Wall clock time and date at job start Tue Mar 31 2020 11:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00264 * 2 1 4 4 C 1.52999 * 109.46965 * 274.99797 * 3 2 1 5 5 C 1.52998 * 109.46957 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.82178 * 305.56728 * 5 4 3 7 7 C 1.54382 * 109.83156 * 184.59035 * 5 4 3 8 8 C 1.55311 * 102.25151 * 219.12935 * 7 5 4 9 9 C 1.54944 * 100.93959 * 34.13221 * 8 7 5 10 10 O 1.43231 * 109.83377 * 66.45339 * 5 4 3 11 11 S 1.65604 * 119.99424 * 179.97438 * 2 1 3 12 12 O 1.42095 * 104.27934 * 333.92679 * 11 2 1 13 13 O 1.42105 * 104.27328 * 206.06976 * 11 2 1 14 14 C 1.81394 * 104.44930 * 90.00288 * 11 2 1 15 15 C 1.53001 * 109.47189 * 186.31603 * 14 11 2 16 16 C 1.50691 * 115.55036 * 294.73646 * 15 14 11 17 17 H 1.08000 * 120.00418 * 99.52850 * 16 15 14 18 18 C 1.37878 * 119.99790 * 279.53113 * 16 15 14 19 19 N 1.31511 * 120.00255 * 5.78481 * 18 16 15 20 20 Si 1.86807 * 119.99935 * 185.78827 * 18 16 15 21 21 H 1.48499 * 109.47233 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46721 * 299.99812 * 20 18 16 23 23 H 1.48498 * 109.47292 * 59.99578 * 20 18 16 24 24 C 1.53004 * 117.51708 * 80.43709 * 15 14 11 25 25 C 1.52996 * 117.49951 * 149.06400 * 15 14 11 26 26 H 1.09001 * 109.47217 * 270.00437 * 1 2 3 27 27 H 1.08998 * 109.46826 * 29.99805 * 1 2 3 28 28 H 1.08993 * 109.47594 * 149.99830 * 1 2 3 29 29 H 1.08997 * 109.47001 * 34.99983 * 3 2 1 30 30 H 1.08995 * 109.46974 * 154.99908 * 3 2 1 31 31 H 1.08997 * 109.47413 * 299.99934 * 4 3 2 32 32 H 1.09002 * 109.46933 * 60.00515 * 4 3 2 33 33 H 1.08993 * 110.84624 * 337.31964 * 7 5 4 34 34 H 1.08994 * 110.84775 * 100.93894 * 7 5 4 35 35 H 1.08996 * 111.12198 * 276.21014 * 8 7 5 36 36 H 1.09000 * 111.16081 * 152.06594 * 8 7 5 37 37 H 1.09002 * 110.30502 * 204.63574 * 9 8 7 38 38 H 1.09002 * 110.39421 * 82.51639 * 9 8 7 39 39 H 1.08997 * 109.47555 * 66.31627 * 14 11 2 40 40 H 1.09005 * 109.47170 * 306.31459 * 14 11 2 41 41 H 0.96999 * 119.99666 * 354.99377 * 19 18 16 42 42 H 1.08991 * 117.49767 * 214.97566 * 24 15 14 43 43 H 1.09004 * 117.49423 * 359.97438 * 24 15 14 44 44 H 1.09006 * 117.50147 * 359.97438 * 25 15 14 45 45 H 1.08998 * 117.50384 * 144.99899 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3438 1.7732 -1.4370 5 6 3.1094 3.0978 -1.4371 6 1 2.6200 3.8076 -0.7701 7 6 3.1618 3.6724 -2.8690 8 6 4.6025 4.2480 -2.9406 9 6 5.3705 3.2286 -2.0621 10 8 4.4585 2.8793 -1.0087 11 16 2.2929 -1.4343 0.0006 12 8 1.3968 -2.3559 0.6063 13 8 3.5394 -1.1190 0.6057 14 6 2.5192 -1.8270 -1.7557 15 6 3.1395 -3.2191 -1.8913 16 6 4.5379 -3.3631 -1.3487 17 1 4.6964 -3.7971 -0.3725 18 6 5.6152 -2.9409 -2.0985 19 7 5.4182 -2.3099 -3.2354 20 14 7.3547 -3.2652 -1.4995 21 1 8.3261 -2.7151 -2.4788 22 1 7.5550 -2.6090 -0.1824 23 1 7.5657 -4.7285 -1.3607 24 6 2.2054 -4.4244 -1.7660 25 6 2.7754 -4.0370 -3.1319 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6503 2.0043 0.5894 30 1 3.1858 1.1176 0.4343 31 1 2.8911 1.0376 -2.0264 32 1 1.3555 1.9243 -1.8713 33 1 3.0218 2.8841 -3.6086 34 1 2.4217 4.4621 -2.9974 35 1 4.6474 5.2489 -2.5114 36 1 4.9770 4.2451 -3.9643 37 1 6.2688 3.6869 -1.6485 38 1 5.6313 2.3453 -2.6452 39 1 3.1798 -1.0891 -2.2109 40 1 1.5528 -1.8093 -2.2595 41 1 4.5185 -2.2054 -3.5824 42 1 2.6024 -5.3215 -1.2910 43 1 1.1488 -4.2257 -1.5865 44 1 2.0936 -3.5835 -3.8515 45 1 3.5473 -4.6793 -3.5558 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451449262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:51 Heat of formation + Delta-G solvation = -127.034962 kcal Electronic energy + Delta-G solvation = -26583.859901 eV Core-core repulsion = 22921.042389 eV Total energy + Delta-G solvation = -3662.817513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47279 -38.92712 -38.12039 -37.63183 -36.84565 -34.08831 -33.34729 -32.77198 -30.00819 -28.99602 -27.11102 -26.68946 -24.14163 -23.19401 -22.48616 -21.90454 -21.50960 -19.83980 -18.83657 -18.62850 -17.87393 -17.35408 -17.20357 -16.79729 -16.00702 -15.72440 -15.67896 -15.35033 -15.23235 -14.89326 -14.76343 -14.57350 -14.18406 -13.89366 -13.69841 -13.43129 -13.22925 -13.13557 -13.01217 -13.00121 -12.70555 -12.64844 -12.45495 -12.39677 -12.17011 -12.16389 -11.98419 -11.92543 -11.74895 -11.67922 -11.45622 -10.62895 -10.58181 -10.47914 -10.32682 -9.86691 -8.63499 -6.40783 -0.64096 1.48097 1.56072 1.74521 1.84763 2.51324 2.87274 2.95471 3.09173 3.15061 3.28313 3.56896 3.61916 3.80625 3.93357 4.00000 4.07266 4.14909 4.23538 4.28176 4.30931 4.36638 4.43418 4.55576 4.57446 4.67432 4.76237 4.77730 4.78310 4.83438 4.90263 4.92212 4.94140 4.97482 5.01998 5.14128 5.21548 5.25554 5.36371 5.38206 5.68155 5.99366 6.13440 6.16546 6.62504 7.40841 8.77862 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.006334 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.175355 B = 4419.357661 C = 5984.185332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.006 6.006 3 C 0.115 3.885 4 C -0.153 4.153 5 C 0.074 3.926 6 H 0.105 0.895 7 C -0.147 4.147 8 C -0.146 4.146 9 C 0.036 3.964 10 O -0.407 6.407 11 S 2.619 3.381 12 O -0.990 6.990 13 O -0.991 6.991 14 C -0.559 4.559 15 C -0.015 4.015 16 C -0.603 4.603 17 H 0.037 0.963 18 C -0.001 4.001 19 N -0.914 5.914 20 Si 1.089 2.911 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.181 4.181 25 C -0.156 4.156 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.037 0.963 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.270 0.730 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 14.779 -1.412 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.845 5.845 3 C -0.010 4.010 4 C -0.192 4.192 5 C 0.017 3.983 6 H 0.123 0.877 7 C -0.184 4.184 8 C -0.183 4.183 9 C -0.041 4.041 10 O -0.328 6.328 11 S 2.716 3.284 12 O -0.981 6.981 13 O -0.982 6.982 14 C -0.691 4.691 15 C -0.017 4.017 16 C -0.640 4.640 17 H 0.055 0.945 18 C -0.204 4.204 19 N -0.548 5.548 20 Si 0.912 3.088 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.218 4.218 25 C -0.195 4.195 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.056 0.944 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.387 14.533 -0.751 16.796 hybrid contribution -1.314 -0.561 -0.492 1.511 sum -9.700 13.972 -1.244 17.054 Atomic orbital electron populations 1.21749 0.76618 1.04599 1.03122 1.57462 1.16139 1.20688 1.90230 1.21460 0.96966 0.84790 0.97775 1.22538 1.02076 0.97480 0.97114 1.22949 0.82838 0.95572 0.96973 0.87682 1.23203 0.98323 1.01550 0.95372 1.23241 0.94571 0.99313 1.01209 1.23528 0.93978 0.97299 0.89256 1.88466 1.16623 1.88452 1.39219 1.04512 0.72626 0.73072 0.78200 1.93446 1.65475 1.63918 1.75225 1.93479 1.46055 1.83199 1.75420 1.30028 1.08397 1.06743 1.23974 1.18666 0.94436 0.86310 1.02316 1.21557 0.91205 1.46776 1.04454 0.94497 1.26801 1.07246 0.91774 0.94593 1.70831 1.25849 1.37229 1.20915 0.83314 0.72107 0.77588 0.75783 1.19755 1.21005 1.19091 1.23095 0.98358 0.99554 1.00837 1.22781 1.02158 1.03960 0.90584 0.92062 0.87368 0.91112 0.86956 0.91799 0.94070 0.87175 0.91114 0.86989 0.88637 0.88897 0.88979 0.94441 0.86957 0.84573 0.91897 0.89896 0.87892 0.88409 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.81 10.22 127.77 1.31 3.12 16 2 N -1.01 -31.19 3.12 -539.14 -1.68 -32.87 16 3 C 0.11 3.29 5.55 86.38 0.48 3.77 16 4 C -0.15 -3.82 5.11 30.59 0.16 -3.66 16 5 C 0.07 1.68 3.52 31.06 0.11 1.79 16 6 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 7 C -0.15 -2.56 6.54 31.86 0.21 -2.35 16 8 C -0.15 -2.60 7.16 32.05 0.23 -2.37 16 9 C 0.04 0.95 7.78 72.65 0.56 1.51 16 10 O -0.41 -12.78 10.63 -148.98 -1.58 -14.36 16 11 S 2.62 113.21 5.11 -56.49 -0.29 112.92 16 12 O -0.99 -45.04 17.09 -127.65 -2.18 -47.22 16 13 O -0.99 -52.49 16.21 -127.65 -2.07 -54.56 16 14 C -0.56 -23.85 5.89 71.98 0.42 -23.43 16 15 C -0.02 -0.75 0.85 -52.93 -0.04 -0.79 16 16 C -0.60 -34.94 8.18 25.60 0.21 -34.73 16 17 H 0.04 2.24 7.82 -2.91 -0.02 2.22 16 18 C 0.00 -0.08 5.42 84.66 0.46 0.38 16 19 N -0.91 -53.53 13.61 21.45 0.29 -53.23 16 20 Si 1.09 52.76 29.91 68.60 2.05 54.81 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.18 -7.88 9.96 30.59 0.30 -7.57 16 25 C -0.16 -6.88 9.00 30.59 0.28 -6.60 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.11 1.47 8.07 -2.39 -0.02 1.45 16 28 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 29 H 0.11 2.34 8.11 -2.39 -0.02 2.32 16 30 H 0.06 2.36 6.56 -2.39 -0.02 2.35 16 31 H 0.04 1.30 7.21 -2.39 -0.02 1.29 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.37 7.85 -2.39 -0.02 1.35 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 5.14 6.68 -2.39 -0.02 5.13 16 40 H 0.14 4.57 8.09 -2.39 -0.02 4.55 16 41 H 0.27 15.42 6.07 -92.71 -0.56 14.86 16 42 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 43 H 0.10 3.90 8.14 -2.38 -0.02 3.88 16 44 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 45 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -78.39 374.10 0.38 -78.01 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 1.16 Total: 27.45 kcal Atomic # 6 Polarization: -75.62 SS G_CDS: 4.68 Total: -70.94 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -1.39 Total: -86.10 kcal Atomic # 8 Polarization: -110.32 SS G_CDS: -5.83 Total: -116.15 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Atomic # 16 Polarization: 113.21 SS G_CDS: -0.29 Total: 112.92 kcal Total: -78.39 0.38 -78.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451449262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.022 kcal (2) G-P(sol) polarization free energy of solvation -78.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds