Wall clock time and date at job start Tue Mar 31 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99902 * 2 1 4 4 H 1.08996 * 109.47525 * 30.00022 * 3 2 1 5 5 C 1.53001 * 109.47095 * 270.00074 * 3 2 1 6 6 C 1.53000 * 109.47247 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46972 * 59.99661 * 6 5 3 8 8 C 1.52995 * 109.47548 * 300.00517 * 7 6 5 9 9 C 1.53000 * 109.47407 * 59.99748 * 8 7 6 10 10 H 1.08993 * 109.46619 * 60.00155 * 9 8 7 11 11 N 1.46496 * 109.47084 * 180.02562 * 9 8 7 12 12 S 1.65603 * 119.99980 * 264.99893 * 11 9 8 13 13 O 1.42098 * 104.27615 * 308.93018 * 12 11 9 14 14 O 1.42099 * 104.27689 * 181.07181 * 12 11 9 15 15 C 1.81397 * 104.44848 * 65.00206 * 12 11 9 16 16 C 1.53003 * 109.46997 * 184.36645 * 15 12 11 17 17 C 1.50699 * 115.56158 * 319.75915 * 16 15 12 18 18 H 1.08003 * 119.99452 * 93.01684 * 17 16 15 19 19 C 1.37874 * 120.00499 * 273.01785 * 17 16 15 20 20 N 1.31520 * 119.99656 * 6.89972 * 19 17 16 21 21 Si 1.86798 * 120.00345 * 186.90367 * 19 17 16 22 22 H 1.48501 * 109.47146 * 59.99465 * 21 19 17 23 23 H 1.48494 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46807 * 299.99579 * 21 19 17 25 25 C 1.53001 * 117.49974 * 105.45391 * 16 15 12 26 26 C 1.53000 * 117.49524 * 174.07845 * 16 15 12 27 27 H 1.09000 * 109.47086 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46918 * 299.99814 * 1 2 3 29 29 H 1.08994 * 109.47169 * 59.99885 * 1 2 3 30 30 H 1.09003 * 109.47080 * 60.00378 * 5 3 2 31 31 H 1.08996 * 109.46892 * 300.00336 * 5 3 2 32 32 H 1.09003 * 109.46553 * 300.00270 * 6 5 3 33 33 H 1.08994 * 109.47004 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46999 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46534 * 60.00586 * 7 6 5 36 36 H 1.09006 * 109.46760 * 299.99628 * 8 7 6 37 37 H 1.08996 * 109.47246 * 180.02562 * 8 7 6 38 38 H 0.97000 * 120.00139 * 85.00006 * 11 9 8 39 39 H 1.09003 * 109.47073 * 64.36169 * 15 12 11 40 40 H 1.09006 * 109.47171 * 304.36365 * 15 12 11 41 41 H 0.97006 * 119.99637 * 174.98315 * 20 19 17 42 42 H 1.08994 * 117.49687 * 214.97713 * 25 16 15 43 43 H 1.08997 * 117.49644 * 0.02562 * 25 16 15 44 44 H 1.08997 * 117.50460 * 359.97438 * 26 16 15 45 45 H 1.09000 * 117.49822 * 145.01998 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1892 3.1260 -0.7214 8 6 3.9819 2.6601 0.7210 9 6 3.3590 1.2626 0.7210 10 1 4.0239 0.5686 0.2071 11 7 3.1599 0.8168 2.1022 12 16 4.3044 -0.1245 2.8416 13 8 4.5328 -1.1846 1.9233 14 8 3.7692 -0.3769 4.1335 15 6 5.7652 0.9448 2.9555 16 6 6.9378 0.1468 3.5292 17 6 6.5945 -0.7960 4.6536 18 1 6.3587 -1.8281 4.4398 19 6 6.5814 -0.3412 5.9551 20 7 6.7342 0.9410 6.2051 21 14 6.3467 -1.5459 7.3633 22 1 7.4420 -2.5486 7.3446 23 1 6.3714 -0.8105 8.6531 24 1 5.0408 -2.2364 7.2115 25 6 8.0423 -0.2811 2.5608 26 6 8.3042 0.8337 3.5756 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.2568 1.8015 -1.9563 31 1 2.8828 1.0774 -1.9563 32 1 2.1756 3.8629 -0.9285 33 1 2.9887 3.5005 -2.4702 34 1 4.6332 4.1215 -0.7219 35 1 4.8541 2.4319 -1.2355 36 1 3.3170 3.3543 1.2350 37 1 4.9427 2.6300 1.2348 38 1 2.3578 1.0729 2.5837 39 1 5.5468 1.7900 3.6082 40 1 6.0261 1.3106 1.9623 41 1 6.6525 1.2710 7.1136 42 1 8.5206 -1.2445 2.7369 43 1 7.9338 0.0063 1.5150 44 1 8.3679 1.8538 3.1970 45 1 8.9548 0.6035 4.4193 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451249787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:11 Heat of formation + Delta-G solvation = -134.991726 kcal Electronic energy + Delta-G solvation = -26597.644925 eV Core-core repulsion = 22934.482381 eV Total energy + Delta-G solvation = -3663.162544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.46035 -38.53904 -37.84062 -37.44875 -36.66790 -35.11618 -34.08352 -31.11040 -29.86433 -29.56085 -27.50597 -27.21387 -23.43215 -23.11641 -22.93699 -21.49105 -21.08856 -20.07051 -18.51366 -18.32170 -17.76267 -17.30948 -16.91402 -16.49713 -16.23659 -16.02000 -15.67932 -15.49319 -14.97423 -14.91558 -14.53701 -14.38003 -13.98210 -13.80132 -13.72465 -13.60787 -13.05814 -12.90838 -12.84817 -12.81494 -12.75595 -12.55295 -12.42128 -12.21297 -12.08256 -12.01832 -11.88445 -11.70065 -11.54446 -11.52570 -11.23738 -10.86422 -10.56816 -10.48483 -10.22010 -9.88346 -8.22417 -6.39158 -0.40510 1.35600 1.39755 1.46092 2.13942 2.40080 2.78972 3.06841 3.12638 3.32947 3.57060 3.69079 3.85984 4.04176 4.05013 4.17039 4.21729 4.25370 4.30029 4.36756 4.49615 4.52613 4.57600 4.58884 4.60224 4.72558 4.84655 4.85529 4.87343 4.98356 5.00014 5.14332 5.20340 5.21481 5.25220 5.33568 5.37931 5.42976 5.55279 5.63059 5.68529 6.17851 6.21252 6.34913 6.68562 7.37660 8.84315 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.004676 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.280893 B = 5986.633558 C = 6793.489756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.409 6.409 3 C 0.086 3.914 4 H 0.083 0.917 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.145 4.145 9 C 0.143 3.857 10 H 0.078 0.922 11 N -1.111 6.111 12 S 2.630 3.370 13 O -1.005 7.005 14 O -0.993 6.993 15 C -0.549 4.549 16 C 0.010 3.990 17 C -0.555 4.555 18 H 0.044 0.956 19 C 0.059 3.941 20 N -0.884 5.884 21 Si 0.925 3.075 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.281 1.281 25 C -0.192 4.192 26 C -0.135 4.135 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.267 0.733 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 9.582 -15.800 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.328 6.328 3 C 0.027 3.973 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.150 4.150 7 C -0.159 4.159 8 C -0.184 4.184 9 C 0.036 3.964 10 H 0.096 0.904 11 N -0.869 5.869 12 S 2.728 3.272 13 O -0.995 6.995 14 O -0.983 6.983 15 C -0.682 4.682 16 C 0.008 3.992 17 C -0.593 4.593 18 H 0.062 0.938 19 C -0.146 4.146 20 N -0.519 5.519 21 Si 0.750 3.250 22 H -0.188 1.188 23 H -0.193 1.193 24 H -0.207 1.207 25 C -0.229 4.229 26 C -0.174 4.174 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.537 8.572 -15.450 20.078 hybrid contribution -0.314 -0.069 1.346 1.384 sum -9.852 8.503 -14.105 19.191 Atomic orbital electron populations 1.22974 0.79949 1.03425 1.01011 1.87998 1.21094 1.28532 1.95183 1.22500 0.93428 0.84735 0.96672 0.89943 1.22045 1.02461 0.98082 0.94997 1.21522 0.96226 0.95437 1.01825 1.21590 0.98179 1.02542 0.93594 1.22272 1.01913 0.94858 0.99358 1.21153 0.97853 0.96914 0.80473 0.90362 1.55538 1.36118 1.72540 1.22753 1.04068 0.75817 0.75294 0.72049 1.93436 1.86801 1.53876 1.65355 1.93469 1.78030 1.84566 1.42282 1.29918 1.16275 1.13611 1.08368 1.18346 0.86733 0.98048 0.96042 1.20678 1.51429 0.95499 0.91691 0.93791 1.25410 0.92406 0.96460 1.00356 1.69981 1.47059 1.13408 1.21409 0.86119 0.78859 0.80397 0.79624 1.18849 1.19342 1.20689 1.23220 1.05083 0.99146 0.95446 1.22438 1.00048 0.95540 0.99335 0.89587 0.93366 0.92137 0.90047 0.91739 0.90603 0.89800 0.89556 0.91675 0.89421 0.90981 0.74792 0.85554 0.84747 0.92403 0.90340 0.88056 0.89266 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.82 113.37 1.23 1.65 16 2 O -0.41 -11.04 10.21 -148.98 -1.52 -12.57 16 3 C 0.09 1.85 2.19 30.59 0.07 1.92 16 4 H 0.08 1.44 7.79 -2.39 -0.02 1.43 16 5 C -0.14 -2.22 5.54 30.59 0.17 -2.05 16 6 C -0.11 -1.37 5.92 30.59 0.18 -1.19 16 7 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 8 C -0.14 -2.86 5.49 30.59 0.17 -2.69 16 9 C 0.14 3.73 2.38 44.99 0.11 3.84 16 10 H 0.08 2.34 7.48 -2.39 -0.02 2.32 16 11 N -1.11 -35.45 5.22 -169.40 -0.89 -36.33 16 12 S 2.63 115.91 4.67 -56.49 -0.26 115.64 16 13 O -1.00 -49.75 17.39 -127.65 -2.22 -51.97 16 14 O -0.99 -52.52 17.09 -127.65 -2.18 -54.71 16 15 C -0.55 -22.63 5.49 71.98 0.40 -22.24 16 16 C 0.01 0.50 1.67 -52.93 -0.09 0.41 16 17 C -0.56 -31.65 6.83 25.60 0.17 -31.47 16 18 H 0.04 2.63 7.82 -2.91 -0.02 2.61 16 19 C 0.06 3.31 5.37 84.65 0.45 3.77 16 20 N -0.88 -49.62 12.86 21.45 0.28 -49.34 16 21 Si 0.92 45.73 29.55 68.60 2.03 47.75 16 22 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -14.46 7.11 99.48 0.71 -13.76 16 25 C -0.19 -8.16 9.88 30.60 0.30 -7.86 16 26 C -0.13 -6.01 9.36 30.60 0.29 -5.73 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 0.81 8.09 -2.39 -0.02 0.79 16 29 H 0.06 0.84 7.87 -2.39 -0.02 0.82 16 30 H 0.08 1.08 7.87 -2.39 -0.02 1.06 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.07 1.53 5.64 -2.39 -0.01 1.52 16 38 H 0.42 11.74 8.80 -96.74 -0.85 10.89 16 39 H 0.13 5.24 8.14 -2.39 -0.02 5.22 16 40 H 0.13 4.37 6.28 -2.39 -0.01 4.36 16 41 H 0.27 14.28 8.32 -92.70 -0.77 13.50 16 42 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.10 3.62 8.09 -2.39 -0.02 3.60 16 44 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 45 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -75.31 368.79 -1.02 -76.33 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.12 Total: 28.42 kcal Atomic # 6 Polarization: -66.87 SS G_CDS: 3.63 Total: -63.25 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -0.61 Total: -85.67 kcal Atomic # 8 Polarization: -113.32 SS G_CDS: -5.92 Total: -119.24 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: 115.91 SS G_CDS: -0.26 Total: 115.64 kcal Total: -75.31 -1.02 -76.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451249787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.657 kcal (2) G-P(sol) polarization free energy of solvation -75.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds