * 21 19 17 24 24 H 1.48490 * 109.47127 * 332.55515 * 21 19 17 25 25 C 1.52998 * 117.49735 * 279.59903 * 16 15 12 26 26 C 1.52997 * 117.49655 * 210.94295 * 16 15 12 27 27 H 1.08994 * 109.47688 * 60.00095 * 1 2 3 28 28 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47254 * 299.99361 * 1 2 3 30 30 H 1.09006 * 109.46900 * 59.99772 * 5 3 2 31 31 H 1.08999 * 109.46969 * 300.00467 * 5 3 2 32 32 H 1.08996 * 109.47230 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47241 * 300.00478 * 6 5 3 34 34 H 1.08998 * 109.47811 * 59.99844 * 7 6 5 35 35 H 1.09000 * 109.47090 * 179.97438 * 7 6 5 36 36 H 1.09009 * 109.46677 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.47149 * 299.99925 * 8 7 6 38 38 H 0.97005 * 119.99587 * 275.00602 * 11 9 8 39 39 H 1.09000 * 109.46786 * 293.78741 * 15 12 11 40 40 H 1.08997 * 109.46934 * 53.78486 * 15 12 11 41 41 H 0.97001 * 119.99674 * 179.97438 * 20 19 17 42 42 H 1.09005 * 117.49914 * 0.02562 * 25 16 15 43 43 H 1.09003 * 117.50240 * 145.02217 * 25 16 15 44 44 H 1.09001 * 117.49997 * 214.97978 * 26 16 15 45 45 H 1.08998 * 117.50207 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4424 6 6 2.8393 3.1694 -1.4424 7 6 4.1879 3.1278 -0.7211 8 6 3.9805 2.6618 0.7215 9 6 3.3588 1.2638 0.7215 10 1 3.2114 0.9317 1.7491 11 7 4.2534 0.3315 0.0310 12 16 5.3306 -0.5786 0.8990 13 8 6.0299 -1.3275 -0.0858 14 8 6.0066 0.3652 1.7184 15 6 4.2911 -1.6694 1.9089 16 6 5.1755 -2.6747 2.6495 17 6 6.1111 -2.0863 3.6739 18 1 7.1131 -1.8013 3.3893 19 6 5.6877 -1.9117 4.9744 20 7 6.5341 -1.4964 5.8913 21 14 3.9118 -2.2650 5.4339 22 1 3.7919 -3.6688 5.9029 23 1 3.4883 -1.3430 6.5182 24 1 3.0438 -2.0641 4.2460 25 6 5.6615 -3.8974 1.8688 26 6 4.5831 -4.0543 2.9437 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.2568 1.8014 -1.9563 31 1 2.8829 1.0775 -1.9563 32 1 2.9867 3.5016 -2.4700 33 1 2.1737 3.8631 -0.9287 34 1 4.8536 2.4341 -1.2348 35 1 4.6311 4.1236 -0.7214 36 1 4.9413 2.6326 1.2355 37 1 3.3149 3.3556 1.2352 38 1 4.2147 0.2474 -0.9346 39 1 3.7344 -1.0735 2.6321 40 1 3.5932 -2.2047 1.2651 41 1 6.2361 -1.3733 6.8062 42 1 5.3516 -3.9855 0.8274 43 1 6.6578 -4.2765 2.0963 44 1 4.8703 -4.5365 3.8780 45 1 3.5633 -4.2457 2.6100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451249785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:05 Heat of formation + Delta-G solvation = -129.259282 kcal Electronic energy + Delta-G solvation = -26871.334405 eV Core-core repulsion = 23208.420439 eV Total energy + Delta-G solvation = -3662.913966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60085 -38.84808 -37.96872 -37.52505 -36.76160 -34.51248 -34.28949 -31.10300 -30.08201 -29.91776 -27.60090 -27.19902 -23.57014 -23.36306 -23.12579 -21.52745 -20.88067 -19.84193 -18.72007 -18.51165 -17.59615 -17.14338 -16.93143 -16.86545 -16.41195 -16.04725 -15.59490 -15.54854 -15.39523 -14.83032 -14.60969 -14.55239 -14.06749 -13.95030 -13.62630 -13.46655 -13.23410 -13.18319 -12.94646 -12.87559 -12.66820 -12.50915 -12.38601 -12.32093 -12.08913 -12.05420 -11.77988 -11.69986 -11.55760 -11.46118 -11.26678 -10.96787 -10.72856 -10.54227 -10.28915 -10.07041 -8.32156 -6.44890 -0.51613 1.34933 1.36255 1.50325 2.02827 2.35538 2.80644 2.88591 3.00718 3.15759 3.42707 3.67985 3.76577 3.84967 4.07707 4.13419 4.22373 4.26301 4.30081 4.32887 4.35898 4.38556 4.50998 4.59373 4.60163 4.64402 4.68392 4.83699 4.84086 4.95025 5.02572 5.02830 5.12460 5.16533 5.20628 5.25267 5.32221 5.43299 5.43776 5.54780 5.62226 6.18610 6.20282 6.36353 6.65884 7.27425 8.84109 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.005305 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.725714 B = 5277.149980 C = 5559.694813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.087 3.913 4 H 0.093 0.907 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.122 4.122 8 C -0.140 4.140 9 C 0.148 3.852 10 H 0.079 0.921 11 N -1.098 6.098 12 S 2.622 3.378 13 O -0.998 6.998 14 O -0.990 6.990 15 C -0.567 4.567 16 C -0.032 4.032 17 C -0.512 4.512 18 H 0.028 0.972 19 C 0.027 3.973 20 N -0.941 5.941 21 Si 0.933 3.067 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.218 1.218 25 C -0.175 4.175 26 C -0.168 4.168 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.420 0.580 39 H 0.127 0.873 40 H 0.150 0.850 41 H 0.269 0.731 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.134 7.442 -15.264 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.028 3.972 4 H 0.111 0.889 5 C -0.177 4.177 6 C -0.147 4.147 7 C -0.159 4.159 8 C -0.180 4.180 9 C 0.041 3.959 10 H 0.097 0.903 11 N -0.859 5.859 12 S 2.718 3.282 13 O -0.988 6.988 14 O -0.979 6.979 15 C -0.699 4.699 16 C -0.034 4.034 17 C -0.549 4.549 18 H 0.047 0.953 19 C -0.172 4.172 20 N -0.579 5.579 21 Si 0.755 3.245 22 H -0.188 1.188 23 H -0.219 1.219 24 H -0.140 1.140 25 C -0.212 4.212 26 C -0.206 4.206 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.257 0.743 39 H 0.145 0.855 40 H 0.168 0.832 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.024 7.442 -14.963 23.856 hybrid contribution -0.555 -0.194 0.747 0.951 sum -17.580 7.248 -14.216 23.742 Atomic orbital electron populations 1.22978 0.79878 1.03570 1.00914 1.87941 1.20965 1.27849 1.95191 1.22432 0.92759 0.85278 0.96715 0.88884 1.22007 1.02234 0.97478 0.95931 1.21488 0.95752 0.96154 1.01344 1.21536 0.98341 1.01447 0.94609 1.22073 1.01780 0.95270 0.98836 1.21053 0.88990 0.90113 0.95754 0.90324 1.55418 1.56173 1.55051 1.19263 1.04359 0.75057 0.74756 0.73990 1.93459 1.71934 1.74068 1.59348 1.93522 1.72176 1.61016 1.71207 1.30103 1.12851 1.13675 1.13254 1.18797 0.98393 0.86993 0.99251 1.20428 0.98116 1.42583 0.93750 0.95340 1.25922 1.02323 0.93208 0.95717 1.70069 1.37514 1.47329 1.02943 0.85977 0.80412 0.78621 0.79482 1.18796 1.21927 1.14038 1.23090 0.98966 1.02352 0.96792 1.23068 0.98414 0.99319 0.99836 0.92612 0.89205 0.93286 0.89878 0.91787 0.90386 0.90297 0.92918 0.90853 0.92530 0.88629 0.74299 0.85471 0.83192 0.92252 0.87231 0.90093 0.90124 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.40 -8.06 10.21 -148.98 -1.52 -9.58 16 3 C 0.09 1.56 2.37 30.59 0.07 1.63 16 4 H 0.09 1.26 7.79 -2.38 -0.02 1.25 16 5 C -0.14 -2.01 5.35 30.59 0.16 -1.85 16 6 C -0.11 -1.44 5.92 30.59 0.18 -1.26 16 7 C -0.12 -2.30 5.77 30.60 0.18 -2.12 16 8 C -0.14 -3.26 5.64 30.60 0.17 -3.09 16 9 C 0.15 3.66 2.58 44.99 0.12 3.77 16 10 H 0.08 2.09 7.29 -2.39 -0.02 2.07 16 11 N -1.10 -31.38 4.50 -169.38 -0.76 -32.14 16 12 S 2.62 105.42 5.11 -56.49 -0.29 105.13 16 13 O -1.00 -43.97 18.08 -127.65 -2.31 -46.28 16 14 O -0.99 -49.01 16.78 -127.65 -2.14 -51.15 16 15 C -0.57 -21.75 5.38 71.98 0.39 -21.37 16 16 C -0.03 -1.47 0.79 -52.93 -0.04 -1.51 16 17 C -0.51 -30.01 8.78 25.60 0.22 -29.78 16 18 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 19 C 0.03 1.61 5.47 84.65 0.46 2.07 16 20 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 21 Si 0.93 42.85 24.96 68.60 1.71 44.57 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.22 -8.65 5.68 99.48 0.57 -8.08 16 25 C -0.17 -7.18 9.96 30.62 0.30 -6.87 16 26 C -0.17 -6.61 7.67 30.62 0.23 -6.38 16 27 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.58 8.09 -2.39 -0.02 0.56 16 30 H 0.08 0.93 7.87 -2.38 -0.02 0.91 16 31 H 0.06 1.06 6.51 -2.39 -0.02 1.04 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.72 7.43 -2.38 -0.02 1.70 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.42 10.29 6.78 -96.74 -0.66 9.64 16 39 H 0.13 4.77 6.03 -2.39 -0.01 4.76 16 40 H 0.15 4.50 8.09 -2.39 -0.02 4.49 16 41 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 42 H 0.11 3.87 8.14 -2.38 -0.02 3.86 16 43 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.08 3.36 7.34 -2.39 -0.02 3.34 16 45 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 Total: -1.00 -79.79 360.00 -1.15 -80.94 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.18 Total: 33.47 kcal Atomic # 6 Polarization: -68.90 SS G_CDS: 3.68 Total: -65.22 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -0.46 Total: -91.87 kcal Atomic # 8 Polarization: -101.04 SS G_CDS: -5.97 Total: -107.01 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.71 Total: 44.57 kcal Atomic # 16 Polarization: 105.42 SS G_CDS: -0.29 Total: 105.13 kcal Total: -79.79 -1.15 -80.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451249785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.315 kcal (2) G-P(sol) polarization free energy of solvation -79.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds