Wall clock time and date at job start Tue Mar 31 2020 11:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99912 * 2 1 4 4 H 1.09000 * 110.05493 * 28.57921 * 3 2 1 5 5 C 1.54263 * 110.03099 * 267.16361 * 3 2 1 6 6 C 1.54894 * 104.19868 * 217.10657 * 5 3 2 7 7 C 1.54888 * 102.74561 * 37.93810 * 6 5 3 8 8 C 1.53873 * 110.03468 * 149.99752 * 3 2 1 9 9 H 1.08999 * 110.03306 * 238.61908 * 8 3 2 10 10 C 1.52999 * 110.03089 * 359.97438 * 8 3 2 11 11 N 1.46501 * 109.46927 * 185.00323 * 10 8 3 12 12 S 1.65601 * 119.99810 * 165.00263 * 11 10 8 13 13 O 1.42102 * 104.27806 * 308.92157 * 12 11 10 14 14 O 1.42099 * 104.27789 * 181.06974 * 12 11 10 15 15 C 1.81396 * 104.45327 * 64.99400 * 12 11 10 16 16 C 1.53004 * 109.47302 * 185.95320 * 15 12 11 17 17 C 1.50703 * 115.55252 * 299.56974 * 16 15 12 18 18 H 1.07993 * 120.00425 * 93.79590 * 17 16 15 19 19 C 1.37880 * 119.99373 * 273.79855 * 17 16 15 20 20 N 1.31508 * 119.99757 * 181.15775 * 19 17 16 21 21 Si 1.86798 * 120.00142 * 1.16239 * 19 17 16 22 22 H 1.48512 * 109.46974 * 274.82656 * 21 19 17 23 23 H 1.48495 * 109.47309 * 154.83170 * 21 19 17 24 24 H 1.48498 * 109.47504 * 34.82657 * 21 19 17 25 25 C 1.52999 * 117.51398 * 85.26502 * 16 15 12 26 26 C 1.53000 * 117.49744 * 153.89236 * 16 15 12 27 27 H 1.09005 * 109.46614 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47287 * 299.99983 * 1 2 3 29 29 H 1.08997 * 109.46895 * 60.00508 * 1 2 3 30 30 H 1.09008 * 110.48492 * 335.78286 * 5 3 2 31 31 H 1.09002 * 110.49256 * 98.29178 * 5 3 2 32 32 H 1.08992 * 110.75618 * 156.25837 * 6 5 3 33 33 H 1.08995 * 110.75094 * 279.44419 * 6 5 3 34 34 H 1.09001 * 110.48855 * 203.37734 * 7 6 5 35 35 H 1.09002 * 110.48422 * 80.74000 * 7 6 5 36 36 H 1.08994 * 109.47853 * 64.99988 * 10 8 3 37 37 H 1.09003 * 109.47143 * 304.99777 * 10 8 3 38 38 H 0.96996 * 120.00041 * 344.99320 * 11 10 8 39 39 H 1.09004 * 109.47037 * 65.95883 * 15 12 11 40 40 H 1.08995 * 109.47017 * 305.95548 * 15 12 11 41 41 H 0.97002 * 120.00035 * 179.97438 * 20 19 17 42 42 H 1.09007 * 117.50164 * 214.97285 * 25 16 15 43 43 H 1.08999 * 117.50280 * 359.97438 * 25 16 15 44 44 H 1.08997 * 117.49968 * 359.97438 * 26 16 15 45 45 H 1.09001 * 117.49511 * 145.00774 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3408 2.0126 0.4898 5 6 2.2906 1.7590 -1.4475 6 6 3.6254 2.5388 -1.3495 7 6 4.4266 1.7156 -0.3106 8 6 3.3683 1.2779 0.7229 9 1 3.3577 1.9710 1.5640 10 6 3.6709 -0.1386 1.2159 11 7 4.9059 -0.1279 2.0039 12 16 5.2846 -1.4207 2.9670 13 8 4.1121 -1.6371 3.7402 14 8 6.5106 -1.0513 3.5833 15 6 5.5431 -2.7901 1.8058 16 6 5.7569 -4.0880 2.5872 17 6 6.9442 -4.1000 3.5153 18 1 6.8199 -3.8351 4.5548 19 6 8.1894 -4.4491 3.0370 20 7 9.2213 -4.4817 3.8517 21 14 8.4107 -4.8758 1.2319 22 1 8.0880 -6.3097 1.0190 23 1 9.8178 -4.6206 0.8318 24 1 7.5023 -4.0367 0.4098 25 6 4.5123 -4.8642 3.0224 26 6 5.3914 -5.4003 1.8907 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 2.4007 0.8953 -2.1034 31 1 1.4921 2.4090 -1.8052 32 1 4.1376 2.5502 -2.3115 33 1 3.4540 3.5543 -0.9927 34 1 5.1881 2.3357 0.1623 35 1 4.8817 0.8449 -0.7828 36 1 3.7915 -0.8031 0.3604 37 1 2.8470 -0.4911 1.8364 38 1 5.5017 0.6363 1.9614 39 1 6.4213 -2.5860 1.1931 40 1 4.6681 -2.8923 1.1640 41 1 10.0972 -4.7277 3.5153 42 1 4.5523 -5.3836 3.9800 43 1 3.5409 -4.4501 2.7525 44 1 4.9982 -5.3390 0.8760 45 1 6.0097 -6.2723 2.1037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451369130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:16 Heat of formation + Delta-G solvation = -129.398227 kcal Electronic energy + Delta-G solvation = -26003.700275 eV Core-core repulsion = 22340.780284 eV Total energy + Delta-G solvation = -3662.919991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.34129 -38.83880 -37.95780 -37.26505 -36.78651 -35.47484 -34.29798 -30.38160 -30.08382 -29.07755 -27.60549 -26.93951 -25.18340 -23.33639 -21.76211 -21.39121 -20.70761 -20.16896 -18.65268 -18.36682 -18.05059 -17.10779 -16.96058 -16.69462 -16.51381 -16.00324 -15.54786 -15.42800 -15.37321 -15.06811 -14.83253 -14.56400 -14.29931 -14.01417 -13.69250 -13.32127 -13.18970 -12.95865 -12.91341 -12.88288 -12.62953 -12.36958 -12.28699 -12.13140 -12.04993 -11.90099 -11.86199 -11.71729 -11.60721 -11.47248 -11.40586 -10.98810 -10.71593 -10.50561 -10.38774 -10.08974 -8.32006 -6.46243 -0.52827 1.35316 1.36947 1.49226 2.04323 2.35435 2.89975 2.94566 2.99367 3.15167 3.42817 3.60870 3.63998 3.82499 3.88902 4.16246 4.27741 4.33685 4.36879 4.39244 4.41091 4.50734 4.54182 4.60991 4.62270 4.63814 4.77227 4.84215 4.85935 4.93635 5.01149 5.02675 5.07435 5.08991 5.20716 5.22336 5.29048 5.32516 5.45664 5.51095 5.61622 6.17467 6.19281 6.38062 6.65422 7.27239 8.84515 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.004085 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.623804 B = 6852.998866 C = 7066.821508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.086 3.914 4 H 0.079 0.921 5 C -0.142 4.142 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.097 4.097 9 H 0.091 0.909 10 C 0.127 3.873 11 N -1.117 6.117 12 S 2.623 3.377 13 O -0.995 6.995 14 O -0.997 6.997 15 C -0.572 4.572 16 C -0.035 4.035 17 C -0.516 4.516 18 H 0.027 0.973 19 C 0.027 3.973 20 N -0.941 5.941 21 Si 0.935 3.065 22 H -0.257 1.257 23 H -0.295 1.295 24 H -0.220 1.220 25 C -0.170 4.170 26 C -0.169 4.169 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.420 0.580 39 H 0.133 0.867 40 H 0.153 0.847 41 H 0.269 0.731 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.370 13.653 -16.779 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.027 3.973 4 H 0.097 0.903 5 C -0.179 4.179 6 C -0.155 4.155 7 C -0.164 4.164 8 C -0.118 4.118 9 H 0.109 0.891 10 C 0.002 3.998 11 N -0.879 5.879 12 S 2.720 3.280 13 O -0.985 6.985 14 O -0.987 6.987 15 C -0.704 4.704 16 C -0.037 4.037 17 C -0.553 4.553 18 H 0.046 0.954 19 C -0.172 4.172 20 N -0.579 5.579 21 Si 0.757 3.243 22 H -0.181 1.181 23 H -0.222 1.222 24 H -0.143 1.143 25 C -0.207 4.207 26 C -0.207 4.207 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.256 0.744 39 H 0.151 0.849 40 H 0.171 0.829 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.164 13.348 -15.770 26.860 hybrid contribution 0.869 -0.116 -0.468 0.993 sum -16.295 13.232 -16.237 26.538 Atomic orbital electron populations 1.22932 0.80076 1.03526 1.00655 1.87928 1.20886 1.28140 1.95081 1.22931 0.93600 0.84681 0.96044 0.90332 1.22868 0.98510 1.00521 0.96036 1.22402 0.94994 0.98798 0.99337 1.22528 0.97254 1.00489 0.96128 1.22156 0.94998 0.95750 0.98854 0.89112 1.21282 0.84464 0.99086 0.94959 1.55541 1.32827 1.34595 1.64918 1.04278 0.72601 0.75510 0.75651 1.93456 1.50349 1.86488 1.68174 1.93527 1.47942 1.82176 1.75059 1.30129 1.11543 1.14052 1.14706 1.18778 0.96304 0.89147 0.99499 1.20461 0.92016 1.47942 0.94909 0.95423 1.25958 0.94818 0.93455 1.03001 1.70060 1.01024 1.48613 1.38214 0.85974 0.77486 0.80894 0.79900 1.18110 1.22220 1.14269 1.23056 0.94497 1.04179 0.98968 1.23087 1.03264 0.96889 0.97509 0.89202 0.93576 0.92828 0.91071 0.90159 0.90521 0.90359 0.90493 0.91167 0.90472 0.91087 0.74415 0.84935 0.82918 0.92230 0.90155 0.87012 0.86508 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -7.38 8.46 -148.98 -1.26 -8.64 16 3 C 0.09 1.30 3.36 31.32 0.11 1.41 16 4 H 0.08 0.98 7.81 -2.39 -0.02 0.97 16 5 C -0.14 -1.70 6.56 31.67 0.21 -1.50 16 6 C -0.12 -1.32 6.91 31.89 0.22 -1.10 16 7 C -0.13 -1.86 5.90 31.67 0.19 -1.67 16 8 C -0.10 -1.70 3.03 -10.07 -0.03 -1.73 16 9 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 10 C 0.13 2.98 4.47 86.38 0.39 3.36 16 11 N -1.12 -31.40 5.80 -187.49 -1.09 -32.49 16 12 S 2.62 106.10 5.11 -56.49 -0.29 105.81 16 13 O -0.99 -44.31 17.50 -127.65 -2.23 -46.54 16 14 O -1.00 -50.83 17.57 -127.65 -2.24 -53.07 16 15 C -0.57 -21.45 5.71 71.98 0.41 -21.04 16 16 C -0.03 -1.58 0.87 -52.93 -0.05 -1.63 16 17 C -0.52 -30.32 8.47 25.60 0.22 -30.10 16 18 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 19 C 0.03 1.59 5.47 84.66 0.46 2.05 16 20 N -0.94 -60.63 13.96 21.45 0.30 -60.33 16 21 Si 0.94 42.99 24.93 68.60 1.71 44.70 16 22 H -0.26 -11.05 7.07 99.48 0.70 -10.35 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.22 -8.67 5.67 99.48 0.56 -8.10 16 25 C -0.17 -6.78 9.95 30.59 0.30 -6.48 16 26 C -0.17 -6.50 7.68 30.59 0.23 -6.27 16 27 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 0.55 8.10 -2.39 -0.02 0.53 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.98 8.08 -2.38 -0.02 0.96 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.12 7.76 -2.39 -0.02 1.10 16 36 H 0.08 1.63 7.91 -2.39 -0.02 1.62 16 37 H 0.07 1.87 7.20 -2.39 -0.02 1.85 16 38 H 0.42 10.22 8.28 -96.75 -0.80 9.42 16 39 H 0.13 4.81 6.33 -2.39 -0.02 4.80 16 40 H 0.15 4.24 8.11 -2.39 -0.02 4.22 16 41 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 42 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 43 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 44 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.08 3.31 7.30 -2.39 -0.02 3.29 16 Total: -1.00 -81.13 367.03 -1.19 -82.33 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.02 Total: 31.38 kcal Atomic # 6 Polarization: -67.03 SS G_CDS: 3.89 Total: -63.15 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -0.79 Total: -92.82 kcal Atomic # 8 Polarization: -102.52 SS G_CDS: -5.74 Total: -108.25 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.71 Total: 44.70 kcal Atomic # 16 Polarization: 106.10 SS G_CDS: -0.29 Total: 105.81 kcal Total: -81.13 -1.19 -82.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451369130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.071 kcal (2) G-P(sol) polarization free energy of solvation -81.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds