Wall clock time and date at job start Tue Mar 31 2020 11:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00115 * 2 1 4 4 C 1.53001 * 109.46938 * 293.57574 * 3 2 1 5 5 H 1.09007 * 110.01674 * 56.49594 * 4 3 2 6 6 C 1.53873 * 110.03490 * 177.88776 * 4 3 2 7 7 C 1.54264 * 106.59934 * 119.28384 * 6 4 3 8 8 C 1.54888 * 104.19524 * 23.61090 * 7 6 4 9 9 C 1.54262 * 110.03512 * 295.05884 * 4 3 2 10 10 H 1.09002 * 110.48624 * 335.78216 * 9 4 3 11 11 O 1.42897 * 110.48957 * 98.42444 * 9 4 3 12 12 S 1.65605 * 119.99947 * 179.97438 * 2 1 3 13 13 O 1.42093 * 104.27796 * 24.80082 * 12 2 1 14 14 O 1.42095 * 104.27515 * 152.66264 * 12 2 1 15 15 C 1.81405 * 104.44795 * 268.73045 * 12 2 1 16 16 C 1.52993 * 109.46969 * 182.31475 * 15 12 2 17 17 C 1.50699 * 115.55237 * 39.56557 * 16 15 12 18 18 H 1.08002 * 119.99760 * 270.61870 * 17 16 15 19 19 C 1.37875 * 119.99875 * 90.61734 * 17 16 15 20 20 N 1.31516 * 119.99909 * 181.48037 * 19 17 16 21 21 Si 1.86798 * 120.00162 * 1.48074 * 19 17 16 22 22 H 1.48501 * 109.47079 * 92.94812 * 21 19 17 23 23 H 1.48496 * 109.47143 * 212.94540 * 21 19 17 24 24 H 1.48494 * 109.47178 * 332.94619 * 21 19 17 25 25 C 1.53004 * 117.49801 * 253.85566 * 16 15 12 26 26 C 1.52996 * 60.00236 * 252.51238 * 25 16 15 27 27 H 1.09000 * 109.47170 * 265.00412 * 1 2 3 28 28 H 1.09002 * 109.47194 * 25.00838 * 1 2 3 29 29 H 1.09005 * 109.47134 * 145.00310 * 1 2 3 30 30 H 1.09001 * 109.46872 * 53.57208 * 3 2 1 31 31 H 1.08993 * 109.47280 * 173.57980 * 3 2 1 32 32 H 1.08999 * 110.03124 * 238.57403 * 6 4 3 33 33 H 1.09004 * 110.02605 * 359.97438 * 6 4 3 34 34 H 1.09002 * 110.48598 * 142.29319 * 7 6 4 35 35 H 1.08994 * 110.48640 * 264.80307 * 7 6 4 36 36 H 1.09006 * 110.75524 * 80.37185 * 8 7 6 37 37 H 1.08997 * 110.75726 * 203.74159 * 8 7 6 38 38 H 0.96701 * 114.00166 * 180.02562 * 11 9 4 39 39 H 1.08997 * 109.47043 * 302.31937 * 15 12 2 40 40 H 1.09006 * 109.46864 * 62.31593 * 15 12 2 41 41 H 0.96998 * 120.00173 * 180.02562 * 20 19 17 42 42 H 1.08999 * 117.49922 * 0.02562 * 25 16 15 43 43 H 1.08998 * 117.49722 * 145.02165 * 25 16 15 44 44 H 1.09001 * 117.49893 * 252.51128 * 26 25 16 45 45 H 1.08997 * 117.49936 * 107.49171 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.9529 1.9988 -1.3221 5 1 0.8835 2.1444 -1.4757 6 6 2.6741 3.3581 -1.3150 7 6 3.6847 3.3268 -2.4802 8 6 3.1106 2.2667 -3.4526 9 6 2.5502 1.1891 -2.4914 10 1 3.3514 0.5408 -2.1365 11 8 1.5337 0.4213 -3.1388 12 16 2.2930 -1.4342 0.0006 13 8 1.3857 -2.3629 -0.5766 14 8 3.5276 -1.1263 -0.6319 15 6 2.5530 -1.8059 1.7571 16 6 3.3675 -3.0941 1.8905 17 6 4.4839 -3.2637 0.8925 18 1 4.2933 -3.7480 -0.0538 19 6 5.7485 -2.8005 1.1876 20 7 6.7159 -2.9223 0.3050 21 14 6.0879 -1.9999 2.8408 22 1 6.5785 -3.0256 3.7961 23 1 7.1182 -0.9431 2.6769 24 1 4.8368 -1.3946 3.3638 25 6 2.6273 -4.3541 2.3441 26 6 3.5899 -3.6465 3.2999 27 1 -0.3633 -0.0895 1.0238 28 1 -0.3634 0.9313 -0.4344 29 1 -0.3634 -0.8419 -0.5894 30 1 1.8507 1.8885 0.8269 31 1 3.2635 1.0728 0.1149 32 1 1.9549 4.1631 -1.4659 33 1 3.1981 3.4977 -0.3694 34 1 3.7372 4.3013 -2.9658 35 1 4.6695 3.0261 -2.1230 36 1 2.3135 2.6928 -4.0619 37 1 3.8987 1.8518 -4.0808 38 1 1.8539 -0.1080 -3.8821 39 1 3.0936 -0.9839 2.2262 40 1 1.5882 -1.9335 2.2481 41 1 7.6058 -2.5968 0.5127 42 1 1.5601 -4.2653 2.5470 43 1 2.9477 -5.3059 1.9205 44 1 4.5435 -4.1328 3.5052 45 1 3.1560 -3.0921 4.1321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451336778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:40 Heat of formation + Delta-G solvation = -98.635383 kcal Electronic energy + Delta-G solvation = -27036.097218 eV Core-core repulsion = 23374.511204 eV Total energy + Delta-G solvation = -3661.586014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.05707 -37.11671 -36.16685 -35.76954 -34.91779 -34.68166 -32.14229 -30.00104 -28.47355 -27.53738 -26.34069 -25.49755 -23.47759 -21.77068 -20.80211 -19.58680 -19.37647 -18.25943 -17.49969 -16.79587 -16.47725 -15.81884 -15.45980 -15.10593 -14.71497 -14.54401 -14.21780 -13.92829 -13.79285 -13.56211 -13.06219 -12.89915 -12.67338 -12.48045 -12.34119 -12.20294 -11.97051 -11.58041 -11.32993 -11.28377 -11.07397 -11.04645 -10.96572 -10.87897 -10.69372 -10.57921 -10.50165 -10.37590 -10.11723 -10.05523 -9.66113 -9.54771 -9.14653 -8.71409 -8.62994 -8.38699 -6.15180 -4.25198 1.10690 3.22083 3.32263 3.34276 3.47440 4.32889 4.35826 4.57028 4.64050 4.66409 4.80776 4.99712 5.02239 5.07197 5.12930 5.27855 5.43736 5.49285 5.54824 5.59502 5.62684 5.66325 5.71822 5.76158 5.86741 5.88100 5.92705 6.00702 6.04217 6.05678 6.07391 6.16335 6.20578 6.29273 6.39921 6.40442 6.50477 6.60397 6.81850 6.98856 7.04536 7.59643 7.92944 8.35878 8.86889 9.46244 10.96410 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.005693 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.279044 B = 4917.246656 C = 5617.351492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.010 6.010 3 C 0.125 3.875 4 C -0.099 4.099 5 H 0.084 0.916 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.158 4.158 9 C 0.089 3.911 10 H 0.092 0.908 11 O -0.563 6.563 12 S 2.627 3.373 13 O -0.968 6.968 14 O -0.921 6.921 15 C -0.587 4.587 16 C 0.007 3.993 17 C -0.526 4.526 18 H 0.087 0.913 19 C 0.102 3.898 20 N -0.872 5.872 21 Si 0.873 3.127 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.257 1.257 25 C -0.177 4.177 26 C -0.189 4.189 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.376 0.624 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.267 0.733 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 12.286 -0.633 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.846 5.846 3 C -0.001 4.001 4 C -0.119 4.119 5 H 0.102 0.898 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.196 4.196 9 C 0.030 3.970 10 H 0.110 0.890 11 O -0.368 6.368 12 S 2.722 3.278 13 O -0.958 6.958 14 O -0.911 6.911 15 C -0.717 4.717 16 C 0.005 3.995 17 C -0.563 4.563 18 H 0.105 0.895 19 C -0.104 4.104 20 N -0.506 5.506 21 Si 0.700 3.300 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.181 1.181 25 C -0.214 4.214 26 C -0.227 4.227 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.223 0.777 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.600 12.148 -0.995 15.515 hybrid contribution 0.549 0.447 1.292 1.473 sum -9.051 12.595 0.297 15.513 Atomic orbital electron populations 1.21379 0.79548 1.03806 1.00631 1.57832 1.14772 1.21722 1.90236 1.21423 0.97347 0.84957 0.96381 1.22067 1.01228 0.94126 0.94484 0.89793 1.22109 0.98086 0.96063 0.99255 1.22254 0.99095 0.98743 0.96017 1.23201 1.00562 0.97441 0.98379 1.23026 0.90515 0.91822 0.91609 0.89045 1.86449 1.36874 1.63076 1.50374 1.04700 0.73446 0.72154 0.77514 1.93469 1.65082 1.62093 1.75201 1.93570 1.43639 1.82022 1.71845 1.30348 1.06989 1.08322 1.26013 1.18819 0.97513 0.87669 0.95525 1.20339 0.91811 1.41849 1.02337 0.89536 1.24872 0.95718 0.93534 0.96321 1.69877 1.01984 1.44399 1.34343 0.86976 0.78519 0.79726 0.84744 1.20270 1.21732 1.18150 1.22999 0.95662 0.98184 1.04522 1.22937 1.00855 1.05425 0.93482 0.93870 0.91252 0.90245 0.91477 0.88937 0.91584 0.91141 0.91705 0.91018 0.91122 0.91377 0.77744 0.86492 0.87856 0.92322 0.90550 0.88778 0.89081 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 10.46 59.85 0.63 1.86 16 2 N -1.01 -16.16 2.96 -121.75 -0.36 -16.52 16 3 C 0.12 1.74 4.72 -4.04 -0.02 1.72 16 4 C -0.10 -1.28 2.71 -89.50 -0.24 -1.53 16 5 H 0.08 1.07 6.84 -51.92 -0.35 0.72 16 6 C -0.12 -1.22 6.46 -25.61 -0.17 -1.39 16 7 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 8 C -0.16 -1.90 6.62 -24.74 -0.16 -2.07 16 9 C 0.09 1.32 3.52 -25.08 -0.09 1.24 16 10 H 0.09 1.64 5.81 -51.93 -0.30 1.34 16 11 O -0.56 -8.62 13.37 -35.23 -0.47 -9.09 16 12 S 2.63 54.96 4.81 -107.50 -0.52 54.45 16 13 O -0.97 -22.40 16.61 -57.54 -0.96 -23.36 16 14 O -0.92 -22.21 13.34 -57.54 -0.77 -22.98 16 15 C -0.59 -11.81 6.20 37.15 0.23 -11.58 16 16 C 0.01 0.17 1.12 -155.66 -0.17 0.00 16 17 C -0.53 -14.71 7.10 -34.44 -0.24 -14.95 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.10 2.90 5.47 -17.82 -0.10 2.81 16 20 N -0.87 -26.35 13.96 55.43 0.77 -25.57 16 21 Si 0.87 21.15 24.89 -169.99 -4.23 16.92 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.26 -5.75 5.53 56.52 0.31 -5.44 16 25 C -0.18 -3.66 9.88 -26.73 -0.26 -3.93 16 26 C -0.19 -3.98 7.24 -26.73 -0.19 -4.17 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.79 6.78 -51.93 -0.35 0.44 16 29 H 0.08 1.18 7.03 -51.93 -0.37 0.81 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.41 6.98 -51.93 -0.36 1.05 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.38 4.67 9.12 45.56 0.42 5.08 16 39 H 0.12 2.22 7.03 -51.93 -0.37 1.85 16 40 H 0.10 1.73 7.94 -51.92 -0.41 1.32 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 43 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 44 H 0.09 1.99 6.70 -51.93 -0.35 1.64 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -34.34 357.62 -8.82 -43.16 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.72 Total: 11.09 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: -0.97 Total: -33.49 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.41 Total: -42.09 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -2.19 Total: -55.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.23 Total: 16.92 kcal Atomic # 16 Polarization: 54.96 SS G_CDS: -0.52 Total: 54.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.34 -8.82 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451336778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.474 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds