Wall clock time and date at job start Tue Mar 31 2020 11:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00182 * 2 1 4 4 H 1.09002 * 110.01780 * 330.06812 * 3 2 1 5 5 C 1.54271 * 110.03151 * 91.45216 * 3 2 1 6 6 C 1.54892 * 104.31112 * 142.82889 * 5 3 2 7 7 C 1.55028 * 102.68642 * 322.23073 * 6 5 3 8 8 C 1.53877 * 110.03613 * 208.62233 * 3 2 1 9 9 H 1.08999 * 110.03513 * 121.38326 * 8 3 2 10 10 C 1.53002 * 110.02784 * 359.97438 * 8 3 2 11 11 N 1.46501 * 109.46814 * 175.00087 * 10 8 3 12 12 S 1.65594 * 119.99936 * 165.00089 * 11 10 8 13 13 O 1.42103 * 104.27795 * 181.07335 * 12 11 10 14 14 O 1.42099 * 104.27655 * 308.92668 * 12 11 10 15 15 C 1.81397 * 104.44952 * 65.00072 * 12 11 10 16 16 C 1.53002 * 109.47134 * 173.81373 * 15 12 11 17 17 C 1.50703 * 115.55324 * 65.19250 * 16 15 12 18 18 H 1.08004 * 119.99752 * 264.78596 * 17 16 15 19 19 C 1.37868 * 119.99786 * 84.78234 * 17 16 15 20 20 N 1.31516 * 120.00555 * 352.24007 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 172.23559 * 19 17 16 22 22 H 1.48498 * 109.47145 * 90.00000 * 21 19 17 23 23 H 1.48504 * 109.47130 * 210.00486 * 21 19 17 24 24 H 1.48506 * 109.46848 * 330.00065 * 21 19 17 25 25 C 1.53007 * 117.49691 * 279.52586 * 16 15 12 26 26 C 1.53001 * 117.49831 * 210.86560 * 16 15 12 27 27 H 1.08996 * 109.47197 * 299.99812 * 1 2 3 28 28 H 1.09002 * 109.47328 * 59.99723 * 1 2 3 29 29 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.09001 * 110.48606 * 261.57170 * 5 3 2 31 31 H 1.08998 * 110.48224 * 24.08754 * 5 3 2 32 32 H 1.09003 * 110.75469 * 80.44451 * 6 5 3 33 33 H 1.08999 * 110.75447 * 203.80741 * 6 5 3 34 34 H 1.09002 * 110.36191 * 279.09985 * 7 6 5 35 35 H 1.08994 * 110.52785 * 156.51457 * 7 6 5 36 36 H 1.09002 * 109.47083 * 294.99844 * 10 8 3 37 37 H 1.08996 * 109.47001 * 55.00497 * 10 8 3 38 38 H 0.97005 * 120.00244 * 345.00733 * 11 10 8 39 39 H 1.08995 * 109.46936 * 293.81232 * 15 12 11 40 40 H 1.08998 * 109.47425 * 53.81369 * 15 12 11 41 41 H 0.96993 * 120.00615 * 185.03387 * 20 19 17 42 42 H 1.09001 * 117.49568 * 359.97438 * 25 16 15 43 43 H 1.09002 * 117.49763 * 145.02376 * 25 16 15 44 44 H 1.09000 * 117.50143 * 214.97496 * 26 16 15 45 45 H 1.09004 * 117.49811 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3512 2.0073 -0.5110 5 6 2.2587 1.7732 1.4489 6 6 3.5961 2.5512 1.3760 7 6 4.4193 1.7188 0.3598 8 6 3.3839 1.2708 -0.6925 9 1 3.3920 1.9557 -1.5404 10 6 3.6976 -0.1507 -1.1637 11 7 4.9496 -0.1478 -1.9244 12 16 5.7301 -1.5738 -2.2398 13 8 6.8927 -1.1855 -2.9587 14 8 5.8304 -2.2064 -0.9713 15 6 4.5902 -2.4850 -3.3172 16 6 5.2666 -3.7668 -3.8075 17 6 5.5828 -4.7838 -2.7413 18 1 6.5646 -4.8073 -2.2916 19 6 4.6189 -5.6840 -2.3399 20 7 3.3831 -5.5609 -2.7725 21 14 5.0682 -7.0790 -1.1815 22 1 4.8842 -6.6345 0.2234 23 1 4.1917 -8.2472 -1.4500 24 1 6.4862 -7.4641 -1.3971 25 6 6.2416 -3.6467 -4.9806 26 6 4.8690 -4.2915 -5.1886 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.4538 2.4286 1.7816 31 1 2.3519 0.9160 2.1158 32 1 3.4346 3.5630 1.0041 33 1 4.0856 2.5700 2.3497 34 1 4.8637 0.8528 0.8505 35 1 5.1910 2.3343 -0.1023 36 1 3.7995 -0.8060 -0.2987 37 1 2.8877 -0.5100 -1.7985 38 1 5.3216 0.6895 -2.2432 39 1 3.6891 -2.7402 -2.7596 40 1 4.3244 -1.8642 -4.1728 41 1 2.6898 -6.1488 -2.4340 42 1 6.4008 -2.6546 -5.4032 43 1 7.1115 -4.3036 -4.9813 44 1 4.8364 -5.3723 -5.3262 45 1 4.1251 -3.7238 -5.7477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451369129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:13 Heat of formation + Delta-G solvation = -131.220632 kcal Electronic energy + Delta-G solvation = -26017.013062 eV Core-core repulsion = 22354.014045 eV Total energy + Delta-G solvation = -3662.999017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.33879 -38.55683 -37.92373 -37.26987 -36.75533 -35.48388 -34.07870 -30.39789 -29.83480 -29.07621 -27.48294 -26.96097 -25.19424 -22.98773 -21.74733 -21.52249 -20.82252 -20.14234 -18.44309 -18.38468 -17.93388 -16.86912 -16.78126 -16.71153 -16.52609 -16.02962 -15.70476 -15.51930 -15.25912 -15.11963 -14.88955 -14.43507 -13.76889 -13.65991 -13.50707 -13.37211 -13.11936 -12.88888 -12.86817 -12.86524 -12.83990 -12.42465 -12.28962 -12.21227 -12.14197 -11.92125 -11.90142 -11.86168 -11.56047 -11.50071 -11.33588 -10.86743 -10.54747 -10.49948 -10.33875 -9.84187 -8.18735 -6.33069 -0.46936 1.37483 1.40631 1.48726 2.07766 2.39907 2.90391 2.97452 3.08644 3.38915 3.47737 3.60251 3.64963 3.87999 3.99369 4.27678 4.31374 4.36192 4.41761 4.47925 4.52453 4.54013 4.58916 4.60491 4.61888 4.74290 4.82346 4.85169 4.90721 4.98132 4.99105 5.05041 5.07377 5.21301 5.21907 5.28380 5.30485 5.48425 5.50293 5.59332 5.72273 6.22646 6.24465 6.41005 6.72639 7.38924 8.88391 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.004487 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.234021 B = 6238.094507 C = 7007.189316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.147 4.147 6 C -0.116 4.116 7 C -0.127 4.127 8 C -0.092 4.092 9 H 0.111 0.889 10 C 0.132 3.868 11 N -1.113 6.113 12 S 2.625 3.375 13 O -0.996 6.996 14 O -0.996 6.996 15 C -0.551 4.551 16 C 0.008 3.992 17 C -0.534 4.534 18 H 0.048 0.952 19 C 0.043 3.957 20 N -0.892 5.892 21 Si 0.934 3.066 22 H -0.279 1.279 23 H -0.272 1.272 24 H -0.268 1.268 25 C -0.195 4.195 26 C -0.138 4.138 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.422 0.578 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.265 0.735 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 18.749 3.658 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.026 3.974 4 H 0.109 0.891 5 C -0.185 4.185 6 C -0.153 4.153 7 C -0.165 4.165 8 C -0.112 4.112 9 H 0.129 0.871 10 C 0.006 3.994 11 N -0.875 5.875 12 S 2.722 3.278 13 O -0.986 6.986 14 O -0.986 6.986 15 C -0.684 4.684 16 C 0.006 3.994 17 C -0.572 4.572 18 H 0.066 0.934 19 C -0.160 4.160 20 N -0.528 5.528 21 Si 0.759 3.241 22 H -0.205 1.205 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.233 4.233 26 C -0.177 4.177 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.258 0.742 39 H 0.138 0.862 40 H 0.151 0.849 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.522 18.050 4.048 19.614 hybrid contribution -0.538 -0.802 0.276 1.005 sum -7.060 17.248 4.324 19.132 Atomic orbital electron populations 1.22915 0.80047 1.03165 1.00974 1.88002 1.21018 1.28596 1.95087 1.22994 0.93778 0.84572 0.96011 0.89130 1.22914 0.98894 1.00248 0.96438 1.22438 0.94567 0.99023 0.99277 1.22534 0.97736 0.99764 0.96479 1.22174 0.94402 0.95318 0.99324 0.87062 1.21143 0.84051 0.99074 0.95134 1.55425 1.37859 1.24101 1.70099 1.04245 0.75021 0.73507 0.75003 1.93457 1.47338 1.82073 1.75720 1.93477 1.86393 1.76875 1.41815 1.29855 1.15035 1.08794 1.14713 1.18429 0.99280 0.92556 0.89102 1.20689 0.98541 1.15949 1.21972 0.93411 1.25513 0.94946 0.98869 0.96691 1.70018 1.00749 1.39211 1.42809 0.85916 0.78834 0.79739 0.79573 1.20470 1.19642 1.19255 1.23247 0.93733 1.01841 1.04443 1.22510 0.96304 0.98910 0.99979 0.92819 0.92672 0.90105 0.89605 0.92289 0.89247 0.91008 0.93372 0.89914 0.92759 0.91138 0.74156 0.86242 0.84868 0.92565 0.88220 0.89922 0.91526 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 113.37 1.23 1.68 16 2 O -0.41 -9.94 8.46 -148.98 -1.26 -11.20 16 3 C 0.08 1.57 3.35 31.32 0.11 1.67 16 4 H 0.09 1.21 7.82 -2.39 -0.02 1.19 16 5 C -0.15 -2.44 6.55 31.67 0.21 -2.24 16 6 C -0.12 -1.73 6.92 31.93 0.22 -1.51 16 7 C -0.13 -2.52 6.19 31.72 0.20 -2.33 16 8 C -0.09 -1.85 2.97 -10.07 -0.03 -1.88 16 9 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 10 C 0.13 3.78 4.47 86.38 0.39 4.16 16 11 N -1.11 -33.11 5.70 -187.49 -1.07 -34.18 16 12 S 2.63 109.00 5.19 -56.49 -0.29 108.71 16 13 O -1.00 -43.90 18.08 -127.65 -2.31 -46.20 16 14 O -1.00 -50.49 17.17 -127.65 -2.19 -52.68 16 15 C -0.55 -23.48 5.93 71.98 0.43 -23.05 16 16 C 0.01 0.42 1.32 -52.92 -0.07 0.35 16 17 C -0.53 -30.39 8.18 25.60 0.21 -30.18 16 18 H 0.05 2.82 7.83 -2.91 -0.02 2.80 16 19 C 0.04 2.40 5.38 84.65 0.46 2.86 16 20 N -0.89 -50.22 12.98 21.44 0.28 -49.95 16 21 Si 0.93 45.10 29.55 68.60 2.03 47.13 16 22 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 25 C -0.20 -8.55 9.96 30.62 0.30 -8.25 16 26 C -0.14 -6.29 9.49 30.62 0.29 -6.00 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.23 7.76 -2.39 -0.02 1.22 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.91 7.46 -2.39 -0.02 1.89 16 37 H 0.07 1.99 7.65 -2.39 -0.02 1.97 16 38 H 0.42 9.82 8.62 -96.74 -0.83 8.98 16 39 H 0.12 5.45 8.14 -2.39 -0.02 5.43 16 40 H 0.13 4.57 8.09 -2.39 -0.02 4.55 16 41 H 0.27 14.18 8.32 -92.71 -0.77 13.41 16 42 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 43 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 44 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -73.05 377.43 -0.75 -73.80 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.13 Total: 29.27 kcal Atomic # 6 Polarization: -68.63 SS G_CDS: 3.93 Total: -64.70 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -0.79 Total: -84.13 kcal Atomic # 8 Polarization: -104.33 SS G_CDS: -5.76 Total: -110.09 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 109.00 SS G_CDS: -0.29 Total: 108.71 kcal Total: -73.05 -0.75 -73.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451369129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.419 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds