Wall clock time and date at job start Tue Mar 31 2020 11:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99912 * 2 1 4 4 H 1.09000 * 110.05493 * 28.57921 * 3 2 1 5 5 C 1.54263 * 110.03099 * 267.16361 * 3 2 1 6 6 C 1.54894 * 104.19868 * 217.10657 * 5 3 2 7 7 C 1.54888 * 102.74561 * 37.93810 * 6 5 3 8 8 C 1.53873 * 110.03468 * 149.99752 * 3 2 1 9 9 H 1.08999 * 110.03306 * 238.61908 * 8 3 2 10 10 C 1.52999 * 110.03089 * 359.97438 * 8 3 2 11 11 N 1.46501 * 109.46927 * 185.00323 * 10 8 3 12 12 S 1.65601 * 119.99810 * 165.00263 * 11 10 8 13 13 O 1.42102 * 104.27806 * 308.92157 * 12 11 10 14 14 O 1.42099 * 104.27789 * 181.06974 * 12 11 10 15 15 C 1.81396 * 104.45327 * 64.99400 * 12 11 10 16 16 C 1.53004 * 109.47302 * 185.95320 * 15 12 11 17 17 C 1.50703 * 115.55252 * 299.56974 * 16 15 12 18 18 H 1.07993 * 120.00425 * 93.79590 * 17 16 15 19 19 C 1.37880 * 119.99373 * 273.79855 * 17 16 15 20 20 N 1.31508 * 119.99757 * 181.15775 * 19 17 16 21 21 Si 1.86798 * 120.00142 * 1.16239 * 19 17 16 22 22 H 1.48512 * 109.46974 * 274.82656 * 21 19 17 23 23 H 1.48495 * 109.47309 * 154.83170 * 21 19 17 24 24 H 1.48498 * 109.47504 * 34.82657 * 21 19 17 25 25 C 1.52999 * 117.51398 * 85.26502 * 16 15 12 26 26 C 1.53000 * 117.49744 * 153.89236 * 16 15 12 27 27 H 1.09005 * 109.46614 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47287 * 299.99983 * 1 2 3 29 29 H 1.08997 * 109.46895 * 60.00508 * 1 2 3 30 30 H 1.09008 * 110.48492 * 335.78286 * 5 3 2 31 31 H 1.09002 * 110.49256 * 98.29178 * 5 3 2 32 32 H 1.08992 * 110.75618 * 156.25837 * 6 5 3 33 33 H 1.08995 * 110.75094 * 279.44419 * 6 5 3 34 34 H 1.09001 * 110.48855 * 203.37734 * 7 6 5 35 35 H 1.09002 * 110.48422 * 80.74000 * 7 6 5 36 36 H 1.08994 * 109.47853 * 64.99988 * 10 8 3 37 37 H 1.09003 * 109.47143 * 304.99777 * 10 8 3 38 38 H 0.96996 * 120.00041 * 344.99320 * 11 10 8 39 39 H 1.09004 * 109.47037 * 65.95883 * 15 12 11 40 40 H 1.08995 * 109.47017 * 305.95548 * 15 12 11 41 41 H 0.97002 * 120.00035 * 179.97438 * 20 19 17 42 42 H 1.09007 * 117.50164 * 214.97285 * 25 16 15 43 43 H 1.08999 * 117.50280 * 359.97438 * 25 16 15 44 44 H 1.08997 * 117.49968 * 359.97438 * 26 16 15 45 45 H 1.09001 * 117.49511 * 145.00774 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3408 2.0126 0.4898 5 6 2.2906 1.7590 -1.4475 6 6 3.6254 2.5388 -1.3495 7 6 4.4266 1.7156 -0.3106 8 6 3.3683 1.2779 0.7229 9 1 3.3577 1.9710 1.5640 10 6 3.6709 -0.1386 1.2159 11 7 4.9059 -0.1279 2.0039 12 16 5.2846 -1.4207 2.9670 13 8 4.1121 -1.6371 3.7402 14 8 6.5106 -1.0513 3.5833 15 6 5.5431 -2.7901 1.8058 16 6 5.7569 -4.0880 2.5872 17 6 6.9442 -4.1000 3.5153 18 1 6.8199 -3.8351 4.5548 19 6 8.1894 -4.4491 3.0370 20 7 9.2213 -4.4817 3.8517 21 14 8.4107 -4.8758 1.2319 22 1 8.0880 -6.3097 1.0190 23 1 9.8178 -4.6206 0.8318 24 1 7.5023 -4.0367 0.4098 25 6 4.5123 -4.8642 3.0224 26 6 5.3914 -5.4003 1.8907 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 2.4007 0.8953 -2.1034 31 1 1.4921 2.4090 -1.8052 32 1 4.1376 2.5502 -2.3115 33 1 3.4540 3.5543 -0.9927 34 1 5.1881 2.3357 0.1623 35 1 4.8817 0.8449 -0.7828 36 1 3.7915 -0.8031 0.3604 37 1 2.8470 -0.4911 1.8364 38 1 5.5017 0.6363 1.9614 39 1 6.4213 -2.5860 1.1931 40 1 4.6681 -2.8923 1.1640 41 1 10.0972 -4.7277 3.5153 42 1 4.5523 -5.3836 3.9800 43 1 3.5409 -4.4501 2.7525 44 1 4.9982 -5.3390 0.8760 45 1 6.0097 -6.2723 2.1037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451369130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:17 Heat of formation + Delta-G solvation = -102.246121 kcal Electronic energy + Delta-G solvation = -26002.522872 eV Core-core repulsion = 22340.780284 eV Total energy + Delta-G solvation = -3661.742588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.65216 -37.07589 -36.54435 -36.18463 -35.06781 -34.46658 -32.13016 -29.54252 -28.49008 -28.42525 -26.33363 -25.48313 -24.27496 -21.66710 -21.14399 -20.06819 -19.48818 -18.57355 -17.26953 -17.01500 -16.58640 -15.98405 -15.70395 -15.24080 -15.16497 -14.79331 -14.74727 -14.27217 -14.17005 -13.78488 -13.56413 -13.04720 -12.80528 -12.58693 -12.56672 -12.32293 -11.83982 -11.65970 -11.33619 -11.31508 -11.29568 -11.17823 -11.13125 -10.96217 -10.87094 -10.84291 -10.58836 -10.58304 -10.33171 -10.06486 -9.79046 -9.68022 -9.20440 -9.08751 -8.63359 -8.40878 -6.13078 -4.21404 1.06524 3.25574 3.34474 3.35952 3.44659 3.55023 4.26107 4.29155 4.38152 4.53052 4.60313 4.83399 4.91459 4.94172 5.03435 5.08610 5.11322 5.12491 5.18748 5.27927 5.32899 5.36497 5.48342 5.53775 5.58268 5.64546 5.74472 5.75785 5.85435 5.90279 5.98012 6.01604 6.07743 6.12404 6.24337 6.29811 6.46771 6.69184 6.91970 6.97786 7.10045 7.32179 7.63155 8.40480 8.91402 9.47953 10.98545 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.004085 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.623804 B = 6852.998866 C = 7066.821508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.089 3.911 4 H 0.067 0.933 5 C -0.146 4.146 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.097 4.097 9 H 0.088 0.912 10 C 0.134 3.866 11 N -1.136 6.136 12 S 2.619 3.381 13 O -0.968 6.968 14 O -0.941 6.941 15 C -0.578 4.578 16 C 0.001 3.999 17 C -0.512 4.512 18 H 0.086 0.914 19 C 0.090 3.910 20 N -0.882 5.882 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.292 1.292 24 H -0.259 1.259 25 C -0.174 4.174 26 C -0.187 4.187 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.410 0.590 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.267 0.733 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.189 13.028 -12.808 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.030 3.970 4 H 0.085 0.915 5 C -0.184 4.184 6 C -0.160 4.160 7 C -0.161 4.161 8 C -0.117 4.117 9 H 0.106 0.894 10 C 0.007 3.993 11 N -0.893 5.893 12 S 2.714 3.286 13 O -0.958 6.958 14 O -0.931 6.931 15 C -0.710 4.710 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.104 0.896 19 C -0.115 4.115 20 N -0.517 5.517 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.218 1.218 24 H -0.184 1.184 25 C -0.211 4.211 26 C -0.226 4.226 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.243 0.757 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.946 12.703 -11.811 22.897 hybrid contribution 0.282 0.048 -1.822 1.844 sum -14.665 12.752 -13.633 23.739 Atomic orbital electron populations 1.22796 0.81215 1.02939 0.99736 1.87977 1.19506 1.27267 1.94890 1.22829 0.94184 0.84769 0.95218 0.91512 1.22903 0.97818 1.00545 0.97157 1.22407 0.95507 0.98619 0.99489 1.22497 0.97284 1.00303 0.96013 1.22113 0.93670 0.97686 0.98229 0.89400 1.21056 0.86215 0.96686 0.95318 1.56071 1.31862 1.35988 1.65418 1.04782 0.74058 0.74641 0.75150 1.93497 1.49980 1.85783 1.66575 1.93597 1.45643 1.80999 1.72870 1.30283 1.09102 1.16632 1.14960 1.18844 0.96888 0.86332 0.98053 1.20353 0.89459 1.48775 0.96276 0.89565 1.24943 0.95467 0.93613 0.97472 1.69886 1.00218 1.46225 1.35390 0.86925 0.76933 0.79684 0.86057 1.19914 1.21823 1.18374 1.22967 0.93954 1.05186 0.99037 1.22992 1.04519 0.99476 0.95619 0.89519 0.93957 0.94289 0.90300 0.91649 0.91221 0.91405 0.91015 0.90590 0.91669 0.89818 0.75734 0.85590 0.87616 0.92286 0.88725 0.90114 0.90715 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.38 -3.96 8.46 -35.23 -0.30 -4.26 16 3 C 0.09 0.79 3.36 -25.62 -0.09 0.71 16 4 H 0.07 0.51 7.81 -51.93 -0.41 0.11 16 5 C -0.15 -1.11 6.56 -25.07 -0.16 -1.28 16 6 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 7 C -0.12 -1.07 5.90 -25.07 -0.15 -1.22 16 8 C -0.10 -0.96 3.03 -89.51 -0.27 -1.23 16 9 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.13 1.71 4.47 -4.04 -0.02 1.69 16 11 N -1.14 -16.76 5.80 -10.61 -0.06 -16.82 16 12 S 2.62 53.20 5.11 -107.50 -0.55 52.65 16 13 O -0.97 -21.50 17.50 -57.54 -1.01 -22.51 16 14 O -0.94 -23.09 17.57 -57.54 -1.01 -24.10 16 15 C -0.58 -11.65 5.71 37.16 0.21 -11.44 16 16 C 0.00 0.04 0.87 -155.66 -0.14 -0.10 16 17 C -0.51 -14.55 8.47 -34.44 -0.29 -14.84 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.09 2.60 5.47 -17.82 -0.10 2.50 16 20 N -0.88 -27.12 13.96 55.43 0.77 -26.35 16 21 Si 0.88 21.42 24.93 -169.99 -4.24 17.18 16 22 H -0.27 -6.47 7.07 56.52 0.40 -6.07 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.26 -5.84 5.67 56.52 0.32 -5.52 16 25 C -0.17 -3.66 9.95 -26.73 -0.27 -3.92 16 26 C -0.19 -3.96 7.68 -26.73 -0.21 -4.16 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.30 8.10 -51.93 -0.42 -0.12 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.66 8.08 -51.92 -0.42 0.24 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.71 7.76 -51.93 -0.40 0.31 16 36 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 37 H 0.08 1.17 7.20 -51.93 -0.37 0.80 16 38 H 0.41 5.22 8.28 -34.47 -0.29 4.93 16 39 H 0.13 2.51 6.33 -51.92 -0.33 2.18 16 40 H 0.11 1.74 8.11 -51.93 -0.42 1.32 16 41 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.03 7.30 -51.93 -0.38 1.65 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -35.25 367.03 -9.12 -44.37 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.72 Total: 7.30 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: -0.55 Total: -33.01 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.71 Total: -43.16 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -2.32 Total: -50.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.24 Total: 17.18 kcal Atomic # 16 Polarization: 53.20 SS G_CDS: -0.55 Total: 52.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.25 -9.12 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451369130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.871 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds