Wall clock time and date at job start Tue Mar 31 2020 11:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 119.99969 * 2 1 4 4 C 1.53003 * 109.46857 * 274.40338 * 3 2 1 5 5 H 1.09003 * 110.01715 * 304.37404 * 4 3 2 6 6 C 1.54263 * 110.07385 * 182.95576 * 4 3 2 7 7 C 1.54895 * 104.19701 * 217.07901 * 6 4 3 8 8 C 1.54886 * 102.74533 * 37.94498 * 7 6 4 9 9 C 1.53875 * 110.03504 * 65.76417 * 4 3 2 10 10 H 1.09006 * 110.02852 * 0.04716 * 9 4 3 11 11 O 1.42904 * 110.03354 * 238.62139 * 9 4 3 12 12 S 1.65603 * 119.99898 * 179.97438 * 2 1 3 13 13 O 1.42095 * 104.27709 * 30.87973 * 12 2 1 14 14 O 1.42092 * 104.27522 * 158.73804 * 12 2 1 15 15 C 1.81400 * 104.44832 * 274.80681 * 12 2 1 16 16 C 1.52999 * 109.47157 * 172.10695 * 15 12 2 17 17 C 1.50709 * 115.54813 * 40.06089 * 16 15 12 18 18 H 1.07997 * 119.99600 * 264.81293 * 17 16 15 19 19 C 1.37878 * 119.99666 * 84.80990 * 17 16 15 20 20 N 1.31513 * 120.00061 * 1.89885 * 19 17 16 21 21 Si 1.86806 * 119.99707 * 181.90290 * 19 17 16 22 22 H 1.48499 * 109.46976 * 59.99924 * 21 19 17 23 23 H 1.48498 * 109.47093 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46752 * 299.99937 * 21 19 17 25 25 C 1.53004 * 117.50357 * 254.35436 * 16 15 12 26 26 C 1.53002 * 59.99983 * 252.50933 * 25 16 15 27 27 H 1.08998 * 109.47171 * 90.00582 * 1 2 3 28 28 H 1.09006 * 109.47072 * 210.00131 * 1 2 3 29 29 H 1.08996 * 109.47281 * 330.00128 * 1 2 3 30 30 H 1.08997 * 109.47496 * 154.40480 * 3 2 1 31 31 H 1.08997 * 109.47384 * 34.39510 * 3 2 1 32 32 H 1.08998 * 110.48846 * 335.75821 * 6 4 3 33 33 H 1.09005 * 110.48496 * 98.40146 * 6 4 3 34 34 H 1.08998 * 110.75822 * 279.63054 * 7 6 4 35 35 H 1.09001 * 110.75361 * 156.25410 * 7 6 4 36 36 H 1.09000 * 110.48919 * 203.38182 * 8 7 6 37 37 H 1.09001 * 110.49178 * 80.73373 * 8 7 6 38 38 H 0.96698 * 114.00121 * 179.97438 * 11 9 4 39 39 H 1.08992 * 109.47468 * 292.11027 * 15 12 2 40 40 H 1.09005 * 109.47061 * 52.11604 * 15 12 2 41 41 H 0.97008 * 119.99699 * 185.01463 * 20 19 17 42 42 H 1.08993 * 117.49697 * 359.97438 * 25 16 15 43 43 H 1.09002 * 117.49974 * 145.01857 * 25 16 15 44 44 H 1.09001 * 117.50036 * 252.51308 * 26 25 16 45 45 H 1.08998 * 117.50035 * 107.48502 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3566 1.7657 -1.4383 5 1 2.8399 1.0007 -2.0461 6 6 3.1903 3.0634 -1.4609 7 6 2.5340 3.9173 -2.5742 8 6 1.0257 3.6162 -2.3913 9 6 0.9803 2.1171 -2.0298 10 1 0.1990 1.9344 -1.2919 11 8 0.7381 1.3378 -3.2030 12 16 2.2931 -1.4342 0.0006 13 8 1.4447 -2.3289 -0.7057 14 8 3.5796 -1.0962 -0.4989 15 6 2.3919 -1.8990 1.7513 16 6 2.9664 -3.3118 1.8722 17 6 4.0969 -3.6366 0.9300 18 1 3.8931 -4.1344 -0.0065 19 6 5.3912 -3.2982 1.2637 20 7 5.6437 -2.7257 2.4204 21 14 6.7859 -3.6527 0.0726 22 1 6.5436 -2.9309 -1.2023 23 1 8.0696 -3.1970 0.6638 24 1 6.8532 -5.1127 -0.1902 25 6 1.9970 -4.4406 2.2289 26 6 3.0052 -3.9418 3.2660 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1818 1.1200 0.4439 31 1 1.6449 2.0073 0.5805 32 1 3.1265 3.5747 -0.5004 33 1 4.2289 2.8453 -1.7098 34 1 2.8752 3.5970 -3.5585 35 1 2.7379 4.9768 -2.4192 36 1 0.4844 3.8014 -3.3191 37 1 0.6122 4.2166 -1.5810 38 1 -0.1151 1.5135 -3.6227 39 1 3.0390 -1.1974 2.2776 40 1 1.3947 -1.8735 2.1908 41 1 6.5419 -2.4216 2.6252 42 1 0.9501 -4.1766 2.3778 43 1 2.1767 -5.4184 1.7819 44 1 3.8483 -4.5914 3.5013 45 1 2.6215 -3.3497 4.0968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451336781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:43 Heat of formation + Delta-G solvation = -105.517086 kcal Electronic energy + Delta-G solvation = -26629.956838 eV Core-core repulsion = 22968.072411 eV Total energy + Delta-G solvation = -3661.884428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.27091 -36.69488 -36.10013 -35.87220 -34.84016 -34.71164 -32.01514 -30.13151 -28.15904 -27.67927 -26.49767 -25.43983 -23.43230 -21.15101 -21.01470 -19.86502 -19.46005 -18.05187 -17.22723 -16.76042 -16.36199 -15.91563 -15.68619 -15.37500 -14.90563 -14.57992 -14.08304 -13.71228 -13.58691 -13.28278 -13.16781 -12.89215 -12.65352 -12.33549 -12.14954 -12.04537 -11.75907 -11.63198 -11.41395 -11.14954 -11.03371 -10.98869 -10.89191 -10.81541 -10.70165 -10.58429 -10.48385 -10.34705 -10.26560 -10.04674 -9.83545 -9.62770 -9.03631 -8.67999 -8.46697 -8.04178 -6.12866 -4.28722 1.19721 3.38224 3.39912 3.50944 3.53269 4.20154 4.44335 4.50673 4.53956 4.81883 4.90311 4.94329 5.00102 5.17829 5.22412 5.24221 5.30265 5.40406 5.52360 5.57847 5.59711 5.61110 5.72077 5.73530 5.82559 5.88492 5.91673 5.97511 5.98932 6.11699 6.14180 6.28077 6.35584 6.41076 6.50987 6.65333 6.73326 6.94877 7.01409 7.21924 7.46775 7.72207 7.80754 8.21679 8.80906 9.49026 10.94470 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.004913 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.057582 B = 5698.233122 C = 6528.869607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.016 6.016 3 C 0.134 3.866 4 C -0.108 4.108 5 H 0.096 0.904 6 C -0.118 4.118 7 C -0.121 4.121 8 C -0.158 4.158 9 C 0.101 3.899 10 H 0.062 0.938 11 O -0.559 6.559 12 S 2.624 3.376 13 O -0.969 6.969 14 O -0.940 6.940 15 C -0.563 4.563 16 C 0.047 3.953 17 C -0.540 4.540 18 H 0.068 0.932 19 C 0.097 3.903 20 N -0.869 5.869 21 Si 0.887 3.113 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.205 4.205 26 C -0.139 4.139 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.370 0.630 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.265 0.735 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 13.854 -3.432 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.851 5.851 3 C 0.008 3.992 4 C -0.129 4.129 5 H 0.114 0.886 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.196 4.196 9 C 0.042 3.958 10 H 0.080 0.920 11 O -0.363 6.363 12 S 2.721 3.279 13 O -0.959 6.959 14 O -0.930 6.930 15 C -0.695 4.695 16 C 0.045 3.955 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.110 4.110 20 N -0.503 5.503 21 Si 0.713 3.287 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.242 4.242 26 C -0.178 4.178 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.217 0.783 39 H 0.142 0.858 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.466 13.241 -3.907 16.739 hybrid contribution -0.001 0.352 0.149 0.382 sum -9.467 13.593 -3.757 16.986 Atomic orbital electron populations 1.21418 0.79874 1.01968 1.01770 1.58028 1.14499 1.22165 1.90449 1.21284 0.97215 0.85276 0.95414 1.22277 0.94406 0.98794 0.97382 0.88562 1.22376 0.99637 0.94700 0.98908 1.22437 0.94690 0.99278 0.99407 1.23126 0.97700 0.97253 1.01476 1.22619 0.97492 0.88736 0.86944 0.92003 1.86650 1.41368 1.65605 1.42714 1.04795 0.73264 0.71751 0.78086 1.93470 1.68212 1.63790 1.70436 1.93517 1.39823 1.81853 1.77785 1.30055 1.06426 1.09194 1.23836 1.18188 0.95296 0.84708 0.97294 1.20585 0.90306 1.42650 1.04230 0.91359 1.24894 0.98592 0.93173 0.94353 1.69981 1.21714 1.37897 1.20755 0.86692 0.80680 0.78916 0.82370 1.18759 1.20996 1.19962 1.23121 0.94126 1.00334 1.06665 1.22504 0.99553 1.03578 0.92171 0.92568 0.91561 0.91879 0.89183 0.90966 0.91211 0.90799 0.91267 0.91713 0.91407 0.91131 0.78344 0.85804 0.88710 0.92577 0.91388 0.89719 0.89393 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 8.47 59.85 0.51 1.74 16 2 N -1.02 -16.46 3.06 -121.76 -0.37 -16.83 16 3 C 0.13 1.89 4.56 -4.04 -0.02 1.87 16 4 C -0.11 -1.53 2.97 -89.50 -0.27 -1.80 16 5 H 0.10 1.73 7.91 -51.93 -0.41 1.32 16 6 C -0.12 -1.35 6.36 -25.07 -0.16 -1.51 16 7 C -0.12 -1.19 6.91 -24.74 -0.17 -1.36 16 8 C -0.16 -1.45 6.56 -25.07 -0.16 -1.62 16 9 C 0.10 1.19 3.25 -25.61 -0.08 1.11 16 10 H 0.06 0.66 5.25 -51.93 -0.27 0.39 16 11 O -0.56 -7.39 13.21 -35.23 -0.47 -7.85 16 12 S 2.62 57.25 4.45 -107.50 -0.48 56.77 16 13 O -0.97 -23.42 17.27 -57.54 -0.99 -24.42 16 14 O -0.94 -23.58 16.03 -57.54 -0.92 -24.50 16 15 C -0.56 -12.09 6.29 37.16 0.23 -11.86 16 16 C 0.05 1.18 1.70 -155.65 -0.27 0.91 16 17 C -0.54 -15.15 6.99 -34.44 -0.24 -15.39 16 18 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.10 2.71 5.43 -17.82 -0.10 2.61 16 20 N -0.87 -24.34 12.72 55.43 0.70 -23.64 16 21 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 22 H -0.26 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.21 -4.57 9.88 -26.73 -0.26 -4.84 16 26 C -0.14 -3.25 9.25 -26.73 -0.25 -3.49 16 27 H 0.06 0.72 7.35 -51.93 -0.38 0.34 16 28 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 29 H 0.06 0.59 7.71 -51.93 -0.40 0.19 16 30 H 0.09 1.35 7.49 -51.93 -0.39 0.96 16 31 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 32 H 0.07 0.67 7.86 -51.93 -0.41 0.27 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.37 3.10 9.11 45.56 0.41 3.52 16 39 H 0.12 2.66 8.14 -51.93 -0.42 2.24 16 40 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16 41 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 42 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 45 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -34.56 370.12 -10.06 -44.62 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.85 Total: 6.66 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: -1.24 Total: -33.62 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.33 Total: -40.47 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -2.38 Total: -56.77 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 57.25 SS G_CDS: -0.48 Total: 56.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.56 -10.06 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451336781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.897 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds