Wall clock time and date at job start Tue Mar 31 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 114.00103 * 2 1 4 4 C 1.52993 * 109.47142 * 184.77166 * 3 2 1 5 5 C 1.53003 * 109.46805 * 180.02562 * 4 3 2 6 6 N 1.46501 * 112.84789 * 300.75602 * 5 4 3 7 7 S 1.65596 * 119.99892 * 282.10100 * 6 5 4 8 8 O 1.42092 * 104.28246 * 305.47808 * 7 6 5 9 9 O 1.42103 * 104.27529 * 177.62040 * 7 6 5 10 10 C 1.81402 * 104.45125 * 61.55291 * 7 6 5 11 11 C 1.53000 * 109.47242 * 169.07492 * 10 7 6 12 12 C 1.50691 * 115.56240 * 40.11292 * 11 10 7 13 13 H 1.08003 * 120.00735 * 265.96199 * 12 11 10 14 14 C 1.37876 * 120.00108 * 85.96351 * 12 11 10 15 15 N 1.31519 * 119.99927 * 3.22720 * 14 12 11 16 16 Si 1.86798 * 120.00617 * 183.22538 * 14 12 11 17 17 H 1.48502 * 109.47150 * 64.99338 * 16 14 12 18 18 H 1.48492 * 109.47462 * 184.99988 * 16 14 12 19 19 H 1.48505 * 109.46950 * 305.00141 * 16 14 12 20 20 C 1.53003 * 117.49778 * 254.42547 * 11 10 7 21 21 C 1.52995 * 60.00079 * 252.51222 * 20 11 10 22 22 C 1.53773 * 113.69350 * 72.02820 * 5 4 3 23 23 C 1.53781 * 87.08468 * 139.98858 * 22 5 4 24 24 C 1.53780 * 87.08000 * 334.57118 * 23 22 5 25 25 H 1.08991 * 109.46812 * 304.80185 * 1 2 3 26 26 H 1.09003 * 109.46578 * 64.80194 * 1 2 3 27 27 H 1.09003 * 109.46734 * 184.79605 * 1 2 3 28 28 H 1.08998 * 109.46733 * 64.76574 * 3 2 1 29 29 H 1.09005 * 109.46988 * 304.77339 * 3 2 1 30 30 H 1.09002 * 109.47533 * 59.99622 * 4 3 2 31 31 H 1.09001 * 109.46891 * 299.99145 * 4 3 2 32 32 H 0.97005 * 119.99725 * 102.10599 * 6 5 4 33 33 H 1.09000 * 109.47009 * 49.07065 * 10 7 6 34 34 H 1.09004 * 109.46974 * 289.07474 * 10 7 6 35 35 H 0.96994 * 120.00115 * 174.99550 * 15 14 12 36 36 H 1.09003 * 117.49773 * 0.02562 * 20 11 10 37 37 H 1.08996 * 117.49833 * 145.01664 * 20 11 10 38 38 H 1.09005 * 117.49797 * 252.51549 * 21 20 11 39 39 H 1.09003 * 117.51710 * 107.48024 * 21 20 11 40 40 H 1.08998 * 113.61785 * 254.53810 * 22 5 4 41 41 H 1.09002 * 113.62045 * 25.44194 * 22 5 4 42 42 H 1.08991 * 113.61860 * 220.01538 * 23 22 5 43 43 H 1.09010 * 113.61056 * 89.11331 * 23 22 5 44 44 H 1.09009 * 113.60925 * 270.88272 * 24 23 22 45 45 H 1.09001 * 113.61812 * 139.98312 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5309 1.1867 -0.1200 5 6 4.1532 2.5844 -0.1193 6 7 3.6679 3.4237 -1.2177 7 16 4.2616 3.2087 -2.7486 8 8 5.6701 3.3192 -2.5971 9 8 3.5347 4.1386 -3.5400 10 6 3.7990 1.5083 -3.1789 11 6 4.0504 1.2730 -4.6696 12 6 5.3135 1.8832 -5.2202 13 1 5.2857 2.8604 -5.6793 14 6 6.5048 1.1940 -5.1381 15 7 6.5279 -0.0217 -4.6368 16 14 8.0860 1.9867 -5.7386 17 1 8.4022 3.1644 -4.8911 18 1 9.1958 1.0037 -5.6541 19 1 7.9169 2.4225 -7.1482 20 6 2.8309 1.2204 -5.5920 21 6 3.5952 -0.0628 -5.2606 22 6 4.1107 3.2791 1.2519 23 6 5.5279 3.7930 0.9477 24 6 5.6847 2.5768 0.0197 25 1 -0.3632 0.5865 0.8438 26 1 -0.3632 0.4376 -0.9299 27 1 -0.3633 -1.0241 0.0859 28 1 1.7578 1.8155 0.9296 29 1 1.6226 1.8758 -0.8442 30 1 3.7833 0.6765 -1.0496 31 1 3.9185 0.6165 0.7243 32 1 2.9989 4.1053 -1.0482 33 1 2.7428 1.3525 -2.9594 34 1 4.3983 0.8098 -2.5947 35 1 7.3514 -0.5342 -4.6453 36 1 1.8494 1.3539 -5.1368 37 1 2.9421 1.6272 -6.5971 38 1 4.2094 -0.5003 -6.0477 39 1 3.1170 -0.7742 -4.5872 40 1 3.3641 4.0705 1.3176 41 1 4.0688 2.5855 2.0917 42 1 6.1940 3.7731 1.8101 43 1 5.5426 4.7479 0.4222 44 1 6.0730 1.6911 0.5227 45 1 6.2087 2.8011 -0.9093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451483012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:22 Heat of formation + Delta-G solvation = -93.712674 kcal Electronic energy + Delta-G solvation = -27064.000382 eV Core-core repulsion = 23402.627832 eV Total energy + Delta-G solvation = -3661.372550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.79331 -38.64556 -38.49893 -37.82739 -36.70843 -34.12576 -33.82681 -32.19105 -29.88766 -27.59184 -27.50467 -26.68536 -25.26566 -22.95773 -22.66534 -21.46658 -20.78739 -19.89282 -18.45907 -18.36479 -17.50935 -16.96960 -16.91908 -16.70411 -16.64698 -16.23533 -15.82239 -15.72644 -15.40225 -14.92961 -14.72464 -14.27104 -13.94870 -13.72021 -13.55146 -13.40637 -13.06643 -12.97125 -12.89246 -12.81297 -12.67117 -12.47933 -12.43615 -12.23467 -12.07767 -11.95053 -11.92864 -11.69248 -11.53639 -11.46377 -10.94892 -10.80177 -10.54412 -10.49783 -10.28892 -9.89710 -8.22248 -6.42935 -0.45286 1.34731 1.41014 1.47208 2.06944 2.38188 2.81108 2.97808 3.07211 3.32061 3.48609 3.51781 3.72275 3.92844 4.00425 4.05846 4.11502 4.25345 4.29103 4.39574 4.56588 4.57366 4.59017 4.60208 4.63888 4.80427 4.82357 4.88415 4.89677 4.93159 4.97576 5.02958 5.11411 5.13656 5.26417 5.36029 5.40487 5.54030 5.59146 5.63647 5.67766 6.20149 6.22371 6.29560 6.67842 7.35360 8.83260 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.006267 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.153995 B = 4466.761656 C = 5500.334791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.063 3.937 4 C -0.140 4.140 5 C 0.148 3.852 6 N -1.097 6.097 7 S 2.634 3.366 8 O -0.979 6.979 9 O -1.005 7.005 10 C -0.551 4.551 11 C 0.015 3.985 12 C -0.559 4.559 13 H 0.048 0.952 14 C 0.060 3.940 15 N -0.881 5.881 16 Si 0.922 3.078 17 H -0.277 1.277 18 H -0.269 1.269 19 H -0.266 1.266 20 C -0.193 4.193 21 C -0.134 4.134 22 C -0.111 4.111 23 C -0.134 4.134 24 C -0.197 4.197 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.423 0.577 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.267 0.733 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 1.993 15.168 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.337 6.337 3 C -0.013 4.013 4 C -0.179 4.179 5 C 0.059 3.941 6 N -0.857 5.857 7 S 2.731 3.269 8 O -0.968 6.968 9 O -0.996 6.996 10 C -0.684 4.684 11 C 0.013 3.987 12 C -0.596 4.596 13 H 0.066 0.934 14 C -0.145 4.145 15 N -0.515 5.515 16 Si 0.747 3.253 17 H -0.202 1.202 18 H -0.194 1.194 19 H -0.191 1.191 20 C -0.230 4.230 21 C -0.173 4.173 22 C -0.149 4.149 23 C -0.171 4.171 24 C -0.236 4.236 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.260 0.740 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.121 0.879 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.094 2.245 14.749 17.472 hybrid contribution 0.321 0.056 -0.666 0.741 sum -8.772 2.302 14.084 16.751 Atomic orbital electron populations 1.22927 0.79762 1.03735 1.00816 1.87854 1.21284 1.28925 1.95621 1.22518 0.92973 0.84367 1.01418 1.22196 0.94899 0.96239 1.04590 1.21164 0.94354 0.89427 0.89168 1.55262 1.58239 1.48240 1.23922 1.04046 0.73824 0.77120 0.71867 1.93381 1.32380 1.86496 1.84567 1.93429 1.74767 1.61676 1.69688 1.30061 1.09730 1.22479 1.06095 1.18321 0.93079 1.00418 0.86904 1.20714 0.92279 1.04102 1.42527 0.93420 1.25414 1.00840 0.94968 0.93295 1.70012 1.28569 1.10000 1.42932 0.86157 0.80564 0.79358 0.79239 1.20218 1.19367 1.19069 1.23195 0.95726 1.03167 1.00865 1.22390 1.01824 0.90392 1.02691 1.23186 0.97329 1.00392 0.94028 1.22724 0.98040 0.97044 0.99286 1.24057 0.95056 1.00810 1.03675 0.92373 0.93957 0.88766 0.90638 0.93427 0.91873 0.88071 0.74009 0.85519 0.85774 0.92355 0.88446 0.90242 0.91531 0.89993 0.89176 0.86448 0.89561 0.91346 0.87928 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.23 10.70 -148.98 -1.59 -11.83 16 3 C 0.06 1.37 5.72 71.98 0.41 1.78 16 4 C -0.14 -3.45 4.77 30.59 0.15 -3.30 16 5 C 0.15 3.70 0.83 4.13 0.00 3.70 16 6 N -1.10 -31.62 4.91 -150.14 -0.74 -32.36 16 7 S 2.63 110.37 4.47 -56.49 -0.25 110.11 16 8 O -0.98 -48.00 14.14 -127.65 -1.80 -49.81 16 9 O -1.01 -47.14 18.08 -127.65 -2.31 -49.45 16 10 C -0.55 -23.03 4.63 71.98 0.33 -22.70 16 11 C 0.01 0.72 1.73 -52.93 -0.09 0.63 16 12 C -0.56 -31.46 7.14 25.60 0.18 -31.27 16 13 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 14 C 0.06 3.37 5.42 84.65 0.46 3.83 16 15 N -0.88 -49.27 12.63 21.45 0.27 -48.99 16 16 Si 0.92 45.32 29.54 68.60 2.03 47.35 16 17 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 20 C -0.19 -8.34 9.88 30.59 0.30 -8.04 16 21 C -0.13 -6.18 9.15 30.59 0.28 -5.90 16 22 C -0.11 -1.91 7.01 31.12 0.22 -1.69 16 23 C -0.13 -2.98 7.99 31.12 0.25 -2.74 16 24 C -0.20 -5.71 7.13 31.12 0.22 -5.49 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.22 7.85 -2.39 -0.02 1.20 16 29 H 0.05 1.03 7.75 -2.38 -0.02 1.01 16 30 H 0.06 1.90 4.69 -2.39 -0.01 1.89 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.42 9.74 8.87 -96.74 -0.86 8.88 16 33 H 0.13 4.40 7.95 -2.39 -0.02 4.38 16 34 H 0.12 5.33 6.27 -2.39 -0.01 5.32 16 35 H 0.27 14.24 8.32 -92.71 -0.77 13.47 16 36 H 0.10 3.59 8.09 -2.39 -0.02 3.57 16 37 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 38 H 0.07 3.33 8.14 -2.38 -0.02 3.31 16 39 H 0.08 3.43 8.14 -2.39 -0.02 3.42 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.10 2.60 8.10 -2.38 -0.02 2.58 16 45 H 0.09 3.38 4.72 -2.39 -0.01 3.37 16 Total: -1.00 -71.70 368.15 -0.31 -72.01 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.12 Total: 32.49 kcal Atomic # 6 Polarization: -73.49 SS G_CDS: 3.96 Total: -69.53 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -0.47 Total: -81.35 kcal Atomic # 8 Polarization: -105.38 SS G_CDS: -5.71 Total: -111.09 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 110.37 SS G_CDS: -0.25 Total: 110.11 kcal Total: -71.70 -0.31 -72.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451483012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.699 kcal (2) G-P(sol) polarization free energy of solvation -71.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds