Wall clock time and date at job start Tue Mar 31 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99902 * 2 1 4 4 H 1.08996 * 109.47525 * 30.00022 * 3 2 1 5 5 C 1.53001 * 109.47095 * 270.00074 * 3 2 1 6 6 C 1.53000 * 109.47247 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46972 * 59.99661 * 6 5 3 8 8 C 1.52995 * 109.47548 * 300.00517 * 7 6 5 9 9 C 1.53000 * 109.47407 * 59.99748 * 8 7 6 10 10 H 1.08993 * 109.46619 * 60.00155 * 9 8 7 11 11 N 1.46496 * 109.47084 * 180.02562 * 9 8 7 12 12 S 1.65603 * 119.99980 * 264.99893 * 11 9 8 13 13 O 1.42098 * 104.27615 * 308.93018 * 12 11 9 14 14 O 1.42099 * 104.27689 * 181.07181 * 12 11 9 15 15 C 1.81397 * 104.44848 * 65.00206 * 12 11 9 16 16 C 1.53003 * 109.46997 * 184.36645 * 15 12 11 17 17 C 1.50699 * 115.56158 * 319.75915 * 16 15 12 18 18 H 1.08003 * 119.99452 * 93.01684 * 17 16 15 19 19 C 1.37874 * 120.00499 * 273.01785 * 17 16 15 20 20 N 1.31520 * 119.99656 * 6.89972 * 19 17 16 21 21 Si 1.86798 * 120.00345 * 186.90367 * 19 17 16 22 22 H 1.48501 * 109.47146 * 59.99465 * 21 19 17 23 23 H 1.48494 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46807 * 299.99579 * 21 19 17 25 25 C 1.53001 * 117.49974 * 105.45391 * 16 15 12 26 26 C 1.53000 * 117.49524 * 174.07845 * 16 15 12 27 27 H 1.09000 * 109.47086 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46918 * 299.99814 * 1 2 3 29 29 H 1.08994 * 109.47169 * 59.99885 * 1 2 3 30 30 H 1.09003 * 109.47080 * 60.00378 * 5 3 2 31 31 H 1.08996 * 109.46892 * 300.00336 * 5 3 2 32 32 H 1.09003 * 109.46553 * 300.00270 * 6 5 3 33 33 H 1.08994 * 109.47004 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46999 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46534 * 60.00586 * 7 6 5 36 36 H 1.09006 * 109.46760 * 299.99628 * 8 7 6 37 37 H 1.08996 * 109.47246 * 180.02562 * 8 7 6 38 38 H 0.97000 * 120.00139 * 85.00006 * 11 9 8 39 39 H 1.09003 * 109.47073 * 64.36169 * 15 12 11 40 40 H 1.09006 * 109.47171 * 304.36365 * 15 12 11 41 41 H 0.97006 * 119.99637 * 174.98315 * 20 19 17 42 42 H 1.08994 * 117.49687 * 214.97713 * 25 16 15 43 43 H 1.08997 * 117.49644 * 0.02562 * 25 16 15 44 44 H 1.08997 * 117.50460 * 359.97438 * 26 16 15 45 45 H 1.09000 * 117.49822 * 145.01998 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1892 3.1260 -0.7214 8 6 3.9819 2.6601 0.7210 9 6 3.3590 1.2626 0.7210 10 1 4.0239 0.5686 0.2071 11 7 3.1599 0.8168 2.1022 12 16 4.3044 -0.1245 2.8416 13 8 4.5328 -1.1846 1.9233 14 8 3.7692 -0.3769 4.1335 15 6 5.7652 0.9448 2.9555 16 6 6.9378 0.1468 3.5292 17 6 6.5945 -0.7960 4.6536 18 1 6.3587 -1.8281 4.4398 19 6 6.5814 -0.3412 5.9551 20 7 6.7342 0.9410 6.2051 21 14 6.3467 -1.5459 7.3633 22 1 7.4420 -2.5486 7.3446 23 1 6.3714 -0.8105 8.6531 24 1 5.0408 -2.2364 7.2115 25 6 8.0423 -0.2811 2.5608 26 6 8.3042 0.8337 3.5756 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.2568 1.8015 -1.9563 31 1 2.8828 1.0774 -1.9563 32 1 2.1756 3.8629 -0.9285 33 1 2.9887 3.5005 -2.4702 34 1 4.6332 4.1215 -0.7219 35 1 4.8541 2.4319 -1.2355 36 1 3.3170 3.3543 1.2350 37 1 4.9427 2.6300 1.2348 38 1 2.3578 1.0729 2.5837 39 1 5.5468 1.7900 3.6082 40 1 6.0261 1.3106 1.9623 41 1 6.6525 1.2710 7.1136 42 1 8.5206 -1.2445 2.7369 43 1 7.9338 0.0063 1.5150 44 1 8.3679 1.8538 3.1970 45 1 8.9548 0.6035 4.4193 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451249787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:11 Heat of formation + Delta-G solvation = -110.320846 kcal Electronic energy + Delta-G solvation = -26596.575115 eV Core-core repulsion = 22934.482381 eV Total energy + Delta-G solvation = -3662.092734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.56325 -36.72207 -36.57007 -35.95162 -34.82561 -34.02095 -31.99554 -30.29329 -28.62612 -28.12048 -26.40119 -25.43190 -22.56588 -22.23944 -21.15762 -20.28799 -19.58166 -18.45083 -17.12848 -16.67900 -16.33945 -16.15045 -15.30365 -15.02483 -14.89984 -14.58567 -14.31888 -14.03805 -13.92656 -13.65022 -13.49021 -13.05944 -12.93349 -12.73660 -12.13273 -11.89253 -11.76246 -11.40945 -11.31679 -11.20778 -11.04035 -10.97043 -10.91444 -10.86872 -10.82196 -10.76938 -10.49731 -10.39221 -10.28973 -10.03279 -9.67896 -9.58115 -9.08890 -8.86215 -8.47730 -8.06973 -6.11301 -4.25185 1.28835 3.38136 3.39668 3.48343 3.59011 3.66912 4.44284 4.49769 4.66482 4.77699 4.82316 4.97463 5.02757 5.06520 5.10959 5.19297 5.22817 5.24070 5.27433 5.31514 5.37964 5.53151 5.60142 5.67764 5.68871 5.80574 5.84601 5.92003 5.97371 5.99250 6.09790 6.21298 6.33280 6.38707 6.44829 6.65596 6.74059 6.99856 7.16887 7.22835 7.43190 7.44176 7.82930 8.22822 8.82329 9.51179 10.96200 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.004676 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.280893 B = 5986.633558 C = 6793.489756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.089 3.911 4 H 0.064 0.936 5 C -0.142 4.142 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.146 4.146 9 C 0.154 3.846 10 H 0.098 0.902 11 N -1.125 6.125 12 S 2.623 3.377 13 O -0.971 6.971 14 O -0.944 6.944 15 C -0.562 4.562 16 C 0.049 3.951 17 C -0.540 4.540 18 H 0.068 0.932 19 C 0.097 3.903 20 N -0.869 5.869 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.267 1.267 25 C -0.205 4.205 26 C -0.141 4.141 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.408 0.592 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.264 0.736 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.265 7.480 -14.096 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.029 3.971 4 H 0.083 0.917 5 C -0.180 4.180 6 C -0.155 4.155 7 C -0.160 4.160 8 C -0.185 4.185 9 C 0.046 3.954 10 H 0.116 0.884 11 N -0.879 5.879 12 S 2.720 3.280 13 O -0.962 6.962 14 O -0.934 6.934 15 C -0.694 4.694 16 C 0.047 3.953 17 C -0.577 4.577 18 H 0.086 0.914 19 C -0.110 4.110 20 N -0.503 5.503 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.242 4.242 26 C -0.180 4.180 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.240 0.760 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.082 6.478 -13.750 17.706 hybrid contribution -0.419 0.603 0.890 1.154 sum -9.501 7.080 -12.860 17.487 Atomic orbital electron populations 1.22795 0.81608 1.02774 0.99550 1.88047 1.19054 1.26972 1.94872 1.22363 0.94500 0.85030 0.95211 0.91749 1.22061 1.01693 0.97430 0.96821 1.21522 0.96890 0.96341 1.00756 1.21558 0.97322 1.01849 0.95232 1.22265 1.02357 0.96379 0.97516 1.20806 0.96372 0.95889 0.82371 0.88432 1.56068 1.37076 1.73144 1.21641 1.04648 0.75217 0.74976 0.73197 1.93484 1.86085 1.51632 1.64954 1.93543 1.76942 1.83250 1.39685 1.30108 1.18165 1.14676 1.06448 1.18178 0.84934 0.96875 0.95281 1.20536 1.51336 0.95782 0.90030 0.91414 1.24883 0.92206 0.95169 0.98760 1.69956 1.46430 1.12903 1.21039 0.86661 0.79511 0.81410 0.80789 1.19918 1.21037 1.19140 1.23140 1.07362 0.99591 0.94149 1.22497 1.01869 0.94052 0.99611 0.89651 0.94114 0.94394 0.91599 0.90570 0.91858 0.91504 0.91263 0.91296 0.90882 0.90126 0.75982 0.85474 0.88588 0.92589 0.89722 0.91292 0.91694 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.37 -5.18 10.21 -35.23 -0.36 -5.54 16 3 C 0.09 1.04 2.19 -26.73 -0.06 0.98 16 4 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 5 C -0.14 -1.33 5.54 -26.73 -0.15 -1.48 16 6 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 7 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 8 C -0.15 -1.63 5.49 -26.73 -0.15 -1.78 16 9 C 0.15 2.11 2.38 -67.93 -0.16 1.94 16 10 H 0.10 1.47 7.48 -51.93 -0.39 1.09 16 11 N -1.13 -18.20 5.22 -4.90 -0.03 -18.23 16 12 S 2.62 57.06 4.67 -107.50 -0.50 56.55 16 13 O -0.97 -23.52 17.39 -57.54 -1.00 -24.52 16 14 O -0.94 -24.18 17.09 -57.54 -0.98 -25.17 16 15 C -0.56 -11.84 5.49 37.16 0.20 -11.63 16 16 C 0.05 1.22 1.67 -155.66 -0.26 0.96 16 17 C -0.54 -15.07 6.83 -34.44 -0.24 -15.31 16 18 H 0.07 1.95 7.82 -52.48 -0.41 1.54 16 19 C 0.10 2.71 5.37 -17.82 -0.10 2.61 16 20 N -0.87 -24.32 12.86 55.43 0.71 -23.61 16 21 Si 0.89 22.13 29.55 -169.99 -5.02 17.10 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.21 -4.50 9.88 -26.73 -0.26 -4.77 16 26 C -0.14 -3.24 9.36 -26.73 -0.25 -3.49 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 30 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.96 5.64 -51.93 -0.29 0.67 16 38 H 0.41 5.83 8.80 -34.47 -0.30 5.53 16 39 H 0.13 2.69 8.14 -51.92 -0.42 2.27 16 40 H 0.10 1.67 6.28 -51.92 -0.33 1.34 16 41 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 42 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -34.21 368.79 -9.83 -44.04 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.57 Total: 6.72 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: -0.64 Total: -32.92 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.69 Total: -41.84 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -2.34 Total: -55.23 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 57.06 SS G_CDS: -0.50 Total: 56.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.21 -9.83 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451249787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.281 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds