Wall clock time and date at job start Tue Mar 31 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 114.00103 * 2 1 4 4 C 1.52993 * 109.47142 * 184.77166 * 3 2 1 5 5 C 1.53003 * 109.46805 * 180.02562 * 4 3 2 6 6 N 1.46501 * 112.84789 * 300.75602 * 5 4 3 7 7 S 1.65596 * 119.99892 * 282.10100 * 6 5 4 8 8 O 1.42092 * 104.28246 * 305.47808 * 7 6 5 9 9 O 1.42103 * 104.27529 * 177.62040 * 7 6 5 10 10 C 1.81402 * 104.45125 * 61.55291 * 7 6 5 11 11 C 1.53000 * 109.47242 * 169.07492 * 10 7 6 12 12 C 1.50691 * 115.56240 * 40.11292 * 11 10 7 13 13 H 1.08003 * 120.00735 * 265.96199 * 12 11 10 14 14 C 1.37876 * 120.00108 * 85.96351 * 12 11 10 15 15 N 1.31519 * 119.99927 * 3.22720 * 14 12 11 16 16 Si 1.86798 * 120.00617 * 183.22538 * 14 12 11 17 17 H 1.48502 * 109.47150 * 64.99338 * 16 14 12 18 18 H 1.48492 * 109.47462 * 184.99988 * 16 14 12 19 19 H 1.48505 * 109.46950 * 305.00141 * 16 14 12 20 20 C 1.53003 * 117.49778 * 254.42547 * 11 10 7 21 21 C 1.52995 * 60.00079 * 252.51222 * 20 11 10 22 22 C 1.53773 * 113.69350 * 72.02820 * 5 4 3 23 23 C 1.53781 * 87.08468 * 139.98858 * 22 5 4 24 24 C 1.53780 * 87.08000 * 334.57118 * 23 22 5 25 25 H 1.08991 * 109.46812 * 304.80185 * 1 2 3 26 26 H 1.09003 * 109.46578 * 64.80194 * 1 2 3 27 27 H 1.09003 * 109.46734 * 184.79605 * 1 2 3 28 28 H 1.08998 * 109.46733 * 64.76574 * 3 2 1 29 29 H 1.09005 * 109.46988 * 304.77339 * 3 2 1 30 30 H 1.09002 * 109.47533 * 59.99622 * 4 3 2 31 31 H 1.09001 * 109.46891 * 299.99145 * 4 3 2 32 32 H 0.97005 * 119.99725 * 102.10599 * 6 5 4 33 33 H 1.09000 * 109.47009 * 49.07065 * 10 7 6 34 34 H 1.09004 * 109.46974 * 289.07474 * 10 7 6 35 35 H 0.96994 * 120.00115 * 174.99550 * 15 14 12 36 36 H 1.09003 * 117.49773 * 0.02562 * 20 11 10 37 37 H 1.08996 * 117.49833 * 145.01664 * 20 11 10 38 38 H 1.09005 * 117.49797 * 252.51549 * 21 20 11 39 39 H 1.09003 * 117.51710 * 107.48024 * 21 20 11 40 40 H 1.08998 * 113.61785 * 254.53810 * 22 5 4 41 41 H 1.09002 * 113.62045 * 25.44194 * 22 5 4 42 42 H 1.08991 * 113.61860 * 220.01538 * 23 22 5 43 43 H 1.09010 * 113.61056 * 89.11331 * 23 22 5 44 44 H 1.09009 * 113.60925 * 270.88272 * 24 23 22 45 45 H 1.09001 * 113.61812 * 139.98312 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5309 1.1867 -0.1200 5 6 4.1532 2.5844 -0.1193 6 7 3.6679 3.4237 -1.2177 7 16 4.2616 3.2087 -2.7486 8 8 5.6701 3.3192 -2.5971 9 8 3.5347 4.1386 -3.5400 10 6 3.7990 1.5083 -3.1789 11 6 4.0504 1.2730 -4.6696 12 6 5.3135 1.8832 -5.2202 13 1 5.2857 2.8604 -5.6793 14 6 6.5048 1.1940 -5.1381 15 7 6.5279 -0.0217 -4.6368 16 14 8.0860 1.9867 -5.7386 17 1 8.4022 3.1644 -4.8911 18 1 9.1958 1.0037 -5.6541 19 1 7.9169 2.4225 -7.1482 20 6 2.8309 1.2204 -5.5920 21 6 3.5952 -0.0628 -5.2606 22 6 4.1107 3.2791 1.2519 23 6 5.5279 3.7930 0.9477 24 6 5.6847 2.5768 0.0197 25 1 -0.3632 0.5865 0.8438 26 1 -0.3632 0.4376 -0.9299 27 1 -0.3633 -1.0241 0.0859 28 1 1.7578 1.8155 0.9296 29 1 1.6226 1.8758 -0.8442 30 1 3.7833 0.6765 -1.0496 31 1 3.9185 0.6165 0.7243 32 1 2.9989 4.1053 -1.0482 33 1 2.7428 1.3525 -2.9594 34 1 4.3983 0.8098 -2.5947 35 1 7.3514 -0.5342 -4.6453 36 1 1.8494 1.3539 -5.1368 37 1 2.9421 1.6272 -6.5971 38 1 4.2094 -0.5003 -6.0477 39 1 3.1170 -0.7742 -4.5872 40 1 3.3641 4.0705 1.3176 41 1 4.0688 2.5855 2.0917 42 1 6.1940 3.7731 1.8101 43 1 5.5426 4.7479 0.4222 44 1 6.0730 1.6911 0.5227 45 1 6.2087 2.8011 -0.9093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451483012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:23 Heat of formation + Delta-G solvation = -70.971974 kcal Electronic energy + Delta-G solvation = -27063.014271 eV Core-core repulsion = 23402.627832 eV Total energy + Delta-G solvation = -3660.386439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.74560 -37.67972 -36.70230 -36.09986 -34.96563 -32.71109 -32.01673 -31.09913 -28.20988 -26.72586 -25.76331 -25.41928 -24.31914 -21.64831 -21.12836 -19.82200 -19.36941 -18.39440 -16.99173 -16.56243 -16.47687 -15.96925 -15.55770 -15.21696 -15.04044 -14.71783 -14.68981 -14.32981 -13.84727 -13.61535 -13.17820 -13.04059 -12.55711 -12.30166 -12.25728 -11.80127 -11.70369 -11.51972 -11.32504 -11.20759 -11.12994 -11.03721 -10.91539 -10.82621 -10.69192 -10.52280 -10.45555 -10.30778 -10.02811 -9.70240 -9.64815 -9.56199 -9.13479 -8.95258 -8.48006 -8.07112 -6.12963 -4.30566 1.16949 3.36112 3.39178 3.48141 3.50828 3.68312 4.40672 4.41817 4.62636 4.73386 4.88883 4.98179 5.05628 5.08794 5.12599 5.17672 5.24022 5.29909 5.37148 5.39568 5.53996 5.61003 5.66687 5.72847 5.83005 5.87912 5.95116 5.99642 6.04791 6.19185 6.34840 6.38368 6.41648 6.59456 6.67319 6.74398 6.80155 7.02018 7.13376 7.22748 7.32740 7.49300 7.79491 8.21549 8.79541 9.47076 10.93025 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.006267 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.153995 B = 4466.761656 C = 5500.334791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.140 4.140 5 C 0.155 3.845 6 N -1.116 6.116 7 S 2.624 3.376 8 O -0.942 6.942 9 O -0.974 6.974 10 C -0.560 4.560 11 C 0.048 3.952 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.096 3.904 15 N -0.865 5.865 16 Si 0.887 3.113 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.206 4.206 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.179 4.179 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 1.984 12.892 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.179 4.179 5 C 0.065 3.935 6 N -0.871 5.871 7 S 2.722 3.278 8 O -0.932 6.932 9 O -0.965 6.965 10 C -0.692 4.692 11 C 0.046 3.954 12 C -0.581 4.581 13 H 0.086 0.914 14 C -0.111 4.111 15 N -0.499 5.499 16 Si 0.713 3.287 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.243 4.243 21 C -0.175 4.175 22 C -0.172 4.172 23 C -0.171 4.171 24 C -0.217 4.217 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.242 0.758 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.448 2.232 12.496 14.717 hybrid contribution -0.169 0.067 0.009 0.182 sum -7.616 2.299 12.505 14.821 Atomic orbital electron populations 1.22729 0.81363 1.02543 0.99920 1.87896 1.19430 1.28226 1.95407 1.22474 0.94082 0.84476 1.00153 1.22218 0.93620 0.96746 1.05314 1.20945 0.95319 0.89017 0.88191 1.55843 1.58120 1.47625 1.25482 1.04650 0.74616 0.77589 0.70969 1.93391 1.30012 1.86128 1.83657 1.93482 1.74442 1.60718 1.67815 1.30187 1.07991 1.22483 1.08524 1.18162 0.93034 0.99403 0.84783 1.20575 0.90413 1.04746 1.42397 0.91353 1.24913 0.98923 0.94467 0.92844 1.69976 1.28072 1.09543 1.42273 0.86703 0.82351 0.80137 0.79477 1.18783 1.21003 1.19960 1.23120 0.95141 1.04688 1.01359 1.22486 1.01784 0.90189 1.03062 1.23207 0.98290 1.00008 0.95688 1.22718 0.96098 0.98862 0.99431 1.23989 0.94267 0.98774 1.04657 0.94324 0.94009 0.89771 0.93326 0.93129 0.89191 0.89571 0.75816 0.88403 0.85215 0.92525 0.91510 0.89780 0.89346 0.91717 0.91239 0.89163 0.91544 0.90034 0.89242 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.30 10.70 -35.23 -0.38 -5.67 16 3 C 0.06 0.80 5.72 37.15 0.21 1.01 16 4 C -0.14 -1.87 4.77 -26.73 -0.13 -2.00 16 5 C 0.16 2.10 0.83 -131.01 -0.11 1.99 16 6 N -1.12 -16.80 4.91 1.19 0.01 -16.79 16 7 S 2.62 54.48 4.47 -107.50 -0.48 54.00 16 8 O -0.94 -22.28 14.14 -57.54 -0.81 -23.09 16 9 O -0.97 -22.65 18.08 -57.54 -1.04 -23.69 16 10 C -0.56 -11.74 4.63 37.16 0.17 -11.57 16 11 C 0.05 1.18 1.73 -155.66 -0.27 0.91 16 12 C -0.54 -14.93 7.14 -34.45 -0.25 -15.17 16 13 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16 14 C 0.10 2.63 5.42 -17.82 -0.10 2.54 16 15 N -0.86 -23.79 12.63 55.43 0.70 -23.09 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.26 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.21 -4.55 9.88 -26.73 -0.26 -4.82 16 21 C -0.14 -3.16 9.15 -26.73 -0.24 -3.40 16 22 C -0.13 -1.41 7.01 -25.92 -0.18 -1.59 16 23 C -0.13 -1.64 7.99 -25.92 -0.21 -1.84 16 24 C -0.18 -2.64 7.13 -25.92 -0.18 -2.83 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.50 7.85 -51.93 -0.41 0.10 16 29 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 30 H 0.09 1.39 4.69 -51.93 -0.24 1.15 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 5.13 8.87 -34.47 -0.31 4.82 16 33 H 0.10 1.77 7.95 -51.92 -0.41 1.35 16 34 H 0.13 2.75 6.27 -51.92 -0.33 2.42 16 35 H 0.27 6.97 8.32 -40.82 -0.34 6.64 16 36 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 37 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.09 2.18 8.14 -51.93 -0.42 1.75 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 44 H 0.09 1.17 8.10 -51.92 -0.42 0.75 16 45 H 0.13 2.41 4.72 -51.93 -0.25 2.17 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -32.33 368.15 -9.29 -41.62 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.38 Total: 9.75 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: -0.43 Total: -35.35 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.71 Total: -39.88 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -2.23 Total: -52.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 54.48 SS G_CDS: -0.48 Total: 54.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.33 -9.29 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451483012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.349 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds