Wall clock time and date at job start Tue Mar 31 2020 11:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00115 * 2 1 4 4 C 1.53001 * 109.46938 * 293.57574 * 3 2 1 5 5 H 1.09007 * 110.01674 * 56.49594 * 4 3 2 6 6 C 1.53873 * 110.03490 * 177.88776 * 4 3 2 7 7 C 1.54264 * 106.59934 * 119.28384 * 6 4 3 8 8 C 1.54888 * 104.19524 * 23.61090 * 7 6 4 9 9 C 1.54262 * 110.03512 * 295.05884 * 4 3 2 10 10 H 1.09002 * 110.48624 * 335.78216 * 9 4 3 11 11 O 1.42897 * 110.48957 * 98.42444 * 9 4 3 12 12 S 1.65605 * 119.99947 * 179.97438 * 2 1 3 13 13 O 1.42093 * 104.27796 * 24.80082 * 12 2 1 14 14 O 1.42095 * 104.27515 * 152.66264 * 12 2 1 15 15 C 1.81405 * 104.44795 * 268.73045 * 12 2 1 16 16 C 1.52993 * 109.46969 * 182.31475 * 15 12 2 17 17 C 1.50699 * 115.55237 * 39.56557 * 16 15 12 18 18 H 1.08002 * 119.99760 * 270.61870 * 17 16 15 19 19 C 1.37875 * 119.99875 * 90.61734 * 17 16 15 20 20 N 1.31516 * 119.99909 * 181.48037 * 19 17 16 21 21 Si 1.86798 * 120.00162 * 1.48074 * 19 17 16 22 22 H 1.48501 * 109.47079 * 92.94812 * 21 19 17 23 23 H 1.48496 * 109.47143 * 212.94540 * 21 19 17 24 24 H 1.48494 * 109.47178 * 332.94619 * 21 19 17 25 25 C 1.53004 * 117.49801 * 253.85566 * 16 15 12 26 26 C 1.52996 * 60.00236 * 252.51238 * 25 16 15 27 27 H 1.09000 * 109.47170 * 265.00412 * 1 2 3 28 28 H 1.09002 * 109.47194 * 25.00838 * 1 2 3 29 29 H 1.09005 * 109.47134 * 145.00310 * 1 2 3 30 30 H 1.09001 * 109.46872 * 53.57208 * 3 2 1 31 31 H 1.08993 * 109.47280 * 173.57980 * 3 2 1 32 32 H 1.08999 * 110.03124 * 238.57403 * 6 4 3 33 33 H 1.09004 * 110.02605 * 359.97438 * 6 4 3 34 34 H 1.09002 * 110.48598 * 142.29319 * 7 6 4 35 35 H 1.08994 * 110.48640 * 264.80307 * 7 6 4 36 36 H 1.09006 * 110.75524 * 80.37185 * 8 7 6 37 37 H 1.08997 * 110.75726 * 203.74159 * 8 7 6 38 38 H 0.96701 * 114.00166 * 180.02562 * 11 9 4 39 39 H 1.08997 * 109.47043 * 302.31937 * 15 12 2 40 40 H 1.09006 * 109.46864 * 62.31593 * 15 12 2 41 41 H 0.96998 * 120.00173 * 180.02562 * 20 19 17 42 42 H 1.08999 * 117.49922 * 0.02562 * 25 16 15 43 43 H 1.08998 * 117.49722 * 145.02165 * 25 16 15 44 44 H 1.09001 * 117.49893 * 252.51128 * 26 25 16 45 45 H 1.08997 * 117.49936 * 107.49171 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.9529 1.9988 -1.3221 5 1 0.8835 2.1444 -1.4757 6 6 2.6741 3.3581 -1.3150 7 6 3.6847 3.3268 -2.4802 8 6 3.1106 2.2667 -3.4526 9 6 2.5502 1.1891 -2.4914 10 1 3.3514 0.5408 -2.1365 11 8 1.5337 0.4213 -3.1388 12 16 2.2930 -1.4342 0.0006 13 8 1.3857 -2.3629 -0.5766 14 8 3.5276 -1.1263 -0.6319 15 6 2.5530 -1.8059 1.7571 16 6 3.3675 -3.0941 1.8905 17 6 4.4839 -3.2637 0.8925 18 1 4.2933 -3.7480 -0.0538 19 6 5.7485 -2.8005 1.1876 20 7 6.7159 -2.9223 0.3050 21 14 6.0879 -1.9999 2.8408 22 1 6.5785 -3.0256 3.7961 23 1 7.1182 -0.9431 2.6769 24 1 4.8368 -1.3946 3.3638 25 6 2.6273 -4.3541 2.3441 26 6 3.5899 -3.6465 3.2999 27 1 -0.3633 -0.0895 1.0238 28 1 -0.3634 0.9313 -0.4344 29 1 -0.3634 -0.8419 -0.5894 30 1 1.8507 1.8885 0.8269 31 1 3.2635 1.0728 0.1149 32 1 1.9549 4.1631 -1.4659 33 1 3.1981 3.4977 -0.3694 34 1 3.7372 4.3013 -2.9658 35 1 4.6695 3.0261 -2.1230 36 1 2.3135 2.6928 -4.0619 37 1 3.8987 1.8518 -4.0808 38 1 1.8539 -0.1080 -3.8821 39 1 3.0936 -0.9839 2.2262 40 1 1.5882 -1.9335 2.2481 41 1 7.6058 -2.5968 0.5127 42 1 1.5601 -4.2653 2.5470 43 1 2.9477 -5.3059 1.9205 44 1 4.5435 -4.1328 3.5052 45 1 3.1560 -3.0921 4.1321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451336778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:39 Heat of formation + Delta-G solvation = -125.922818 kcal Electronic energy + Delta-G solvation = -27037.280490 eV Core-core repulsion = 23374.511204 eV Total energy + Delta-G solvation = -3662.769286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.09991 -38.85567 -37.87846 -36.97981 -36.57032 -35.80258 -34.27597 -31.02881 -30.08999 -28.51147 -27.69503 -27.30448 -24.62449 -23.41639 -21.78270 -21.20169 -20.60737 -19.75666 -18.93188 -18.40012 -18.02139 -17.22645 -17.05758 -16.65786 -16.08244 -15.79769 -15.52423 -15.40393 -15.02967 -14.82997 -14.69109 -14.50022 -14.14164 -13.98535 -13.55203 -13.30178 -13.22364 -13.14736 -12.81676 -12.69815 -12.63018 -12.46390 -12.34650 -12.28051 -12.09399 -12.00468 -11.89011 -11.75631 -11.60445 -11.46946 -11.14720 -10.99403 -10.73702 -10.63303 -10.30980 -9.75018 -8.30832 -6.45800 -0.47133 1.33160 1.34416 1.47791 2.07543 2.34845 2.98997 3.05099 3.20430 3.30459 3.44792 3.58007 3.67963 3.81899 4.05119 4.10641 4.14288 4.33257 4.35050 4.43268 4.48761 4.51692 4.58239 4.60066 4.61122 4.73828 4.78911 4.81300 4.84946 4.91247 4.95730 5.00671 5.04759 5.13789 5.17830 5.21220 5.26256 5.40729 5.42527 5.49224 5.61734 5.81791 6.17100 6.64778 6.81083 7.29200 8.85857 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.005693 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.279044 B = 4917.246656 C = 5617.351492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.002 6.002 3 C 0.116 3.884 4 C -0.097 4.097 5 H 0.092 0.908 6 C -0.111 4.111 7 C -0.124 4.124 8 C -0.153 4.153 9 C 0.077 3.923 10 H 0.050 0.950 11 O -0.576 6.576 12 S 2.622 3.378 13 O -1.005 7.005 14 O -0.969 6.969 15 C -0.578 4.578 16 C -0.032 4.032 17 C -0.525 4.525 18 H 0.027 0.973 19 C 0.041 3.959 20 N -0.931 5.931 21 Si 0.929 3.071 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.217 1.217 25 C -0.171 4.171 26 C -0.173 4.173 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.382 0.618 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.267 0.733 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 15.150 2.747 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.840 5.840 3 C -0.009 4.009 4 C -0.117 4.117 5 H 0.110 0.890 6 C -0.149 4.149 7 C -0.162 4.162 8 C -0.191 4.191 9 C 0.018 3.982 10 H 0.068 0.932 11 O -0.382 6.382 12 S 2.719 3.281 13 O -0.995 6.995 14 O -0.959 6.959 15 C -0.710 4.710 16 C -0.035 4.035 17 C -0.563 4.563 18 H 0.045 0.955 19 C -0.160 4.160 20 N -0.568 5.568 21 Si 0.752 3.248 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.139 1.139 25 C -0.208 4.208 26 C -0.211 4.211 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.230 0.770 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.076 0.924 42 H 0.131 0.869 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.013 14.996 2.369 19.360 hybrid contribution 1.232 -0.535 0.101 1.347 sum -10.781 14.462 2.469 18.206 Atomic orbital electron populations 1.21630 0.77596 1.04170 1.02615 1.57397 1.15745 1.20666 1.90191 1.21726 0.96323 0.84368 0.98495 1.22125 1.01776 0.94909 0.92898 0.89015 1.22134 0.98250 0.95031 0.99521 1.22290 0.98575 0.99233 0.96082 1.23153 1.00670 0.97021 0.98255 1.23107 0.89723 0.91957 0.93392 0.93249 1.86408 1.37438 1.63546 1.50857 1.04406 0.72579 0.72819 0.78271 1.93411 1.65556 1.63987 1.76553 1.93524 1.45998 1.82866 1.73531 1.30180 1.08889 1.06901 1.24996 1.18788 0.97781 0.90518 0.96378 1.20386 0.93871 1.40607 1.01421 0.95523 1.25850 0.95286 0.94237 1.00628 1.70052 1.02683 1.46829 1.37246 0.86065 0.79955 0.79047 0.79741 1.18938 1.22073 1.13861 1.23115 0.97711 0.96433 1.03572 1.23041 1.00645 1.04452 0.92956 0.90539 0.88878 0.92445 0.87230 0.90960 0.89088 0.89982 0.89328 0.92307 0.89871 0.92078 0.77022 0.84770 0.83458 0.92355 0.86909 0.90210 0.90258 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.03 10.46 127.77 1.34 3.37 16 2 N -1.00 -30.40 2.96 -539.12 -1.59 -31.99 16 3 C 0.12 2.99 4.72 86.38 0.41 3.39 16 4 C -0.10 -2.34 2.71 -10.07 -0.03 -2.37 16 5 H 0.09 2.07 6.84 -2.38 -0.02 2.06 16 6 C -0.11 -2.00 6.46 31.32 0.20 -1.80 16 7 C -0.12 -2.49 6.83 31.67 0.22 -2.27 16 8 C -0.15 -3.67 6.62 31.88 0.21 -3.46 16 9 C 0.08 2.35 3.52 31.67 0.11 2.46 16 10 H 0.05 1.93 5.81 -2.39 -0.01 1.92 16 11 O -0.58 -18.30 13.37 -148.98 -1.99 -20.29 16 12 S 2.62 110.77 4.81 -56.49 -0.27 110.50 16 13 O -1.00 -47.92 16.61 -127.65 -2.12 -50.04 16 14 O -0.97 -49.65 13.34 -127.65 -1.70 -51.35 16 15 C -0.58 -21.56 6.20 71.98 0.45 -21.11 16 16 C -0.03 -1.46 1.12 -52.93 -0.06 -1.52 16 17 C -0.53 -30.55 7.10 25.60 0.18 -30.37 16 18 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 19 C 0.04 2.39 5.47 84.65 0.46 2.85 16 20 N -0.93 -59.62 13.96 21.45 0.30 -59.32 16 21 Si 0.93 42.76 24.89 68.60 1.71 44.47 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 24 H -0.22 -8.45 5.53 99.48 0.55 -7.91 16 25 C -0.17 -6.70 9.88 30.59 0.30 -6.40 16 26 C -0.17 -6.62 7.24 30.59 0.22 -6.40 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.80 6.78 -2.39 -0.02 1.78 16 29 H 0.06 1.64 7.03 -2.38 -0.02 1.63 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.18 6.98 -2.39 -0.02 2.16 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.30 7.67 -2.38 -0.02 1.29 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.38 10.37 9.12 -74.06 -0.68 9.70 16 39 H 0.13 4.52 7.03 -2.39 -0.02 4.50 16 40 H 0.15 4.15 7.94 -2.39 -0.02 4.13 16 41 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.11 3.58 8.08 -2.39 -0.02 3.56 16 43 H 0.08 3.29 8.14 -2.39 -0.02 3.28 16 44 H 0.08 3.23 6.70 -2.39 -0.02 3.22 16 45 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -81.81 357.62 -1.51 -83.32 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.15 Total: 38.33 kcal Atomic # 6 Polarization: -67.63 SS G_CDS: 4.01 Total: -63.62 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -1.30 Total: -91.31 kcal Atomic # 8 Polarization: -115.87 SS G_CDS: -5.81 Total: -121.69 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.71 Total: 44.47 kcal Atomic # 16 Polarization: 110.77 SS G_CDS: -0.27 Total: 110.50 kcal Total: -81.81 -1.51 -83.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451336778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.606 kcal (2) G-P(sol) polarization free energy of solvation -81.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds