Wall clock time and date at job start Tue Mar 31 2020 11:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 119.99969 * 2 1 4 4 C 1.53003 * 109.46857 * 274.40338 * 3 2 1 5 5 H 1.09003 * 110.01715 * 304.37404 * 4 3 2 6 6 C 1.54263 * 110.07385 * 182.95576 * 4 3 2 7 7 C 1.54895 * 104.19701 * 217.07901 * 6 4 3 8 8 C 1.54886 * 102.74533 * 37.94498 * 7 6 4 9 9 C 1.53875 * 110.03504 * 65.76417 * 4 3 2 10 10 H 1.09006 * 110.02852 * 0.04716 * 9 4 3 11 11 O 1.42904 * 110.03354 * 238.62139 * 9 4 3 12 12 S 1.65603 * 119.99898 * 179.97438 * 2 1 3 13 13 O 1.42095 * 104.27709 * 30.87973 * 12 2 1 14 14 O 1.42092 * 104.27522 * 158.73804 * 12 2 1 15 15 C 1.81400 * 104.44832 * 274.80681 * 12 2 1 16 16 C 1.52999 * 109.47157 * 172.10695 * 15 12 2 17 17 C 1.50709 * 115.54813 * 40.06089 * 16 15 12 18 18 H 1.07997 * 119.99600 * 264.81293 * 17 16 15 19 19 C 1.37878 * 119.99666 * 84.80990 * 17 16 15 20 20 N 1.31513 * 120.00061 * 1.89885 * 19 17 16 21 21 Si 1.86806 * 119.99707 * 181.90290 * 19 17 16 22 22 H 1.48499 * 109.46976 * 59.99924 * 21 19 17 23 23 H 1.48498 * 109.47093 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46752 * 299.99937 * 21 19 17 25 25 C 1.53004 * 117.50357 * 254.35436 * 16 15 12 26 26 C 1.53002 * 59.99983 * 252.50933 * 25 16 15 27 27 H 1.08998 * 109.47171 * 90.00582 * 1 2 3 28 28 H 1.09006 * 109.47072 * 210.00131 * 1 2 3 29 29 H 1.08996 * 109.47281 * 330.00128 * 1 2 3 30 30 H 1.08997 * 109.47496 * 154.40480 * 3 2 1 31 31 H 1.08997 * 109.47384 * 34.39510 * 3 2 1 32 32 H 1.08998 * 110.48846 * 335.75821 * 6 4 3 33 33 H 1.09005 * 110.48496 * 98.40146 * 6 4 3 34 34 H 1.08998 * 110.75822 * 279.63054 * 7 6 4 35 35 H 1.09001 * 110.75361 * 156.25410 * 7 6 4 36 36 H 1.09000 * 110.48919 * 203.38182 * 8 7 6 37 37 H 1.09001 * 110.49178 * 80.73373 * 8 7 6 38 38 H 0.96698 * 114.00121 * 179.97438 * 11 9 4 39 39 H 1.08992 * 109.47468 * 292.11027 * 15 12 2 40 40 H 1.09005 * 109.47061 * 52.11604 * 15 12 2 41 41 H 0.97008 * 119.99699 * 185.01463 * 20 19 17 42 42 H 1.08993 * 117.49697 * 359.97438 * 25 16 15 43 43 H 1.09002 * 117.49974 * 145.01857 * 25 16 15 44 44 H 1.09001 * 117.50036 * 252.51308 * 26 25 16 45 45 H 1.08998 * 117.50035 * 107.48502 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3566 1.7657 -1.4383 5 1 2.8399 1.0007 -2.0461 6 6 3.1903 3.0634 -1.4609 7 6 2.5340 3.9173 -2.5742 8 6 1.0257 3.6162 -2.3913 9 6 0.9803 2.1171 -2.0298 10 1 0.1990 1.9344 -1.2919 11 8 0.7381 1.3378 -3.2030 12 16 2.2931 -1.4342 0.0006 13 8 1.4447 -2.3289 -0.7057 14 8 3.5796 -1.0962 -0.4989 15 6 2.3919 -1.8990 1.7513 16 6 2.9664 -3.3118 1.8722 17 6 4.0969 -3.6366 0.9300 18 1 3.8931 -4.1344 -0.0065 19 6 5.3912 -3.2982 1.2637 20 7 5.6437 -2.7257 2.4204 21 14 6.7859 -3.6527 0.0726 22 1 6.5436 -2.9309 -1.2023 23 1 8.0696 -3.1970 0.6638 24 1 6.8532 -5.1127 -0.1902 25 6 1.9970 -4.4406 2.2289 26 6 3.0052 -3.9418 3.2660 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1818 1.1200 0.4439 31 1 1.6449 2.0073 0.5805 32 1 3.1265 3.5747 -0.5004 33 1 4.2289 2.8453 -1.7098 34 1 2.8752 3.5970 -3.5585 35 1 2.7379 4.9768 -2.4192 36 1 0.4844 3.8014 -3.3191 37 1 0.6122 4.2166 -1.5810 38 1 -0.1151 1.5135 -3.6227 39 1 3.0390 -1.1974 2.2776 40 1 1.3947 -1.8735 2.1908 41 1 6.5419 -2.4216 2.6252 42 1 0.9501 -4.1766 2.3778 43 1 2.1767 -5.4184 1.7819 44 1 3.8483 -4.5914 3.5013 45 1 2.6215 -3.3497 4.0968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451336781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:42 Heat of formation + Delta-G solvation = -131.554840 kcal Electronic energy + Delta-G solvation = -26631.085920 eV Core-core repulsion = 22968.072411 eV Total energy + Delta-G solvation = -3663.013509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.20971 -38.55125 -37.89403 -37.04024 -36.57608 -35.71126 -34.12182 -31.10794 -29.88548 -28.54716 -27.65749 -27.39386 -24.57379 -22.95562 -21.84635 -21.37511 -20.84347 -19.65102 -18.43727 -18.35229 -17.91555 -17.22544 -17.00542 -16.62220 -16.42310 -16.31293 -15.60840 -15.42215 -14.95495 -14.57653 -14.28584 -14.03683 -13.93556 -13.73324 -13.59934 -13.42497 -13.14065 -13.05811 -12.93573 -12.79989 -12.65304 -12.58813 -12.45081 -12.41126 -12.09644 -11.93381 -11.91366 -11.82959 -11.55085 -11.45799 -11.28004 -10.99105 -10.69180 -10.49770 -10.09540 -9.73782 -8.26066 -6.44145 -0.46038 1.31870 1.36639 1.45327 2.08019 2.37327 3.04564 3.15503 3.29976 3.34738 3.50553 3.66279 3.69983 3.81123 4.06687 4.09795 4.26312 4.35254 4.40292 4.48487 4.55216 4.57586 4.58441 4.67041 4.71672 4.76357 4.83664 4.85707 4.96353 4.97561 4.99269 5.03828 5.07699 5.17993 5.19560 5.24117 5.37661 5.39245 5.49642 5.62439 5.65130 5.79095 6.18396 6.65460 7.01512 7.33855 8.80827 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.004913 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.057582 B = 5698.233122 C = 6528.869607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.007 6.007 3 C 0.127 3.873 4 C -0.117 4.117 5 H 0.041 0.959 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.147 4.147 9 C 0.097 3.903 10 H 0.080 0.920 11 O -0.590 6.590 12 S 2.627 3.373 13 O -1.003 7.003 14 O -0.988 6.988 15 C -0.555 4.555 16 C 0.008 3.992 17 C -0.556 4.556 18 H 0.044 0.956 19 C 0.062 3.938 20 N -0.883 5.883 21 Si 0.919 3.081 22 H -0.282 1.282 23 H -0.267 1.267 24 H -0.264 1.264 25 C -0.191 4.191 26 C -0.134 4.134 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.389 0.611 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.267 0.733 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 16.135 -2.122 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.845 5.845 3 C 0.002 3.998 4 C -0.138 4.138 5 H 0.059 0.941 6 C -0.157 4.157 7 C -0.158 4.158 8 C -0.185 4.185 9 C 0.039 3.961 10 H 0.098 0.902 11 O -0.398 6.398 12 S 2.725 3.275 13 O -0.993 6.993 14 O -0.978 6.978 15 C -0.687 4.687 16 C 0.006 3.994 17 C -0.593 4.593 18 H 0.062 0.938 19 C -0.143 4.143 20 N -0.518 5.518 21 Si 0.744 3.256 22 H -0.208 1.208 23 H -0.191 1.191 24 H -0.189 1.189 25 C -0.228 4.228 26 C -0.173 4.173 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.238 0.762 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.781 15.505 -2.607 19.647 hybrid contribution 0.664 -0.356 -0.297 0.810 sum -11.117 15.149 -2.903 19.013 Atomic orbital electron populations 1.21790 0.77343 1.04539 1.02548 1.57537 1.15924 1.20890 1.90194 1.21574 0.97077 0.85101 0.96053 1.22315 0.96220 0.98486 0.96742 0.94070 1.22409 0.98326 0.93995 1.00922 1.22449 0.95351 1.00173 0.97791 1.23092 0.97032 0.95326 1.03038 1.22722 0.96205 0.90261 0.86904 0.90187 1.86609 1.43082 1.66573 1.43584 1.04297 0.72414 0.72518 0.78229 1.93413 1.68556 1.65765 1.71550 1.93452 1.42604 1.82778 1.78952 1.29894 1.08434 1.06904 1.23473 1.18353 0.96030 0.87210 0.97775 1.20718 0.91979 1.42503 1.04109 0.93807 1.25369 1.00025 0.93447 0.95499 1.69997 1.22108 1.38488 1.21215 0.86204 0.79840 0.79160 0.80399 1.20750 1.19094 1.18882 1.23207 0.95503 0.99139 1.04957 1.22433 0.99325 1.03258 0.92295 0.92825 0.91191 0.87108 0.91032 0.85996 0.88643 0.92687 0.93063 0.89369 0.90241 0.88505 0.76152 0.86046 0.84596 0.92348 0.87934 0.90405 0.91712 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.86 8.47 127.77 1.08 2.94 16 2 N -1.01 -31.21 3.06 -539.12 -1.65 -32.85 16 3 C 0.13 3.38 4.56 86.38 0.39 3.77 16 4 C -0.12 -3.28 2.97 -10.07 -0.03 -3.31 16 5 H 0.04 1.59 7.91 -2.39 -0.02 1.57 16 6 C -0.12 -2.59 6.36 31.67 0.20 -2.39 16 7 C -0.12 -2.14 6.91 31.89 0.22 -1.92 16 8 C -0.15 -2.21 6.56 31.67 0.21 -2.00 16 9 C 0.10 2.09 3.25 31.32 0.10 2.19 16 10 H 0.08 1.40 5.25 -2.38 -0.01 1.38 16 11 O -0.59 -15.32 13.21 -148.98 -1.97 -17.28 16 12 S 2.63 116.02 4.45 -56.49 -0.25 115.77 16 13 O -1.00 -49.35 17.27 -127.65 -2.20 -51.56 16 14 O -0.99 -52.12 16.03 -127.65 -2.05 -54.17 16 15 C -0.55 -23.14 6.29 71.98 0.45 -22.69 16 16 C 0.01 0.41 1.70 -52.92 -0.09 0.32 16 17 C -0.56 -31.98 6.99 25.60 0.18 -31.80 16 18 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 19 C 0.06 3.52 5.43 84.66 0.46 3.98 16 20 N -0.88 -49.96 12.72 21.45 0.27 -49.69 16 21 Si 0.92 46.46 29.54 68.60 2.03 48.49 16 22 H -0.28 -15.00 7.11 99.48 0.71 -14.29 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 25 C -0.19 -8.22 9.88 30.60 0.30 -7.92 16 26 C -0.13 -6.10 9.25 30.60 0.28 -5.82 16 27 H 0.05 1.25 7.35 -2.39 -0.02 1.24 16 28 H 0.07 1.54 7.92 -2.38 -0.02 1.53 16 29 H 0.11 1.47 7.71 -2.39 -0.02 1.45 16 30 H 0.07 2.16 7.49 -2.39 -0.02 2.14 16 31 H 0.12 2.03 7.95 -2.39 -0.02 2.01 16 32 H 0.10 1.58 7.86 -2.39 -0.02 1.56 16 33 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.39 6.04 9.11 -74.06 -0.67 5.36 16 39 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 40 H 0.14 4.41 7.95 -2.39 -0.02 4.39 16 41 H 0.27 14.39 8.32 -92.70 -0.77 13.62 16 42 H 0.10 3.67 8.08 -2.39 -0.02 3.65 16 43 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -79.16 370.12 -1.76 -80.92 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.30 Total: 25.01 kcal Atomic # 6 Polarization: -68.40 SS G_CDS: 3.76 Total: -64.64 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.38 Total: -82.54 kcal Atomic # 8 Polarization: -116.79 SS G_CDS: -6.22 Total: -123.01 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 16 Polarization: 116.02 SS G_CDS: -0.25 Total: 115.77 kcal Total: -79.16 -1.76 -80.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451336781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.638 kcal (2) G-P(sol) polarization free energy of solvation -79.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds