Wall clock time and date at job start Tue Mar 31 2020 11:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00264 * 2 1 4 4 C 1.52999 * 109.46965 * 274.99797 * 3 2 1 5 5 C 1.52998 * 109.46957 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.82178 * 305.56728 * 5 4 3 7 7 C 1.54382 * 109.83156 * 184.59035 * 5 4 3 8 8 C 1.55311 * 102.25151 * 219.12935 * 7 5 4 9 9 C 1.54944 * 100.93959 * 34.13221 * 8 7 5 10 10 O 1.43231 * 109.83377 * 66.45339 * 5 4 3 11 11 S 1.65604 * 119.99424 * 179.97438 * 2 1 3 12 12 O 1.42095 * 104.27934 * 333.92679 * 11 2 1 13 13 O 1.42105 * 104.27328 * 206.06976 * 11 2 1 14 14 C 1.81394 * 104.44930 * 90.00288 * 11 2 1 15 15 C 1.53001 * 109.47189 * 186.31603 * 14 11 2 16 16 C 1.50691 * 115.55036 * 294.73646 * 15 14 11 17 17 H 1.08000 * 120.00418 * 99.52850 * 16 15 14 18 18 C 1.37878 * 119.99790 * 279.53113 * 16 15 14 19 19 N 1.31511 * 120.00255 * 5.78481 * 18 16 15 20 20 Si 1.86807 * 119.99935 * 185.78827 * 18 16 15 21 21 H 1.48499 * 109.47233 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46721 * 299.99812 * 20 18 16 23 23 H 1.48498 * 109.47292 * 59.99578 * 20 18 16 24 24 C 1.53004 * 117.51708 * 80.43709 * 15 14 11 25 25 C 1.52996 * 117.49951 * 149.06400 * 15 14 11 26 26 H 1.09001 * 109.47217 * 270.00437 * 1 2 3 27 27 H 1.08998 * 109.46826 * 29.99805 * 1 2 3 28 28 H 1.08993 * 109.47594 * 149.99830 * 1 2 3 29 29 H 1.08997 * 109.47001 * 34.99983 * 3 2 1 30 30 H 1.08995 * 109.46974 * 154.99908 * 3 2 1 31 31 H 1.08997 * 109.47413 * 299.99934 * 4 3 2 32 32 H 1.09002 * 109.46933 * 60.00515 * 4 3 2 33 33 H 1.08993 * 110.84624 * 337.31964 * 7 5 4 34 34 H 1.08994 * 110.84775 * 100.93894 * 7 5 4 35 35 H 1.08996 * 111.12198 * 276.21014 * 8 7 5 36 36 H 1.09000 * 111.16081 * 152.06594 * 8 7 5 37 37 H 1.09002 * 110.30502 * 204.63574 * 9 8 7 38 38 H 1.09002 * 110.39421 * 82.51639 * 9 8 7 39 39 H 1.08997 * 109.47555 * 66.31627 * 14 11 2 40 40 H 1.09005 * 109.47170 * 306.31459 * 14 11 2 41 41 H 0.96999 * 119.99666 * 354.99377 * 19 18 16 42 42 H 1.08991 * 117.49767 * 214.97566 * 24 15 14 43 43 H 1.09004 * 117.49423 * 359.97438 * 24 15 14 44 44 H 1.09006 * 117.50147 * 359.97438 * 25 15 14 45 45 H 1.08998 * 117.50384 * 144.99899 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3438 1.7732 -1.4370 5 6 3.1094 3.0978 -1.4371 6 1 2.6200 3.8076 -0.7701 7 6 3.1618 3.6724 -2.8690 8 6 4.6025 4.2480 -2.9406 9 6 5.3705 3.2286 -2.0621 10 8 4.4585 2.8793 -1.0087 11 16 2.2929 -1.4343 0.0006 12 8 1.3968 -2.3559 0.6063 13 8 3.5394 -1.1190 0.6057 14 6 2.5192 -1.8270 -1.7557 15 6 3.1395 -3.2191 -1.8913 16 6 4.5379 -3.3631 -1.3487 17 1 4.6964 -3.7971 -0.3725 18 6 5.6152 -2.9409 -2.0985 19 7 5.4182 -2.3099 -3.2354 20 14 7.3547 -3.2652 -1.4995 21 1 8.3261 -2.7151 -2.4788 22 1 7.5550 -2.6090 -0.1824 23 1 7.5657 -4.7285 -1.3607 24 6 2.2054 -4.4244 -1.7660 25 6 2.7754 -4.0370 -3.1319 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6503 2.0043 0.5894 30 1 3.1858 1.1176 0.4343 31 1 2.8911 1.0376 -2.0264 32 1 1.3555 1.9243 -1.8713 33 1 3.0218 2.8841 -3.6086 34 1 2.4217 4.4621 -2.9974 35 1 4.6474 5.2489 -2.5114 36 1 4.9770 4.2451 -3.9643 37 1 6.2688 3.6869 -1.6485 38 1 5.6313 2.3453 -2.6452 39 1 3.1798 -1.0891 -2.2109 40 1 1.5528 -1.8093 -2.2595 41 1 4.5185 -2.2054 -3.5824 42 1 2.6024 -5.3215 -1.2910 43 1 1.1488 -4.2257 -1.5865 44 1 2.0936 -3.5835 -3.8515 45 1 3.5473 -4.6793 -3.5558 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451449262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:52 Heat of formation + Delta-G solvation = -103.381639 kcal Electronic energy + Delta-G solvation = -26582.834216 eV Core-core repulsion = 22921.042389 eV Total energy + Delta-G solvation = -3661.791828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.49982 -37.06438 -36.45961 -36.29316 -35.05873 -32.33193 -31.98005 -31.82301 -28.27249 -27.98677 -25.65686 -24.94723 -22.99688 -21.60168 -21.40286 -20.79937 -19.70571 -18.26222 -17.18952 -16.88948 -16.80027 -16.11304 -15.55616 -15.52230 -14.60281 -14.18722 -14.07961 -13.94543 -13.70911 -13.69694 -13.24180 -13.18084 -12.83728 -12.55721 -12.30881 -12.10351 -11.86907 -11.76041 -11.53060 -11.29332 -11.20023 -11.16004 -11.08322 -10.92294 -10.82878 -10.74950 -10.62422 -10.55031 -10.32578 -10.06505 -9.67476 -9.41985 -8.83896 -8.63642 -8.49518 -8.24743 -6.43140 -4.21203 1.01246 3.31108 3.46400 3.51933 3.67675 3.87384 4.43897 4.50791 4.56107 4.63319 4.81645 4.86261 4.95672 4.99057 5.13085 5.16995 5.23234 5.26124 5.38005 5.49427 5.55150 5.59146 5.61342 5.67509 5.73067 5.77247 5.83000 5.85998 5.88252 5.97112 6.07596 6.11132 6.18354 6.28825 6.38309 6.41314 6.54276 6.76165 6.88287 7.04949 7.12831 7.17255 8.06288 8.36424 8.79106 9.57108 10.96338 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.006334 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.175355 B = 4419.357661 C = 5984.185332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.016 6.016 3 C 0.119 3.881 4 C -0.156 4.156 5 C 0.084 3.916 6 H 0.080 0.920 7 C -0.152 4.152 8 C -0.156 4.156 9 C 0.047 3.953 10 O -0.372 6.372 11 S 2.612 3.388 12 O -0.971 6.971 13 O -0.940 6.940 14 C -0.567 4.567 15 C 0.023 3.977 16 C -0.587 4.587 17 H 0.061 0.939 18 C 0.040 3.960 19 N -0.898 5.898 20 Si 1.061 2.939 21 H -0.281 1.281 22 H -0.280 1.280 23 H -0.286 1.286 24 C -0.192 4.192 25 C -0.166 4.166 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.273 0.727 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 12.883 -0.547 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.852 5.852 3 C -0.007 4.007 4 C -0.196 4.196 5 C 0.025 3.975 6 H 0.098 0.902 7 C -0.189 4.189 8 C -0.194 4.194 9 C -0.029 4.029 10 O -0.291 6.291 11 S 2.709 3.291 12 O -0.962 6.962 13 O -0.930 6.930 14 C -0.699 4.699 15 C 0.020 3.980 16 C -0.624 4.624 17 H 0.079 0.921 18 C -0.167 4.167 19 N -0.531 5.531 20 Si 0.888 3.112 21 H -0.207 1.207 22 H -0.206 1.206 23 H -0.212 1.212 24 C -0.229 4.229 25 C -0.206 4.206 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.996 12.659 0.117 14.008 hybrid contribution -1.976 0.012 -0.814 2.137 sum -7.972 12.671 -0.696 14.986 Atomic orbital electron populations 1.21345 0.79492 1.02268 1.01778 1.57878 1.14558 1.22216 1.90503 1.21313 0.98367 0.84876 0.96106 1.22530 1.00507 0.97729 0.98811 1.22661 0.84244 0.95646 0.94907 0.90236 1.23186 0.97480 1.01021 0.97246 1.23259 0.95290 0.99558 1.01286 1.23420 0.93112 0.97320 0.89045 1.88494 1.14741 1.87975 1.37900 1.05069 0.73434 0.72210 0.78401 1.93486 1.65516 1.62397 1.74758 1.93544 1.43160 1.82130 1.74139 1.30187 1.07043 1.09163 1.23545 1.18563 0.95082 0.84057 1.00258 1.21371 0.88680 1.47037 1.05346 0.92068 1.25784 1.04311 0.92018 0.94570 1.70764 1.25953 1.36078 1.20331 0.83666 0.74795 0.76480 0.76238 1.20664 1.20589 1.21202 1.23027 0.97477 1.01004 1.01391 1.22809 1.02336 1.05045 0.90367 0.92784 0.91610 0.91502 0.90773 0.87857 0.90709 0.90686 0.90142 0.90243 0.90642 0.89990 0.89819 0.91462 0.85506 0.88436 0.91544 0.89266 0.90517 0.91303 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 10.22 59.85 0.61 1.84 16 2 N -1.02 -16.52 3.12 -121.76 -0.38 -16.90 16 3 C 0.12 1.77 5.55 -4.04 -0.02 1.75 16 4 C -0.16 -2.08 5.11 -26.73 -0.14 -2.22 16 5 C 0.08 1.02 3.52 -26.01 -0.09 0.93 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.15 -1.52 6.54 -24.78 -0.16 -1.69 16 8 C -0.16 -1.54 7.16 -24.48 -0.18 -1.72 16 9 C 0.05 0.62 7.78 38.18 0.30 0.92 16 10 O -0.37 -5.74 10.63 -35.23 -0.37 -6.12 16 11 S 2.61 56.05 5.11 -107.50 -0.55 55.50 16 12 O -0.97 -22.24 17.09 -57.54 -0.98 -23.22 16 13 O -0.94 -23.73 16.21 -57.54 -0.93 -24.66 16 14 C -0.57 -12.17 5.89 37.16 0.22 -11.95 16 15 C 0.02 0.56 0.85 -155.66 -0.13 0.43 16 16 C -0.59 -16.50 8.18 -34.44 -0.28 -16.78 16 17 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 18 C 0.04 1.13 5.42 -17.82 -0.10 1.03 16 19 N -0.90 -25.73 13.61 55.43 0.75 -24.97 16 20 Si 1.06 25.58 29.91 -169.99 -5.08 20.49 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.19 -4.26 9.96 -26.73 -0.27 -4.53 16 25 C -0.17 -3.75 9.00 -26.73 -0.24 -3.99 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 29 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.10 1.84 6.56 -51.93 -0.34 1.50 16 31 H 0.07 1.17 7.21 -51.93 -0.37 0.80 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.13 2.83 6.68 -51.93 -0.35 2.48 16 40 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 41 H 0.27 7.65 6.07 -40.82 -0.25 7.40 16 42 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -34.31 374.10 -10.05 -44.36 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.66 Total: 5.85 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: -0.48 Total: -35.97 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.38 Total: -41.87 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -2.29 Total: -54.00 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.49 kcal Atomic # 16 Polarization: 56.05 SS G_CDS: -0.55 Total: 55.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.31 -10.05 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451449262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.023 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds