Wall clock time and date at job start Tue Mar 31 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99948 * 2 1 4 4 C 1.52997 * 109.47577 * 180.02562 * 3 2 1 5 5 C 1.53002 * 112.84457 * 293.42211 * 4 3 2 6 6 N 1.46503 * 109.47273 * 304.52871 * 5 4 3 7 7 S 1.65598 * 119.99996 * 152.37413 * 6 5 4 8 8 O 1.42105 * 104.27817 * 308.93341 * 7 6 5 9 9 O 1.42095 * 104.27873 * 181.07524 * 7 6 5 10 10 C 1.81401 * 104.44921 * 65.00271 * 7 6 5 11 11 C 1.53002 * 109.47120 * 185.55295 * 10 7 6 12 12 C 1.50692 * 115.55362 * 305.79397 * 11 10 7 13 13 H 1.08004 * 119.99828 * 95.25006 * 12 11 10 14 14 C 1.37877 * 120.00112 * 274.98482 * 12 11 10 15 15 N 1.31511 * 119.99945 * 355.38625 * 14 12 11 16 16 Si 1.86799 * 120.00004 * 175.39918 * 14 12 11 17 17 H 1.48497 * 109.47315 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47672 * 119.99479 * 16 14 12 19 19 H 1.48503 * 109.46958 * 239.99376 * 16 14 12 20 20 C 1.53002 * 117.49580 * 91.46539 * 11 10 7 21 21 C 1.53003 * 117.49533 * 160.12362 * 11 10 7 22 22 C 1.53779 * 113.61773 * 64.61366 * 4 3 2 23 23 C 1.53958 * 87.01483 * 89.23100 * 22 4 3 24 24 C 1.53772 * 87.11246 * 25.36501 * 23 22 4 25 25 H 1.08994 * 109.46981 * 60.00891 * 1 2 3 26 26 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47366 * 299.99951 * 1 2 3 28 28 H 1.08999 * 109.47521 * 59.99131 * 3 2 1 29 29 H 1.09009 * 109.46585 * 300.00003 * 3 2 1 30 30 H 1.09004 * 109.46708 * 184.53599 * 5 4 3 31 31 H 1.09000 * 109.47255 * 64.53264 * 5 4 3 32 32 H 0.96996 * 120.00031 * 332.38345 * 6 5 4 33 33 H 1.09005 * 109.46914 * 65.55577 * 10 7 6 34 34 H 1.09000 * 109.47033 * 305.55727 * 10 7 6 35 35 H 0.96998 * 120.00003 * 185.00267 * 15 14 12 36 36 H 1.08998 * 117.49892 * 215.00062 * 20 11 10 37 37 H 1.08993 * 117.50113 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49986 * 359.97438 * 21 11 10 39 39 H 1.09000 * 117.49442 * 144.97476 * 21 11 10 40 40 H 1.08996 * 113.61594 * 203.75391 * 22 4 3 41 41 H 1.09000 * 113.61055 * 334.65711 * 22 4 3 42 42 H 1.09000 * 113.53768 * 270.80700 * 23 22 4 43 43 H 1.09005 * 113.73628 * 139.94707 * 23 22 4 44 44 H 1.08999 * 113.61651 * 220.09057 * 24 23 22 45 45 H 1.09002 * 113.69406 * 89.19578 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.0839 0.5790 1.2928 6 7 3.6128 1.3629 2.4374 7 16 3.4370 0.6426 3.9181 8 8 2.6559 -0.5148 3.6543 9 8 2.9486 1.6804 4.7569 10 6 5.1232 0.1767 4.3980 11 6 5.0794 -0.6280 5.6986 12 6 4.3614 0.0319 6.8474 13 1 3.3226 -0.1951 7.0368 14 6 5.0320 0.9213 7.6600 15 7 6.3200 1.1252 7.4895 16 14 4.1113 1.8362 9.0033 17 1 2.6824 1.4323 8.9874 18 1 4.7047 1.5057 10.3237 19 1 4.2146 3.2986 8.7663 20 6 4.9798 -2.1505 5.5842 21 6 6.2917 -1.5003 6.0307 22 6 4.1014 0.5343 -1.2739 23 6 4.1621 1.9509 -1.8739 24 6 4.2552 2.4739 -0.4308 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8465 0.8899 29 1 1.6885 1.8464 -0.8901 30 1 5.1735 0.5927 1.2669 31 1 3.7356 -0.4494 1.3887 32 1 3.4039 2.3037 2.3278 33 1 5.7201 1.0765 4.5474 34 1 5.5706 -0.4296 3.6104 35 1 6.8066 1.6946 8.1058 36 1 4.3949 -2.6748 6.3399 37 1 4.9459 -2.5788 4.5825 38 1 7.1203 -1.5012 5.3224 39 1 6.5701 -1.5965 7.0801 40 1 5.0810 0.0776 -1.1325 41 1 3.3949 -0.1247 -1.7786 42 1 3.2468 2.2458 -2.3871 43 1 5.0583 2.1389 -2.4652 44 1 3.6727 3.3784 -0.2557 45 1 5.2764 2.5492 -0.0573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451497761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:42 Heat of formation + Delta-G solvation = -78.383577 kcal Electronic energy + Delta-G solvation = -26141.199300 eV Core-core repulsion = 22480.491470 eV Total energy + Delta-G solvation = -3660.707830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.05898 -37.10943 -36.69034 -36.11661 -34.98555 -34.35597 -32.00127 -28.96859 -28.14855 -26.77662 -26.03212 -25.42059 -25.15310 -22.29314 -21.13139 -19.69641 -18.67947 -18.53902 -17.02728 -16.61816 -16.34817 -16.05389 -15.86388 -15.44144 -14.97192 -14.61919 -14.58194 -14.21149 -13.96936 -13.71076 -13.48369 -13.01283 -12.69513 -12.45682 -12.09001 -11.95918 -11.86059 -11.76727 -11.43589 -11.28236 -11.14346 -11.04769 -10.97071 -10.90288 -10.63383 -10.48289 -10.39145 -10.35940 -10.20003 -10.04719 -9.63045 -9.60769 -9.14686 -8.97175 -8.49758 -8.04697 -6.10584 -4.23890 1.18410 3.32264 3.40848 3.49149 3.50349 3.68550 4.39172 4.41778 4.44463 4.57733 4.66779 4.78208 4.92693 5.04829 5.15053 5.18818 5.26819 5.31037 5.36386 5.39444 5.48048 5.53626 5.60886 5.66728 5.69389 5.72244 5.77391 5.78193 5.87131 6.01477 6.14631 6.24134 6.24495 6.32881 6.42422 6.66663 6.76521 7.03045 7.13829 7.24833 7.36166 7.49480 7.82556 8.22726 8.82921 9.49717 10.95990 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.004049 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.510402 B = 6913.234196 C = 7065.555548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.086 3.914 4 C -0.088 4.088 5 C 0.135 3.865 6 N -1.132 6.132 7 S 2.613 3.387 8 O -0.968 6.968 9 O -0.952 6.952 10 C -0.557 4.557 11 C 0.040 3.960 12 C -0.520 4.520 13 H 0.068 0.932 14 C 0.085 3.915 15 N -0.874 5.874 16 Si 0.893 3.107 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.279 1.279 20 C -0.206 4.206 21 C -0.135 4.135 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.129 4.129 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.408 0.592 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.262 0.738 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 1.645 -18.421 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C 0.009 3.991 4 C -0.090 4.090 5 C 0.008 3.992 6 N -0.888 5.888 7 S 2.710 3.290 8 O -0.958 6.958 9 O -0.942 6.942 10 C -0.690 4.690 11 C 0.038 3.962 12 C -0.558 4.558 13 H 0.086 0.914 14 C -0.121 4.121 15 N -0.509 5.509 16 Si 0.720 3.280 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.205 1.205 20 C -0.243 4.243 21 C -0.174 4.174 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.166 4.166 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.241 0.759 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.892 1.328 -17.934 18.399 hybrid contribution 0.156 1.222 0.555 1.351 sum -3.736 2.550 -17.378 17.958 Atomic orbital electron populations 1.22723 0.81171 1.02857 0.99637 1.87890 1.19415 1.27212 1.95292 1.22194 0.91606 0.85236 1.00044 1.22012 0.93781 0.97989 0.95178 1.21157 0.97619 0.95994 0.84424 1.55970 1.84866 1.21880 1.26076 1.04928 0.78156 0.74293 0.71633 1.93505 1.66810 1.51727 1.83764 1.93539 1.78817 1.56600 1.65223 1.29987 1.21908 1.10531 1.06560 1.18266 1.00650 0.86529 0.90798 1.20584 0.97546 1.24820 1.12820 0.91388 1.24941 0.94770 0.95210 0.97146 1.70008 1.07215 1.37206 1.36466 0.86496 0.80720 0.80097 0.80662 1.19129 1.21023 1.20478 1.23150 1.02934 0.97744 1.00485 1.22497 0.89987 1.04314 1.00637 1.22900 1.01487 0.96555 0.95221 1.22874 1.01936 0.96863 0.96314 1.22991 1.01096 0.96380 0.96162 0.94556 0.89548 0.93941 0.92685 0.93379 0.92045 0.89424 0.75944 0.85404 0.88489 0.92816 0.89670 0.91071 0.91777 0.89307 0.89632 0.90586 0.90412 0.91312 0.91266 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.15 10.35 -35.23 -0.36 -5.52 16 3 C 0.09 1.00 5.04 37.16 0.19 1.19 16 4 C -0.09 -0.95 0.70 -153.70 -0.11 -1.06 16 5 C 0.13 1.77 5.46 -4.04 -0.02 1.74 16 6 N -1.13 -17.23 5.11 -10.61 -0.05 -17.29 16 7 S 2.61 54.30 4.99 -107.50 -0.54 53.76 16 8 O -0.97 -22.17 17.39 -57.54 -1.00 -23.17 16 9 O -0.95 -23.23 17.37 -57.54 -1.00 -24.23 16 10 C -0.56 -11.79 6.01 37.16 0.22 -11.56 16 11 C 0.04 0.98 1.56 -155.66 -0.24 0.74 16 12 C -0.52 -14.50 7.52 -34.44 -0.26 -14.76 16 13 H 0.07 1.95 7.82 -52.48 -0.41 1.53 16 14 C 0.08 2.35 5.43 -17.82 -0.10 2.26 16 15 N -0.87 -24.40 12.65 55.43 0.70 -23.70 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.21 -4.59 9.92 -26.69 -0.26 -4.86 16 21 C -0.14 -3.14 9.17 -26.69 -0.24 -3.39 16 22 C -0.12 -1.14 7.17 -25.83 -0.19 -1.32 16 23 C -0.14 -1.11 7.74 -25.83 -0.20 -1.31 16 24 C -0.13 -1.12 7.21 -25.92 -0.19 -1.31 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.68 7.36 -51.93 -0.38 0.29 16 29 H 0.05 0.46 7.32 -51.92 -0.38 0.08 16 30 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.09 1.29 7.52 -51.93 -0.39 0.90 16 32 H 0.41 5.42 8.46 -34.47 -0.29 5.13 16 33 H 0.13 2.76 8.14 -51.92 -0.42 2.34 16 34 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 35 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.09 2.20 8.14 -51.93 -0.42 1.77 16 40 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 42 H 0.08 0.57 7.62 -51.93 -0.40 0.18 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -33.73 378.74 -9.56 -43.29 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.70 Total: 6.26 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: -0.29 Total: -32.17 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.65 Total: -40.99 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -2.37 Total: -52.92 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 54.30 SS G_CDS: -0.54 Total: 53.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.73 -9.56 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451497761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.093 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds