Wall clock time and date at job start Tue Mar 31 2020 11:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00182 * 2 1 4 4 H 1.09002 * 110.01780 * 330.06812 * 3 2 1 5 5 C 1.54271 * 110.03151 * 91.45216 * 3 2 1 6 6 C 1.54892 * 104.31112 * 142.82889 * 5 3 2 7 7 C 1.55028 * 102.68642 * 322.23073 * 6 5 3 8 8 C 1.53877 * 110.03613 * 208.62233 * 3 2 1 9 9 H 1.08999 * 110.03513 * 121.38326 * 8 3 2 10 10 C 1.53002 * 110.02784 * 359.97438 * 8 3 2 11 11 N 1.46501 * 109.46814 * 175.00087 * 10 8 3 12 12 S 1.65594 * 119.99936 * 165.00089 * 11 10 8 13 13 O 1.42103 * 104.27795 * 181.07335 * 12 11 10 14 14 O 1.42099 * 104.27655 * 308.92668 * 12 11 10 15 15 C 1.81397 * 104.44952 * 65.00072 * 12 11 10 16 16 C 1.53002 * 109.47134 * 173.81373 * 15 12 11 17 17 C 1.50703 * 115.55324 * 65.19250 * 16 15 12 18 18 H 1.08004 * 119.99752 * 264.78596 * 17 16 15 19 19 C 1.37868 * 119.99786 * 84.78234 * 17 16 15 20 20 N 1.31516 * 120.00555 * 352.24007 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 172.23559 * 19 17 16 22 22 H 1.48498 * 109.47145 * 90.00000 * 21 19 17 23 23 H 1.48504 * 109.47130 * 210.00486 * 21 19 17 24 24 H 1.48506 * 109.46848 * 330.00065 * 21 19 17 25 25 C 1.53007 * 117.49691 * 279.52586 * 16 15 12 26 26 C 1.53001 * 117.49831 * 210.86560 * 16 15 12 27 27 H 1.08996 * 109.47197 * 299.99812 * 1 2 3 28 28 H 1.09002 * 109.47328 * 59.99723 * 1 2 3 29 29 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.09001 * 110.48606 * 261.57170 * 5 3 2 31 31 H 1.08998 * 110.48224 * 24.08754 * 5 3 2 32 32 H 1.09003 * 110.75469 * 80.44451 * 6 5 3 33 33 H 1.08999 * 110.75447 * 203.80741 * 6 5 3 34 34 H 1.09002 * 110.36191 * 279.09985 * 7 6 5 35 35 H 1.08994 * 110.52785 * 156.51457 * 7 6 5 36 36 H 1.09002 * 109.47083 * 294.99844 * 10 8 3 37 37 H 1.08996 * 109.47001 * 55.00497 * 10 8 3 38 38 H 0.97005 * 120.00244 * 345.00733 * 11 10 8 39 39 H 1.08995 * 109.46936 * 293.81232 * 15 12 11 40 40 H 1.08998 * 109.47425 * 53.81369 * 15 12 11 41 41 H 0.96993 * 120.00615 * 185.03387 * 20 19 17 42 42 H 1.09001 * 117.49568 * 359.97438 * 25 16 15 43 43 H 1.09002 * 117.49763 * 145.02376 * 25 16 15 44 44 H 1.09000 * 117.50143 * 214.97496 * 26 16 15 45 45 H 1.09004 * 117.49811 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3512 2.0073 -0.5110 5 6 2.2587 1.7732 1.4489 6 6 3.5961 2.5512 1.3760 7 6 4.4193 1.7188 0.3598 8 6 3.3839 1.2708 -0.6925 9 1 3.3920 1.9557 -1.5404 10 6 3.6976 -0.1507 -1.1637 11 7 4.9496 -0.1478 -1.9244 12 16 5.7301 -1.5738 -2.2398 13 8 6.8927 -1.1855 -2.9587 14 8 5.8304 -2.2064 -0.9713 15 6 4.5902 -2.4850 -3.3172 16 6 5.2666 -3.7668 -3.8075 17 6 5.5828 -4.7838 -2.7413 18 1 6.5646 -4.8073 -2.2916 19 6 4.6189 -5.6840 -2.3399 20 7 3.3831 -5.5609 -2.7725 21 14 5.0682 -7.0790 -1.1815 22 1 4.8842 -6.6345 0.2234 23 1 4.1917 -8.2472 -1.4500 24 1 6.4862 -7.4641 -1.3971 25 6 6.2416 -3.6467 -4.9806 26 6 4.8690 -4.2915 -5.1886 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.4538 2.4286 1.7816 31 1 2.3519 0.9160 2.1158 32 1 3.4346 3.5630 1.0041 33 1 4.0856 2.5700 2.3497 34 1 4.8637 0.8528 0.8505 35 1 5.1910 2.3343 -0.1023 36 1 3.7995 -0.8060 -0.2987 37 1 2.8877 -0.5100 -1.7985 38 1 5.3216 0.6895 -2.2432 39 1 3.6891 -2.7402 -2.7596 40 1 4.3244 -1.8642 -4.1728 41 1 2.6898 -6.1488 -2.4340 42 1 6.4008 -2.6546 -5.4032 43 1 7.1115 -4.3036 -4.9813 44 1 4.8364 -5.3723 -5.3262 45 1 4.1251 -3.7238 -5.7477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451369129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:14 Heat of formation + Delta-G solvation = -107.902500 kcal Electronic energy + Delta-G solvation = -26016.001912 eV Core-core repulsion = 22354.014045 eV Total energy + Delta-G solvation = -3661.987867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.50567 -36.69676 -36.39639 -36.10024 -34.98689 -34.34438 -31.98667 -29.43591 -28.32911 -28.06612 -26.18992 -25.39527 -24.13045 -21.16682 -20.98549 -20.02206 -19.54190 -18.54393 -17.12660 -16.91825 -16.31598 -15.76184 -15.48788 -15.06285 -15.00285 -14.65417 -14.60569 -14.20508 -14.10914 -13.73882 -13.49885 -13.06749 -12.59320 -12.28869 -11.87270 -11.77284 -11.75099 -11.52855 -11.26914 -11.21331 -11.18591 -11.06007 -10.95692 -10.89663 -10.85578 -10.74466 -10.52024 -10.46441 -10.39193 -10.05387 -9.67876 -9.63915 -9.01783 -8.89765 -8.50678 -8.02776 -6.08355 -4.18477 1.19609 3.34886 3.40529 3.45414 3.56341 3.69166 4.38441 4.42055 4.42468 4.60539 4.75146 5.03030 5.08730 5.14071 5.19867 5.23157 5.24798 5.27688 5.32346 5.41764 5.43529 5.49402 5.63486 5.69608 5.75250 5.81423 5.88151 6.00056 6.03598 6.07627 6.13468 6.26721 6.31759 6.41425 6.46085 6.67585 6.76665 7.03465 7.13315 7.30039 7.42166 7.43745 7.85986 8.26231 8.86533 9.52354 10.99400 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.004487 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.234021 B = 6238.094507 C = 7007.189316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.089 3.911 4 H 0.065 0.935 5 C -0.148 4.148 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.095 4.095 9 H 0.084 0.916 10 C 0.134 3.866 11 N -1.135 6.135 12 S 2.609 3.391 13 O -0.978 6.978 14 O -0.950 6.950 15 C -0.554 4.554 16 C 0.044 3.956 17 C -0.515 4.515 18 H 0.068 0.932 19 C 0.083 3.917 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.209 4.209 26 C -0.142 4.142 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.406 0.594 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 16.438 4.251 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.030 3.970 4 H 0.083 0.917 5 C -0.186 4.186 6 C -0.161 4.161 7 C -0.159 4.159 8 C -0.115 4.115 9 H 0.102 0.898 10 C 0.008 3.992 11 N -0.892 5.892 12 S 2.706 3.294 13 O -0.969 6.969 14 O -0.940 6.940 15 C -0.687 4.687 16 C 0.042 3.958 17 C -0.552 4.552 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.510 5.510 21 Si 0.717 3.283 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.246 4.246 26 C -0.181 4.181 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.152 0.848 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.627 15.737 4.653 17.349 hybrid contribution -0.817 -0.117 0.090 0.830 sum -6.444 15.621 4.743 17.551 Atomic orbital electron populations 1.22791 0.81306 1.03047 0.99506 1.88037 1.19397 1.26987 1.94847 1.22811 0.94049 0.84831 0.95302 0.91708 1.22917 0.97738 1.00564 0.97349 1.22444 0.95514 0.98425 0.99672 1.22502 0.97161 1.00279 0.95964 1.22089 0.93622 0.97508 0.98252 0.89809 1.21069 0.84912 0.96851 0.96359 1.55993 1.37680 1.25150 1.70391 1.05026 0.75269 0.73021 0.76063 1.93494 1.46105 1.81691 1.75598 1.93530 1.85644 1.75186 1.39645 1.29973 1.15942 1.09408 1.13406 1.18286 0.97000 0.91535 0.89028 1.20510 0.99272 1.14509 1.20912 0.91398 1.24937 0.94815 0.97164 0.95310 1.69976 1.00415 1.38551 1.42047 0.86595 0.78770 0.81475 0.81425 1.20024 1.21123 1.19459 1.23195 0.94312 1.00768 1.06311 1.22548 0.95143 0.99630 1.00793 0.94354 0.94164 0.89394 0.91744 0.90141 0.91584 0.91211 0.90356 0.91277 0.89624 0.91382 0.76196 0.84799 0.88418 0.92783 0.90724 0.89564 0.89627 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.38 16 2 O -0.37 -4.69 8.46 -35.23 -0.30 -4.99 16 3 C 0.09 0.92 3.35 -25.61 -0.09 0.83 16 4 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 5 C -0.15 -1.37 6.55 -25.07 -0.16 -1.53 16 6 C -0.12 -1.06 6.92 -24.66 -0.17 -1.23 16 7 C -0.12 -1.29 6.19 -25.00 -0.15 -1.44 16 8 C -0.09 -1.05 2.97 -89.50 -0.27 -1.31 16 9 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 10 C 0.13 1.95 4.47 -4.04 -0.02 1.93 16 11 N -1.14 -17.45 5.70 -10.61 -0.06 -17.51 16 12 S 2.61 54.18 5.19 -107.50 -0.56 53.63 16 13 O -0.98 -21.94 18.08 -57.54 -1.04 -22.99 16 14 O -0.95 -23.31 17.17 -57.54 -0.99 -24.29 16 15 C -0.55 -11.97 5.93 37.16 0.22 -11.75 16 16 C 0.04 1.09 1.32 -155.65 -0.21 0.89 16 17 C -0.51 -14.36 8.18 -34.44 -0.28 -14.64 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C 0.08 2.29 5.38 -17.82 -0.10 2.20 16 20 N -0.87 -24.40 12.98 55.43 0.72 -23.68 16 21 Si 0.89 21.73 29.55 -169.99 -5.02 16.71 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.21 -4.69 9.96 -26.69 -0.27 -4.95 16 26 C -0.14 -3.30 9.49 -26.69 -0.25 -3.55 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.33 8.10 -51.93 -0.42 -0.09 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.84 8.08 -51.93 -0.42 0.43 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.44 7.46 -51.93 -0.39 1.05 16 37 H 0.07 0.98 7.65 -51.93 -0.40 0.58 16 38 H 0.41 5.15 8.62 -34.47 -0.30 4.85 16 39 H 0.13 3.03 8.14 -51.93 -0.42 2.60 16 40 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 41 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 44 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -33.39 377.43 -9.97 -43.36 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.77 Total: 7.25 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: -0.64 Total: -33.18 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.66 Total: -41.19 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -2.33 Total: -52.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 54.18 SS G_CDS: -0.56 Total: 53.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.39 -9.97 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451369129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.540 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds