Wall clock time and date at job start Tue Mar 31 2020 11:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00318 * 2 1 4 4 H 1.08998 * 109.46885 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46791 * 60.00251 * 3 2 1 6 6 C 1.53000 * 109.47133 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47000 * 59.99505 * 6 5 3 8 8 C 1.53002 * 109.47582 * 300.00220 * 7 6 5 9 9 C 1.52999 * 109.46818 * 300.00295 * 3 2 1 10 10 H 1.08997 * 109.47336 * 60.00321 * 9 3 2 11 11 O 1.42897 * 109.47464 * 299.99542 * 9 3 2 12 12 S 1.65604 * 119.99899 * 180.02562 * 2 1 3 13 13 O 1.42099 * 104.27524 * 206.07090 * 12 2 1 14 14 O 1.42098 * 104.27621 * 333.92421 * 12 2 1 15 15 C 1.81394 * 104.45010 * 89.99923 * 12 2 1 16 16 C 1.53004 * 109.46998 * 173.68709 * 15 12 2 17 17 C 1.50692 * 115.55283 * 39.88968 * 16 15 12 18 18 H 1.08001 * 120.00067 * 264.78628 * 17 16 15 19 19 C 1.37880 * 119.99921 * 84.78726 * 17 16 15 20 20 N 1.31513 * 119.99840 * 353.78132 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 173.77807 * 19 17 16 22 22 H 1.48496 * 109.46911 * 60.00118 * 21 19 17 23 23 H 1.48495 * 109.47094 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47097 * 300.00411 * 21 19 17 25 25 C 1.53003 * 117.49283 * 254.18176 * 16 15 12 26 26 C 1.52998 * 60.00021 * 252.51078 * 25 16 15 27 27 H 1.08996 * 109.47256 * 89.99698 * 1 2 3 28 28 H 1.09002 * 109.47327 * 209.99854 * 1 2 3 29 29 H 1.09003 * 109.47013 * 330.00010 * 1 2 3 30 30 H 1.09007 * 109.46787 * 300.00004 * 5 3 2 31 31 H 1.08996 * 109.47078 * 59.99846 * 5 3 2 32 32 H 1.08995 * 109.47314 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.47145 * 300.00150 * 6 5 3 34 34 H 1.09008 * 109.47344 * 60.00575 * 7 6 5 35 35 H 1.09000 * 109.47076 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.47082 * 179.97438 * 8 7 6 37 37 H 1.08996 * 109.47194 * 299.99845 * 8 7 6 38 38 H 0.96696 * 114.00341 * 180.02562 * 11 9 3 39 39 H 1.09004 * 109.47011 * 293.68123 * 15 12 2 40 40 H 1.08997 * 109.47426 * 53.68491 * 15 12 2 41 41 H 0.97003 * 119.99823 * 185.01776 * 20 19 17 42 42 H 1.09001 * 117.50496 * 0.02562 * 25 16 15 43 43 H 1.09010 * 117.49533 * 145.02083 * 25 16 15 44 44 H 1.08997 * 117.50109 * 252.51382 * 26 25 16 45 45 H 1.09000 * 117.49901 * 107.49168 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2692 1.0694 0.0005 5 6 1.8280 2.0709 1.2493 6 6 2.5925 3.3962 1.2491 7 6 2.2224 4.1983 -0.0002 8 6 2.5920 3.3960 -1.2495 9 6 1.8279 2.0710 -1.2492 10 1 0.7563 2.2703 -1.2492 11 8 2.1731 1.3218 -2.4160 12 16 2.2930 -1.4342 -0.0006 13 8 3.5394 -1.1194 0.6047 14 8 1.3970 -2.3564 0.6043 15 6 2.5193 -1.8254 -1.7574 16 6 3.4145 -3.0587 -1.8940 17 6 3.1684 -4.1549 -0.8897 18 1 3.7637 -4.2067 0.0100 19 6 2.1834 -5.0920 -1.1195 20 7 1.3783 -4.9603 -2.1510 21 14 1.9925 -6.5485 0.0344 22 1 1.7084 -6.0586 1.4071 23 1 0.8700 -7.4032 -0.4289 24 1 3.2477 -7.3419 0.0419 25 6 4.8547 -2.8379 -2.3609 26 6 3.8334 -3.4746 -3.3055 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.7563 2.2701 1.2493 31 1 2.0913 1.4993 2.1392 32 1 2.3296 3.9676 2.1393 33 1 3.6643 3.1974 1.2488 34 1 1.1506 4.3972 0.0000 35 1 2.7667 5.1426 -0.0001 36 1 2.3279 3.9673 -2.1395 37 1 3.6637 3.1972 -1.2497 38 1 1.9666 1.7708 -3.2472 39 1 1.5497 -2.0281 -2.2123 40 1 2.9870 -0.9793 -2.2607 41 1 0.6402 -5.5779 -2.2721 42 1 5.1646 -1.8140 -2.5703 43 1 5.6246 -3.4856 -1.9415 44 1 3.9313 -4.5412 -3.5076 45 1 3.4712 -2.8698 -4.1368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451422974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:23 Heat of formation + Delta-G solvation = -108.691429 kcal Electronic energy + Delta-G solvation = -27070.820898 eV Core-core repulsion = 23408.798821 eV Total energy + Delta-G solvation = -3662.022077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.44940 -36.59706 -36.01944 -35.70801 -34.99986 -34.64400 -31.95845 -30.13199 -29.00806 -27.96272 -25.93154 -25.27751 -22.72540 -22.01153 -21.08820 -19.79242 -19.38016 -18.15143 -17.28904 -16.88722 -16.33197 -16.01822 -15.02209 -14.88327 -14.55924 -14.49031 -14.18442 -13.99699 -13.67988 -13.47002 -13.28321 -12.93545 -12.84693 -12.29186 -12.08692 -11.96876 -11.78534 -11.67628 -11.34590 -11.22233 -10.99498 -10.91041 -10.86036 -10.80204 -10.74365 -10.71980 -10.45663 -10.25841 -10.14783 -9.96302 -9.88464 -9.56681 -8.86888 -8.58533 -8.42812 -7.95592 -6.06942 -4.21247 1.34447 3.39779 3.41475 3.49643 3.55893 4.07355 4.47068 4.55913 4.63725 4.81778 4.91651 5.00749 5.05569 5.13699 5.18487 5.23871 5.26058 5.33924 5.36072 5.45653 5.56267 5.72147 5.76299 5.84358 5.87694 5.94319 5.96930 5.98231 6.09970 6.15170 6.19226 6.20852 6.44809 6.50066 6.58142 6.78117 6.82313 7.04833 7.10857 7.31946 7.49739 7.67184 7.86711 8.30138 8.86614 9.54967 11.00638 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.004927 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.020883 B = 5681.846016 C = 6198.120348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.006 6.006 3 C 0.158 3.842 4 H 0.104 0.896 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.153 4.153 9 C 0.095 3.905 10 H 0.058 0.942 11 O -0.557 6.557 12 S 2.623 3.377 13 O -0.978 6.978 14 O -0.946 6.946 15 C -0.549 4.549 16 C 0.051 3.949 17 C -0.542 4.542 18 H 0.067 0.933 19 C 0.097 3.903 20 N -0.867 5.867 21 Si 0.889 3.111 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.205 4.205 26 C -0.144 4.144 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.375 0.625 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.264 0.736 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 18.535 0.512 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.840 5.840 3 C 0.051 3.949 4 H 0.122 0.878 5 C -0.164 4.164 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.191 4.191 9 C 0.035 3.965 10 H 0.076 0.924 11 O -0.362 6.362 12 S 2.722 3.278 13 O -0.969 6.969 14 O -0.936 6.936 15 C -0.682 4.682 16 C 0.048 3.952 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.110 4.110 20 N -0.502 5.502 21 Si 0.715 3.285 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.243 4.243 26 C -0.182 4.182 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.222 0.778 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.836 17.515 1.639 17.687 hybrid contribution -0.616 -0.096 -0.748 0.973 sum -2.452 17.420 0.892 17.614 Atomic orbital electron populations 1.21442 0.79700 1.03434 1.01442 1.57907 1.14609 1.21189 1.90271 1.20778 0.97807 0.83841 0.92484 0.87763 1.21861 1.00770 0.95858 0.97958 1.21570 1.00960 0.95626 0.97807 1.21502 1.01399 0.98327 0.94263 1.22291 1.01989 0.96344 0.98488 1.22203 0.97677 0.90186 0.86472 0.92447 1.86591 1.86986 1.47070 1.15560 1.04670 0.73289 0.71263 0.78553 1.93440 1.44670 1.83398 1.75349 1.93500 1.64705 1.60757 1.74677 1.29880 1.09524 1.05885 1.22871 1.18208 0.89210 0.91794 0.95945 1.20565 1.20584 1.11195 1.05610 0.91519 1.24884 0.94603 0.97207 0.94257 1.69956 1.15062 1.37282 1.27866 0.86680 0.77705 0.81967 0.82115 1.19187 1.21009 1.19963 1.23110 0.94421 0.99582 1.07143 1.22496 1.02817 0.99533 0.93402 0.93301 0.89738 0.91749 0.91315 0.90545 0.91458 0.91305 0.91900 0.91668 0.91586 0.90732 0.77840 0.85949 0.87469 0.92615 0.91261 0.89905 0.89805 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 9.70 59.85 0.58 1.81 16 2 N -1.01 -17.09 2.87 -114.61 -0.33 -17.42 16 3 C 0.16 2.26 2.15 -67.93 -0.15 2.11 16 4 H 0.10 1.69 6.87 -51.93 -0.36 1.34 16 5 C -0.13 -1.45 5.18 -26.73 -0.14 -1.59 16 6 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 7 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 8 C -0.15 -1.35 5.54 -26.75 -0.15 -1.50 16 9 C 0.10 1.08 2.79 -26.75 -0.07 1.00 16 10 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 11 O -0.56 -6.93 12.04 -35.23 -0.42 -7.35 16 12 S 2.62 59.43 4.58 -107.50 -0.49 58.94 16 13 O -0.98 -23.89 16.57 -57.54 -0.95 -24.84 16 14 O -0.95 -24.61 15.72 -57.54 -0.90 -25.52 16 15 C -0.55 -12.49 6.29 37.16 0.23 -12.25 16 16 C 0.05 1.30 1.64 -155.66 -0.26 1.04 16 17 C -0.54 -15.50 6.90 -34.44 -0.24 -15.74 16 18 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 19 C 0.10 2.78 5.39 -17.82 -0.10 2.68 16 20 N -0.87 -24.78 12.93 55.43 0.72 -24.07 16 21 Si 0.89 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.21 -4.72 9.88 -26.73 -0.26 -4.98 16 26 C -0.14 -3.43 9.47 -26.73 -0.25 -3.69 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.35 6.91 -51.93 -0.36 0.99 16 29 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 30 H 0.07 0.70 6.66 -51.93 -0.35 0.35 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.37 2.99 9.08 45.56 0.41 3.41 16 39 H 0.12 2.85 8.14 -51.92 -0.42 2.43 16 40 H 0.11 2.18 6.78 -51.93 -0.35 1.83 16 41 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 42 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 43 H 0.08 1.87 8.14 -51.92 -0.42 1.45 16 44 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 45 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -34.34 364.71 -9.80 -44.14 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.77 Total: 6.70 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: -1.12 Total: -33.45 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.39 Total: -41.49 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -2.28 Total: -57.71 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 59.43 SS G_CDS: -0.49 Total: 58.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.34 -9.80 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451422974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.549 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds