Wall clock time and date at job start Tue Mar 31 2020 11:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00246 * 2 1 4 4 C 1.52999 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.50709 * 110.28377 * 60.67859 * 4 3 2 6 6 O 1.20824 * 120.00213 * 119.32703 * 5 4 3 7 7 O 1.34228 * 119.99846 * 299.32059 * 5 4 3 8 8 C 1.45200 * 116.99947 * 180.02562 * 7 5 4 9 9 C 1.54256 * 110.32567 * 298.54920 * 4 3 2 10 10 C 1.54377 * 105.05892 * 240.99771 * 9 4 3 11 11 N 1.48560 * 104.59882 * 336.14816 * 10 9 4 12 12 C 1.46901 * 111.00129 * 159.03553 * 11 10 9 13 13 C 1.53000 * 109.46769 * 69.87826 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 S 1.81002 * 109.47152 * 179.97438 * 14 13 12 16 16 C 1.76198 * 100.00092 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99945 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00286 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47665 * 119.99602 * 20 18 16 23 23 H 1.48503 * 109.46798 * 239.99988 * 20 18 16 24 24 C 1.48561 * 104.21765 * 39.48150 * 11 10 9 25 25 H 1.08997 * 109.47241 * 59.99232 * 1 2 3 26 26 H 1.08998 * 109.47728 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46422 * 300.00281 * 1 2 3 28 28 H 1.09002 * 109.47353 * 60.00126 * 3 2 1 29 29 H 1.09000 * 109.47199 * 300.00202 * 3 2 1 30 30 H 1.09002 * 109.46785 * 299.99905 * 8 7 5 31 31 H 1.09001 * 109.47069 * 60.00138 * 8 7 5 32 32 H 1.09003 * 109.46859 * 179.97438 * 8 7 5 33 33 H 1.09005 * 110.32415 * 122.10678 * 9 4 3 34 34 H 1.08991 * 110.32337 * 359.89507 * 9 4 3 35 35 H 1.09000 * 110.41756 * 217.36625 * 10 9 4 36 36 H 1.09008 * 110.40891 * 94.92599 * 10 9 4 37 37 H 1.09002 * 109.47401 * 309.87533 * 12 11 10 38 38 H 1.09001 * 109.46874 * 189.87546 * 12 11 10 39 39 H 1.09001 * 109.47194 * 299.99524 * 13 12 11 40 40 H 1.08992 * 109.47399 * 59.99697 * 13 12 11 41 41 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 42 42 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 43 43 H 0.96996 * 119.99880 * 180.02562 * 19 18 16 44 44 H 1.09005 * 110.41459 * 79.30092 * 24 11 10 45 45 H 1.09001 * 110.41012 * 201.73670 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0021 0.4529 -1.2316 6 8 4.7383 1.0012 -2.0173 7 8 3.6001 -0.8079 -1.4561 8 6 4.0893 -1.4509 -2.6625 9 6 4.0145 0.4532 1.2716 10 6 4.9145 1.4709 2.0047 11 7 5.3788 2.3961 0.9391 12 6 5.8209 3.6759 1.5088 13 6 7.1226 3.4661 2.2848 14 6 7.5828 4.7989 2.8788 15 16 9.1224 4.5506 3.7975 16 6 9.4147 6.1962 4.3552 17 1 8.7240 6.9850 4.0959 18 6 10.5332 6.4792 5.1269 19 7 11.3753 5.5179 5.4425 20 14 10.8428 8.2236 5.7187 21 1 9.7563 9.1115 5.2324 22 1 10.8726 8.2449 7.2033 23 1 12.1458 8.7016 5.1905 24 6 4.1864 2.5825 0.0728 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.7671 -0.8811 -3.5341 31 1 5.1783 -1.4910 -2.6368 32 1 3.6902 -2.4635 -2.7219 33 1 4.5872 -0.4349 1.0043 34 1 3.1632 0.1821 1.8959 35 1 5.7632 0.9654 2.4654 36 1 4.3408 2.0138 2.7560 37 1 5.0538 4.0581 2.1824 38 1 5.9885 4.3928 0.7050 39 1 6.9550 2.7492 3.0887 40 1 7.8896 3.0839 1.6113 41 1 7.7504 5.5162 2.0753 42 1 6.8156 5.1807 3.5524 43 1 12.1567 5.7155 5.9821 44 1 3.4987 3.2993 0.5216 45 1 4.4867 2.9138 -0.9212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451335485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:05 Heat of formation + Delta-G solvation = -132.649978 kcal Electronic energy + Delta-G solvation = -24579.634230 eV Core-core repulsion = 20916.573232 eV Total energy + Delta-G solvation = -3663.060998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15082 -39.09556 -37.91261 -36.51176 -34.58717 -32.41191 -31.67747 -29.77446 -28.00655 -27.49097 -25.93420 -25.36502 -24.58784 -23.04201 -21.98499 -20.54452 -19.78829 -17.81673 -17.43313 -17.20052 -16.64634 -16.54199 -16.02602 -15.76163 -15.28195 -14.82698 -14.78658 -14.57111 -14.03077 -14.00125 -13.49262 -13.45304 -13.13076 -12.84886 -12.69059 -12.35107 -12.28359 -12.02110 -11.87572 -11.55748 -11.48334 -11.45328 -11.20281 -11.09554 -11.04898 -10.88710 -10.74531 -10.58988 -10.44499 -10.27310 -10.04904 -9.50255 -9.04278 -8.54029 -8.26107 -6.49484 -6.20426 -3.90174 2.06566 2.49968 3.16860 3.22399 3.24603 3.31524 3.58135 3.90150 4.18206 4.24487 4.27480 4.46509 4.67548 4.81760 4.88310 4.92404 4.98437 4.99687 5.00497 5.03785 5.15445 5.19209 5.24209 5.26901 5.29793 5.35173 5.41046 5.53486 5.62720 5.68137 5.76026 5.83244 5.87651 5.93339 6.10840 6.25340 6.35817 6.60178 6.67161 6.74638 6.81169 7.00128 7.63180 7.64586 8.39325 9.25892 10.87828 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.002183 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.259261 B =12825.690141 C =13234.658962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.075 3.925 4 C -0.054 4.054 5 C 0.481 3.519 6 O -0.498 6.498 7 O -0.339 6.339 8 C 0.034 3.966 9 C -0.103 4.103 10 C 0.026 3.974 11 N -0.504 5.504 12 C 0.050 3.950 13 C -0.092 4.092 14 C -0.112 4.112 15 S -0.133 6.133 16 C -0.515 4.515 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.869 5.869 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.048 3.952 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.058 0.942 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.314 -12.810 -12.741 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.002 4.002 4 C -0.056 4.056 5 C 0.323 3.677 6 O -0.385 6.385 7 O -0.255 6.255 8 C -0.060 4.060 9 C -0.141 4.141 10 C -0.102 4.102 11 N -0.228 5.228 12 C -0.079 4.079 13 C -0.130 4.130 14 C -0.261 4.261 15 S 0.096 5.904 16 C -0.663 4.663 17 H 0.090 0.910 18 C -0.139 4.139 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.080 4.080 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.725 -14.029 -13.030 28.958 hybrid contribution -1.257 2.798 0.447 3.099 sum -22.981 -11.231 -12.584 28.507 Atomic orbital electron populations 1.22759 0.80891 1.02983 0.99908 1.88012 1.19526 1.26267 1.95348 1.22478 0.90414 0.85951 1.01398 1.21280 0.94852 0.96453 0.92986 1.23080 0.77544 0.80542 0.86568 1.90674 1.33546 1.67667 1.46563 1.86604 1.67545 1.27885 1.43469 1.23256 1.00221 0.97416 0.85119 1.22342 0.99928 0.98458 0.93363 1.23286 0.98615 0.94494 0.93811 1.65445 1.28838 1.12205 1.16291 1.22367 0.97337 0.90113 0.98072 1.21221 0.95789 0.96955 0.99084 1.23231 1.02281 0.98852 1.01775 1.84651 1.24286 1.16651 1.64854 1.22733 1.12326 0.93367 1.37877 0.90954 1.25024 0.95084 0.98322 0.95465 1.70037 1.12540 1.31938 1.36012 0.86113 0.78289 0.82688 0.78426 1.19641 1.20600 1.20578 1.23104 0.91801 0.92149 1.00933 0.94183 0.89355 0.94009 0.91501 0.92626 0.92228 0.91936 0.88246 0.90073 0.89369 0.89007 0.93120 0.94503 0.90541 0.91695 0.90683 0.92121 0.92390 0.92389 0.92396 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.25 9.07 -50.69 -0.46 -3.70 16 3 C 0.07 0.60 4.55 37.16 0.17 0.77 16 4 C -0.05 -0.55 0.78 -154.28 -0.12 -0.67 16 5 C 0.48 5.89 6.37 36.01 0.23 6.12 16 6 O -0.50 -7.43 15.16 -18.75 -0.28 -7.71 16 7 O -0.34 -3.76 9.44 -44.80 -0.42 -4.18 16 8 C 0.03 0.28 10.56 101.05 1.07 1.35 16 9 C -0.10 -1.01 6.05 -25.35 -0.15 -1.17 16 10 C 0.03 0.29 5.74 -2.18 -0.01 0.27 16 11 N -0.50 -6.51 5.37 -229.96 -1.24 -7.74 16 12 C 0.05 0.69 4.81 -3.82 -0.02 0.67 16 13 C -0.09 -1.55 5.27 -26.73 -0.14 -1.69 16 14 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 15 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 16 C -0.51 -14.94 9.50 30.94 0.29 -14.65 16 17 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 18 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 19 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 20 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.05 0.53 5.40 -2.18 -0.01 0.52 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 34 H 0.09 0.75 7.52 -51.93 -0.39 0.36 16 35 H 0.09 1.07 7.76 -51.93 -0.40 0.67 16 36 H 0.05 0.52 7.82 -51.92 -0.41 0.12 16 37 H 0.04 0.47 7.88 -51.93 -0.41 0.06 16 38 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 39 H 0.06 1.09 7.26 -51.93 -0.38 0.71 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 42 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 45 H 0.10 1.27 6.85 -51.93 -0.36 0.91 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -34.17 380.05 -8.50 -42.67 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.76 Total: -3.04 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 2.53 Total: -7.36 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: -0.50 Total: -33.29 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -1.17 Total: -15.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.17 -8.50 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451335485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.982 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds