Wall clock time and date at job start Tue Mar 31 2020 11:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00318 * 2 1 4 4 H 1.08998 * 109.46885 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46791 * 60.00251 * 3 2 1 6 6 C 1.53000 * 109.47133 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47000 * 59.99505 * 6 5 3 8 8 C 1.53002 * 109.47582 * 300.00220 * 7 6 5 9 9 C 1.52999 * 109.46818 * 300.00295 * 3 2 1 10 10 H 1.08997 * 109.47336 * 60.00321 * 9 3 2 11 11 O 1.42897 * 109.47464 * 299.99542 * 9 3 2 12 12 S 1.65604 * 119.99899 * 180.02562 * 2 1 3 13 13 O 1.42099 * 104.27524 * 206.07090 * 12 2 1 14 14 O 1.42098 * 104.27621 * 333.92421 * 12 2 1 15 15 C 1.81394 * 104.45010 * 89.99923 * 12 2 1 16 16 C 1.53004 * 109.46998 * 173.68709 * 15 12 2 17 17 C 1.50692 * 115.55283 * 39.88968 * 16 15 12 18 18 H 1.08001 * 120.00067 * 264.78628 * 17 16 15 19 19 C 1.37880 * 119.99921 * 84.78726 * 17 16 15 20 20 N 1.31513 * 119.99840 * 353.78132 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 173.77807 * 19 17 16 22 22 H 1.48496 * 109.46911 * 60.00118 * 21 19 17 23 23 H 1.48495 * 109.47094 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47097 * 300.00411 * 21 19 17 25 25 C 1.53003 * 117.49283 * 254.18176 * 16 15 12 26 26 C 1.52998 * 60.00021 * 252.51078 * 25 16 15 27 27 H 1.08996 * 109.47256 * 89.99698 * 1 2 3 28 28 H 1.09002 * 109.47327 * 209.99854 * 1 2 3 29 29 H 1.09003 * 109.47013 * 330.00010 * 1 2 3 30 30 H 1.09007 * 109.46787 * 300.00004 * 5 3 2 31 31 H 1.08996 * 109.47078 * 59.99846 * 5 3 2 32 32 H 1.08995 * 109.47314 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.47145 * 300.00150 * 6 5 3 34 34 H 1.09008 * 109.47344 * 60.00575 * 7 6 5 35 35 H 1.09000 * 109.47076 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.47082 * 179.97438 * 8 7 6 37 37 H 1.08996 * 109.47194 * 299.99845 * 8 7 6 38 38 H 0.96696 * 114.00341 * 180.02562 * 11 9 3 39 39 H 1.09004 * 109.47011 * 293.68123 * 15 12 2 40 40 H 1.08997 * 109.47426 * 53.68491 * 15 12 2 41 41 H 0.97003 * 119.99823 * 185.01776 * 20 19 17 42 42 H 1.09001 * 117.50496 * 0.02562 * 25 16 15 43 43 H 1.09010 * 117.49533 * 145.02083 * 25 16 15 44 44 H 1.08997 * 117.50109 * 252.51382 * 26 25 16 45 45 H 1.09000 * 117.49901 * 107.49168 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2692 1.0694 0.0005 5 6 1.8280 2.0709 1.2493 6 6 2.5925 3.3962 1.2491 7 6 2.2224 4.1983 -0.0002 8 6 2.5920 3.3960 -1.2495 9 6 1.8279 2.0710 -1.2492 10 1 0.7563 2.2703 -1.2492 11 8 2.1731 1.3218 -2.4160 12 16 2.2930 -1.4342 -0.0006 13 8 3.5394 -1.1194 0.6047 14 8 1.3970 -2.3564 0.6043 15 6 2.5193 -1.8254 -1.7574 16 6 3.4145 -3.0587 -1.8940 17 6 3.1684 -4.1549 -0.8897 18 1 3.7637 -4.2067 0.0100 19 6 2.1834 -5.0920 -1.1195 20 7 1.3783 -4.9603 -2.1510 21 14 1.9925 -6.5485 0.0344 22 1 1.7084 -6.0586 1.4071 23 1 0.8700 -7.4032 -0.4289 24 1 3.2477 -7.3419 0.0419 25 6 4.8547 -2.8379 -2.3609 26 6 3.8334 -3.4746 -3.3055 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 0.7563 2.2701 1.2493 31 1 2.0913 1.4993 2.1392 32 1 2.3296 3.9676 2.1393 33 1 3.6643 3.1974 1.2488 34 1 1.1506 4.3972 0.0000 35 1 2.7667 5.1426 -0.0001 36 1 2.3279 3.9673 -2.1395 37 1 3.6637 3.1972 -1.2497 38 1 1.9666 1.7708 -3.2472 39 1 1.5497 -2.0281 -2.2123 40 1 2.9870 -0.9793 -2.2607 41 1 0.6402 -5.5779 -2.2721 42 1 5.1646 -1.8140 -2.5703 43 1 5.6246 -3.4856 -1.9415 44 1 3.9313 -4.5412 -3.5076 45 1 3.4712 -2.8698 -4.1368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451422974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:22 Heat of formation + Delta-G solvation = -133.961437 kcal Electronic energy + Delta-G solvation = -27071.916688 eV Core-core repulsion = 23408.798821 eV Total energy + Delta-G solvation = -3663.117867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.36401 -38.52789 -37.89435 -36.81339 -36.52907 -35.87743 -34.10375 -30.95867 -29.94747 -29.79957 -27.59102 -26.93625 -23.54394 -22.99158 -22.91034 -21.33448 -20.65938 -19.75575 -18.60977 -18.27682 -18.05598 -17.30960 -16.89237 -16.58205 -16.14649 -15.59656 -15.40650 -15.36372 -14.89079 -14.84233 -14.47557 -14.28580 -13.85448 -13.74337 -13.67353 -13.51897 -13.21317 -13.05549 -12.91274 -12.82573 -12.74711 -12.60353 -12.43267 -12.36471 -12.09118 -12.07565 -11.89357 -11.62739 -11.57031 -11.51859 -11.11251 -10.85191 -10.70039 -10.51199 -10.07160 -9.69098 -8.22726 -6.41012 -0.39287 1.34549 1.39256 1.45144 2.05071 2.39146 3.06199 3.11708 3.23944 3.32943 3.51934 3.78262 3.83969 4.00117 4.08987 4.18363 4.24278 4.31111 4.38943 4.39459 4.51185 4.53676 4.61579 4.67514 4.71854 4.76879 4.87130 4.89803 4.96244 4.96785 5.00450 5.18144 5.20365 5.21411 5.24870 5.33353 5.36647 5.40187 5.56315 5.59460 5.67411 5.81608 6.21237 6.67614 7.02169 7.36146 8.84351 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.004927 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.020883 B = 5681.846016 C = 6198.120348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.998 5.998 3 C 0.145 3.855 4 H 0.077 0.923 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.148 4.148 9 C 0.099 3.901 10 H 0.077 0.923 11 O -0.583 6.583 12 S 2.629 3.371 13 O -1.006 7.006 14 O -0.990 6.990 15 C -0.538 4.538 16 C 0.013 3.987 17 C -0.559 4.559 18 H 0.045 0.955 19 C 0.059 3.941 20 N -0.884 5.884 21 Si 0.927 3.073 22 H -0.280 1.280 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.192 4.192 26 C -0.138 4.138 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.394 0.606 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.267 0.733 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 21.122 -0.270 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.835 5.835 3 C 0.039 3.961 4 H 0.095 0.905 5 C -0.164 4.164 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.186 4.186 9 C 0.039 3.961 10 H 0.094 0.906 11 O -0.392 6.392 12 S 2.728 3.272 13 O -0.996 6.996 14 O -0.980 6.980 15 C -0.671 4.671 16 C 0.011 3.989 17 C -0.596 4.596 18 H 0.063 0.937 19 C -0.146 4.146 20 N -0.519 5.519 21 Si 0.752 3.248 22 H -0.205 1.205 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.229 4.229 26 C -0.176 4.176 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.244 0.756 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.606 20.096 0.840 20.282 hybrid contribution -0.354 -0.824 -0.496 1.025 sum -2.960 19.272 0.344 19.501 Atomic orbital electron populations 1.21673 0.77858 1.04327 1.02744 1.57453 1.15585 1.20384 1.90091 1.21135 0.96112 0.83047 0.95779 0.90531 1.21887 1.02410 0.96450 0.95638 1.21587 0.99924 0.94609 0.99693 1.21508 1.02604 0.98360 0.92586 1.22265 1.00798 0.95336 1.00242 1.22192 0.99017 0.90285 0.84638 0.90557 1.86524 1.87365 1.48393 1.16876 1.04107 0.72694 0.72001 0.78374 1.93393 1.46212 1.84033 1.75991 1.93436 1.65537 1.63343 1.75702 1.29724 1.08636 1.05495 1.23214 1.18384 0.91615 0.92521 0.96392 1.20692 1.20540 1.12666 1.05722 0.93704 1.25451 0.94546 0.99053 0.95583 1.69994 1.15318 1.37950 1.28603 0.86087 0.78684 0.80109 0.79955 1.20535 1.19219 1.18726 1.23175 0.93179 1.00927 1.05600 1.22431 1.03009 0.98924 0.93276 0.91813 0.91886 0.87811 0.89232 0.92625 0.89648 0.92464 0.90350 0.90030 0.89140 0.92102 0.75611 0.86810 0.85159 0.92364 0.88579 0.90130 0.91590 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 9.70 127.77 1.24 3.40 16 2 N -1.00 -33.44 2.87 -516.51 -1.48 -34.92 16 3 C 0.15 3.99 2.15 44.99 0.10 4.08 16 4 H 0.08 2.52 6.87 -2.39 -0.02 2.50 16 5 C -0.12 -2.68 5.18 30.59 0.16 -2.52 16 6 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 7 C -0.11 -1.34 5.92 30.59 0.18 -1.16 16 8 C -0.15 -2.14 5.54 30.58 0.17 -1.97 16 9 C 0.10 1.96 2.79 30.58 0.09 2.05 16 10 H 0.08 1.24 7.67 -2.39 -0.02 1.23 16 11 O -0.58 -13.15 12.04 -148.98 -1.79 -14.94 16 12 S 2.63 121.85 4.58 -56.49 -0.26 121.59 16 13 O -1.01 -50.78 16.57 -127.65 -2.12 -52.89 16 14 O -0.99 -53.45 15.72 -127.65 -2.01 -55.46 16 15 C -0.54 -24.52 6.29 71.98 0.45 -24.07 16 16 C 0.01 0.66 1.64 -52.93 -0.09 0.58 16 17 C -0.56 -32.76 6.90 25.60 0.18 -32.58 16 18 H 0.04 2.74 7.82 -2.91 -0.02 2.72 16 19 C 0.06 3.39 5.39 84.66 0.46 3.85 16 20 N -0.88 -50.99 12.93 21.45 0.28 -50.72 16 21 Si 0.93 46.34 29.55 68.60 2.03 48.37 16 22 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.19 -8.69 9.88 30.59 0.30 -8.39 16 26 C -0.14 -6.52 9.47 30.59 0.29 -6.23 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 2.02 6.91 -2.39 -0.02 2.00 16 29 H 0.10 2.00 6.43 -2.39 -0.02 1.99 16 30 H 0.09 1.52 6.66 -2.38 -0.02 1.50 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.90 8.14 -2.38 -0.02 0.89 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.39 5.14 9.08 -74.06 -0.67 4.47 16 39 H 0.11 5.34 8.14 -2.39 -0.02 5.32 16 40 H 0.13 5.19 6.78 -2.39 -0.02 5.17 16 41 H 0.27 14.62 8.32 -92.71 -0.77 13.85 16 42 H 0.10 3.80 8.08 -2.39 -0.02 3.78 16 43 H 0.08 3.64 8.14 -2.38 -0.02 3.62 16 44 H 0.07 3.32 8.14 -2.39 -0.02 3.31 16 45 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 Total: -1.00 -76.28 364.71 -1.35 -77.63 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.30 Total: 26.02 kcal Atomic # 6 Polarization: -68.38 SS G_CDS: 3.70 Total: -64.68 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.20 Total: -85.64 kcal Atomic # 8 Polarization: -117.37 SS G_CDS: -5.92 Total: -123.29 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 121.85 SS G_CDS: -0.26 Total: 121.59 kcal Total: -76.28 -1.35 -77.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451422974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.333 kcal (2) G-P(sol) polarization free energy of solvation -76.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds