Wall clock time and date at job start Tue Mar 31 2020 11:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00246 * 2 1 4 4 C 1.52999 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.50709 * 110.28377 * 60.67859 * 4 3 2 6 6 O 1.20824 * 120.00213 * 119.32703 * 5 4 3 7 7 O 1.34228 * 119.99846 * 299.32059 * 5 4 3 8 8 C 1.45200 * 116.99947 * 180.02562 * 7 5 4 9 9 C 1.54256 * 110.32567 * 298.54920 * 4 3 2 10 10 C 1.54377 * 105.05892 * 240.99771 * 9 4 3 11 11 N 1.48560 * 104.59882 * 336.14816 * 10 9 4 12 12 C 1.46901 * 111.00129 * 159.03553 * 11 10 9 13 13 C 1.53000 * 109.46769 * 69.87826 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 S 1.81002 * 109.47152 * 179.97438 * 14 13 12 16 16 C 1.76198 * 100.00092 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99945 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00286 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47665 * 119.99602 * 20 18 16 23 23 H 1.48503 * 109.46798 * 239.99988 * 20 18 16 24 24 C 1.48561 * 104.21765 * 39.48150 * 11 10 9 25 25 H 1.08997 * 109.47241 * 59.99232 * 1 2 3 26 26 H 1.08998 * 109.47728 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46422 * 300.00281 * 1 2 3 28 28 H 1.09002 * 109.47353 * 60.00126 * 3 2 1 29 29 H 1.09000 * 109.47199 * 300.00202 * 3 2 1 30 30 H 1.09002 * 109.46785 * 299.99905 * 8 7 5 31 31 H 1.09001 * 109.47069 * 60.00138 * 8 7 5 32 32 H 1.09003 * 109.46859 * 179.97438 * 8 7 5 33 33 H 1.09005 * 110.32415 * 122.10678 * 9 4 3 34 34 H 1.08991 * 110.32337 * 359.89507 * 9 4 3 35 35 H 1.09000 * 110.41756 * 217.36625 * 10 9 4 36 36 H 1.09008 * 110.40891 * 94.92599 * 10 9 4 37 37 H 1.09002 * 109.47401 * 309.87533 * 12 11 10 38 38 H 1.09001 * 109.46874 * 189.87546 * 12 11 10 39 39 H 1.09001 * 109.47194 * 299.99524 * 13 12 11 40 40 H 1.08992 * 109.47399 * 59.99697 * 13 12 11 41 41 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 42 42 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 43 43 H 0.96996 * 119.99880 * 180.02562 * 19 18 16 44 44 H 1.09005 * 110.41459 * 79.30092 * 24 11 10 45 45 H 1.09001 * 110.41012 * 201.73670 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0021 0.4529 -1.2316 6 8 4.7383 1.0012 -2.0173 7 8 3.6001 -0.8079 -1.4561 8 6 4.0893 -1.4509 -2.6625 9 6 4.0145 0.4532 1.2716 10 6 4.9145 1.4709 2.0047 11 7 5.3788 2.3961 0.9391 12 6 5.8209 3.6759 1.5088 13 6 7.1226 3.4661 2.2848 14 6 7.5828 4.7989 2.8788 15 16 9.1224 4.5506 3.7975 16 6 9.4147 6.1962 4.3552 17 1 8.7240 6.9850 4.0959 18 6 10.5332 6.4792 5.1269 19 7 11.3753 5.5179 5.4425 20 14 10.8428 8.2236 5.7187 21 1 9.7563 9.1115 5.2324 22 1 10.8726 8.2449 7.2033 23 1 12.1458 8.7016 5.1905 24 6 4.1864 2.5825 0.0728 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.7671 -0.8811 -3.5341 31 1 5.1783 -1.4910 -2.6368 32 1 3.6902 -2.4635 -2.7219 33 1 4.5872 -0.4349 1.0043 34 1 3.1632 0.1821 1.8959 35 1 5.7632 0.9654 2.4654 36 1 4.3408 2.0138 2.7560 37 1 5.0538 4.0581 2.1824 38 1 5.9885 4.3928 0.7050 39 1 6.9550 2.7492 3.0887 40 1 7.8896 3.0839 1.6113 41 1 7.7504 5.5162 2.0753 42 1 6.8156 5.1807 3.5524 43 1 12.1567 5.7155 5.9821 44 1 3.4987 3.2993 0.5216 45 1 4.4867 2.9138 -0.9212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451335485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:04 Heat of formation + Delta-G solvation = -155.080743 kcal Electronic energy + Delta-G solvation = -24580.606901 eV Core-core repulsion = 20916.573232 eV Total energy + Delta-G solvation = -3664.033669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02241 -39.96440 -38.55791 -37.44728 -35.70754 -34.59879 -32.79340 -30.62374 -28.74179 -28.21873 -27.75469 -26.57251 -25.38591 -23.94233 -23.17023 -21.63275 -20.66732 -19.54033 -18.63921 -18.03556 -17.49904 -17.13165 -16.94291 -16.89533 -16.41921 -16.37008 -16.02580 -15.77577 -15.13951 -15.01337 -14.76649 -14.36567 -14.28577 -13.88641 -13.54557 -13.40318 -13.25869 -13.09985 -13.02115 -12.92725 -12.85276 -12.52544 -12.45534 -12.32284 -12.26737 -12.11284 -11.87802 -11.73671 -11.56634 -11.35091 -11.31513 -11.14930 -10.58720 -10.30599 -9.47227 -8.66388 -8.36998 -6.13297 1.15446 1.31729 1.38702 1.49854 1.71640 1.75579 2.28539 2.56617 2.97148 2.99819 3.31700 3.38405 3.49619 3.75970 3.93178 4.00740 4.09198 4.21375 4.30215 4.30974 4.32523 4.34883 4.39390 4.45880 4.47293 4.58651 4.60779 4.63850 4.69554 4.72206 4.79712 4.82855 4.90164 4.94805 4.97893 5.06754 5.18964 5.31286 5.40339 5.40504 5.82290 5.98381 6.18845 6.19503 6.75339 7.05140 8.72735 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.002183 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.259261 B =12825.690141 C =13234.658962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.078 3.922 4 C -0.053 4.053 5 C 0.478 3.522 6 O -0.534 6.534 7 O -0.344 6.344 8 C 0.027 3.973 9 C -0.095 4.095 10 C 0.025 3.975 11 N -0.527 5.527 12 C 0.062 3.938 13 C -0.080 4.080 14 C -0.086 4.086 15 S -0.202 6.202 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.013 3.987 19 N -0.908 5.908 20 Si 0.996 3.004 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.051 3.949 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.271 0.729 44 H 0.084 0.916 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.612 -12.080 -12.517 30.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.001 3.999 4 C -0.055 4.055 5 C 0.322 3.678 6 O -0.423 6.423 7 O -0.259 6.259 8 C -0.066 4.066 9 C -0.133 4.133 10 C -0.102 4.102 11 N -0.251 5.251 12 C -0.067 4.067 13 C -0.119 4.119 14 C -0.235 4.235 15 S 0.026 5.974 16 C -0.683 4.683 17 H 0.092 0.908 18 C -0.192 4.192 19 N -0.545 5.545 20 Si 0.818 3.182 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.077 4.077 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.046 -13.326 -12.811 30.330 hybrid contribution -0.597 2.447 0.292 2.535 sum -24.643 -10.879 -12.519 29.705 Atomic orbital electron populations 1.22917 0.79370 1.03851 1.00814 1.87974 1.21193 1.26609 1.95552 1.22482 0.88533 0.86124 1.02741 1.21325 0.96576 0.95629 0.91950 1.23575 0.76738 0.80733 0.86777 1.90656 1.35219 1.68429 1.47998 1.86600 1.67393 1.27429 1.44485 1.23503 1.00005 0.98805 0.84277 1.22288 1.00117 0.97534 0.93322 1.23308 0.98612 0.94521 0.93784 1.65344 1.30627 1.11926 1.17204 1.22154 0.95807 0.90815 0.97965 1.21089 0.97121 0.94747 0.98949 1.23142 0.98606 1.00895 1.00857 1.84699 1.29123 1.17099 1.66436 1.23066 1.12897 0.93927 1.38434 0.90846 1.26105 0.94574 1.03216 0.95315 1.70172 1.13143 1.34476 1.36684 0.84939 0.78463 0.76682 0.78107 1.18570 1.19593 1.19789 1.23065 0.91503 0.93257 0.99832 0.93574 0.88613 0.92766 0.89328 0.92039 0.92103 0.92697 0.85184 0.91257 0.87487 0.90177 0.91663 0.92779 0.90444 0.91676 0.92342 0.92026 0.91557 0.91997 0.89812 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.39 -5.95 9.07 -134.20 -1.22 -7.17 16 3 C 0.08 1.05 4.55 71.98 0.33 1.38 16 4 C -0.05 -1.00 0.78 -52.03 -0.04 -1.04 16 5 C 0.48 11.51 6.37 71.24 0.45 11.97 16 6 O -0.53 -16.14 15.16 21.97 0.33 -15.81 16 7 O -0.34 -7.37 9.44 -46.09 -0.44 -7.80 16 8 C 0.03 0.43 10.56 113.37 1.20 1.63 16 9 C -0.09 -1.71 6.05 31.49 0.19 -1.52 16 10 C 0.03 0.52 5.74 86.45 0.50 1.02 16 11 N -0.53 -12.99 5.37 -881.47 -4.73 -17.72 16 12 C 0.06 1.61 4.81 86.30 0.41 2.02 16 13 C -0.08 -2.67 5.27 30.59 0.16 -2.51 16 14 C -0.09 -3.47 5.67 71.98 0.41 -3.07 16 15 S -0.20 -11.00 21.44 -56.49 -1.21 -12.21 16 16 C -0.54 -31.32 9.50 67.95 0.65 -30.68 16 17 H 0.07 4.13 7.80 -2.91 -0.02 4.10 16 18 C 0.01 0.72 5.49 84.86 0.47 1.19 16 19 N -0.91 -55.58 13.22 21.65 0.29 -55.30 16 20 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 C 0.05 1.04 5.40 86.45 0.47 1.50 16 25 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 32 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.42 7.69 -2.38 -0.02 1.40 16 34 H 0.11 1.53 7.52 -2.39 -0.02 1.52 16 35 H 0.08 1.83 7.76 -2.39 -0.02 1.81 16 36 H 0.07 1.17 7.82 -2.38 -0.02 1.15 16 37 H 0.05 1.22 7.88 -2.39 -0.02 1.20 16 38 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 39 H 0.06 2.16 7.26 -2.39 -0.02 2.14 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.08 1.26 7.71 -2.38 -0.02 1.24 16 45 H 0.09 2.08 6.85 -2.39 -0.02 2.07 16 Total: -1.00 -74.81 380.05 2.43 -72.38 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.95 Total: 13.87 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 6.44 Total: -16.61 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -4.45 Total: -73.02 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.32 Total: -30.78 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -1.21 Total: -12.21 kcal Total: -74.81 2.43 -72.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451335485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.701 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds