Wall clock time and date at job start Tue Mar 31 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99948 * 2 1 4 4 C 1.52997 * 109.47577 * 180.02562 * 3 2 1 5 5 C 1.53002 * 112.84457 * 293.42211 * 4 3 2 6 6 N 1.46503 * 109.47273 * 304.52871 * 5 4 3 7 7 S 1.65598 * 119.99996 * 152.37413 * 6 5 4 8 8 O 1.42105 * 104.27817 * 308.93341 * 7 6 5 9 9 O 1.42095 * 104.27873 * 181.07524 * 7 6 5 10 10 C 1.81401 * 104.44921 * 65.00271 * 7 6 5 11 11 C 1.53002 * 109.47120 * 185.55295 * 10 7 6 12 12 C 1.50692 * 115.55362 * 305.79397 * 11 10 7 13 13 H 1.08004 * 119.99828 * 95.25006 * 12 11 10 14 14 C 1.37877 * 120.00112 * 274.98482 * 12 11 10 15 15 N 1.31511 * 119.99945 * 355.38625 * 14 12 11 16 16 Si 1.86799 * 120.00004 * 175.39918 * 14 12 11 17 17 H 1.48497 * 109.47315 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47672 * 119.99479 * 16 14 12 19 19 H 1.48503 * 109.46958 * 239.99376 * 16 14 12 20 20 C 1.53002 * 117.49580 * 91.46539 * 11 10 7 21 21 C 1.53003 * 117.49533 * 160.12362 * 11 10 7 22 22 C 1.53779 * 113.61773 * 64.61366 * 4 3 2 23 23 C 1.53958 * 87.01483 * 89.23100 * 22 4 3 24 24 C 1.53772 * 87.11246 * 25.36501 * 23 22 4 25 25 H 1.08994 * 109.46981 * 60.00891 * 1 2 3 26 26 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47366 * 299.99951 * 1 2 3 28 28 H 1.08999 * 109.47521 * 59.99131 * 3 2 1 29 29 H 1.09009 * 109.46585 * 300.00003 * 3 2 1 30 30 H 1.09004 * 109.46708 * 184.53599 * 5 4 3 31 31 H 1.09000 * 109.47255 * 64.53264 * 5 4 3 32 32 H 0.96996 * 120.00031 * 332.38345 * 6 5 4 33 33 H 1.09005 * 109.46914 * 65.55577 * 10 7 6 34 34 H 1.09000 * 109.47033 * 305.55727 * 10 7 6 35 35 H 0.96998 * 120.00003 * 185.00267 * 15 14 12 36 36 H 1.08998 * 117.49892 * 215.00062 * 20 11 10 37 37 H 1.08993 * 117.50113 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49986 * 359.97438 * 21 11 10 39 39 H 1.09000 * 117.49442 * 144.97476 * 21 11 10 40 40 H 1.08996 * 113.61594 * 203.75391 * 22 4 3 41 41 H 1.09000 * 113.61055 * 334.65711 * 22 4 3 42 42 H 1.09000 * 113.53768 * 270.80700 * 23 22 4 43 43 H 1.09005 * 113.73628 * 139.94707 * 23 22 4 44 44 H 1.08999 * 113.61651 * 220.09057 * 24 23 22 45 45 H 1.09002 * 113.69406 * 89.19578 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.0839 0.5790 1.2928 6 7 3.6128 1.3629 2.4374 7 16 3.4370 0.6426 3.9181 8 8 2.6559 -0.5148 3.6543 9 8 2.9486 1.6804 4.7569 10 6 5.1232 0.1767 4.3980 11 6 5.0794 -0.6280 5.6986 12 6 4.3614 0.0319 6.8474 13 1 3.3226 -0.1951 7.0368 14 6 5.0320 0.9213 7.6600 15 7 6.3200 1.1252 7.4895 16 14 4.1113 1.8362 9.0033 17 1 2.6824 1.4323 8.9874 18 1 4.7047 1.5057 10.3237 19 1 4.2146 3.2986 8.7663 20 6 4.9798 -2.1505 5.5842 21 6 6.2917 -1.5003 6.0307 22 6 4.1014 0.5343 -1.2739 23 6 4.1621 1.9509 -1.8739 24 6 4.2552 2.4739 -0.4308 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8465 0.8899 29 1 1.6885 1.8464 -0.8901 30 1 5.1735 0.5927 1.2669 31 1 3.7356 -0.4494 1.3887 32 1 3.4039 2.3037 2.3278 33 1 5.7201 1.0765 4.5474 34 1 5.5706 -0.4296 3.6104 35 1 6.8066 1.6946 8.1058 36 1 4.3949 -2.6748 6.3399 37 1 4.9459 -2.5788 4.5825 38 1 7.1203 -1.5012 5.3224 39 1 6.5701 -1.5965 7.0801 40 1 5.0810 0.0776 -1.1325 41 1 3.3949 -0.1247 -1.7786 42 1 3.2468 2.2458 -2.3871 43 1 5.0583 2.1389 -2.4652 44 1 3.6727 3.3784 -0.2557 45 1 5.2764 2.5492 -0.0573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451497761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:42 Heat of formation + Delta-G solvation = -102.045123 kcal Electronic energy + Delta-G solvation = -26142.225342 eV Core-core repulsion = 22480.491470 eV Total energy + Delta-G solvation = -3661.733872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.85382 -38.54204 -38.00733 -37.87276 -36.73848 -35.53693 -34.08664 -29.93425 -29.78039 -27.73805 -27.48693 -26.77691 -25.99860 -23.09189 -22.93648 -21.52627 -20.21798 -19.42936 -18.51981 -18.30289 -17.61475 -17.11599 -16.97042 -16.73599 -16.54371 -16.36171 -15.72943 -15.55121 -15.29391 -15.01686 -14.83509 -14.40142 -13.81741 -13.71249 -13.49341 -13.19138 -13.08500 -12.95345 -12.89146 -12.85921 -12.83916 -12.78767 -12.53723 -12.43785 -12.16177 -12.10708 -11.87692 -11.49461 -11.38887 -11.10259 -11.02847 -10.97013 -10.52989 -10.51544 -10.36494 -9.85942 -8.20665 -6.37495 -0.45301 1.33951 1.39446 1.50074 2.10411 2.38653 2.80421 3.03179 3.06398 3.35802 3.54615 3.58693 3.71056 3.87402 3.98992 4.04553 4.10523 4.29381 4.39371 4.45671 4.51823 4.54830 4.56149 4.60950 4.63434 4.69272 4.83944 4.85607 4.86697 4.96136 4.99382 4.99565 5.00216 5.18249 5.22532 5.28681 5.41890 5.42962 5.58669 5.64572 5.70054 6.18388 6.21428 6.27385 6.69990 7.36948 8.85576 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.004049 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.510402 B = 6913.234196 C = 7065.555548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.080 3.920 4 C -0.096 4.096 5 C 0.125 3.875 6 N -1.114 6.114 7 S 2.627 3.373 8 O -0.995 6.995 9 O -0.996 6.996 10 C -0.553 4.553 11 C 0.005 3.995 12 C -0.538 4.538 13 H 0.045 0.955 14 C 0.047 3.953 15 N -0.890 5.890 16 Si 0.931 3.069 17 H -0.276 1.276 18 H -0.268 1.268 19 H -0.276 1.276 20 C -0.194 4.194 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.126 4.126 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.419 0.581 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.266 0.734 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 2.058 -20.541 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.003 3.997 4 C -0.098 4.098 5 C -0.001 4.001 6 N -0.875 5.875 7 S 2.724 3.276 8 O -0.984 6.984 9 O -0.987 6.987 10 C -0.685 4.685 11 C 0.002 3.998 12 C -0.575 4.575 13 H 0.064 0.936 14 C -0.156 4.156 15 N -0.526 5.526 16 Si 0.757 3.243 17 H -0.200 1.200 18 H -0.193 1.193 19 H -0.201 1.201 20 C -0.231 4.231 21 C -0.170 4.170 22 C -0.160 4.160 23 C -0.169 4.169 24 C -0.163 4.163 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.254 0.746 33 H 0.140 0.860 34 H 0.153 0.847 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.014 1.744 -20.045 20.345 hybrid contribution -0.151 1.050 1.153 1.567 sum -3.165 2.793 -18.892 19.358 Atomic orbital electron populations 1.22871 0.80233 1.03567 1.00353 1.87851 1.20685 1.28488 1.95446 1.22342 0.92266 0.84656 1.00420 1.22119 0.93407 0.99779 0.94453 1.21471 0.99234 0.94937 0.84440 1.55428 1.84786 1.22486 1.24782 1.04196 0.77867 0.73397 0.72159 1.93467 1.67707 1.52876 1.84392 1.93472 1.79852 1.57790 1.67543 1.29858 1.22140 1.10474 1.06048 1.18426 1.01762 0.88031 0.91533 1.20732 0.96871 1.25503 1.14410 0.93634 1.25466 0.95515 0.95834 0.98806 1.70036 1.07661 1.37726 1.37170 0.85908 0.79438 0.79262 0.79710 1.20033 1.19286 1.20142 1.23209 1.01899 0.96222 1.01771 1.22428 0.90659 1.03871 0.99992 1.22930 1.01577 0.97365 0.94122 1.22835 1.02909 0.95290 0.95888 1.23026 1.01180 0.95462 0.96620 0.92109 0.88978 0.94920 0.94058 0.91199 0.89417 0.91227 0.74604 0.85965 0.84720 0.92489 0.90287 0.88274 0.89457 0.91556 0.88708 0.91331 0.89859 0.89921 0.90696 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.79 16 2 O -0.41 -10.70 10.35 -148.98 -1.54 -12.24 16 3 C 0.08 1.74 5.04 71.98 0.36 2.10 16 4 C -0.10 -1.86 0.70 -51.66 -0.04 -1.90 16 5 C 0.12 3.03 5.46 86.38 0.47 3.51 16 6 N -1.11 -32.73 5.11 -187.48 -0.96 -33.69 16 7 S 2.63 108.88 4.99 -56.49 -0.28 108.60 16 8 O -0.99 -45.76 17.39 -127.65 -2.22 -47.98 16 9 O -1.00 -49.62 17.37 -127.65 -2.22 -51.83 16 10 C -0.55 -22.70 6.01 71.98 0.43 -22.27 16 11 C 0.00 0.22 1.56 -52.93 -0.08 0.14 16 12 C -0.54 -30.44 7.52 25.60 0.19 -30.24 16 13 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 14 C 0.05 2.64 5.43 84.66 0.46 3.10 16 15 N -0.89 -49.68 12.65 21.45 0.27 -49.40 16 16 Si 0.93 45.42 29.54 68.60 2.03 47.45 16 17 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 C -0.19 -8.42 9.92 30.62 0.30 -8.12 16 21 C -0.13 -5.92 9.17 30.62 0.28 -5.64 16 22 C -0.12 -1.92 7.17 31.18 0.22 -1.70 16 23 C -0.13 -1.61 7.74 31.18 0.24 -1.37 16 24 C -0.13 -1.81 7.21 31.12 0.22 -1.58 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 0.99 7.36 -2.39 -0.02 0.97 16 29 H 0.07 1.19 7.32 -2.38 -0.02 1.17 16 30 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 31 H 0.07 1.96 7.52 -2.39 -0.02 1.95 16 32 H 0.42 10.70 8.46 -96.75 -0.82 9.88 16 33 H 0.12 5.17 8.14 -2.39 -0.02 5.15 16 34 H 0.13 4.37 8.09 -2.39 -0.02 4.35 16 35 H 0.27 14.03 8.32 -92.71 -0.77 13.26 16 36 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.10 3.71 8.14 -2.39 -0.02 3.70 16 38 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 41 H 0.07 1.19 7.94 -2.39 -0.02 1.17 16 42 H 0.08 0.94 7.62 -2.39 -0.02 0.92 16 43 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 45 H 0.10 1.30 8.06 -2.39 -0.02 1.28 16 Total: -1.00 -73.06 378.74 -0.45 -73.51 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.15 Total: 27.77 kcal Atomic # 6 Polarization: -66.50 SS G_CDS: 4.32 Total: -62.18 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -0.69 Total: -83.09 kcal Atomic # 8 Polarization: -106.07 SS G_CDS: -5.98 Total: -112.05 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 108.88 SS G_CDS: -0.28 Total: 108.60 kcal Total: -73.06 -0.45 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451497761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.537 kcal (2) G-P(sol) polarization free energy of solvation -73.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds