Wall clock time and date at job start Tue Mar 31 2020 11:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99761 * 2 1 4 4 C 1.53001 * 112.85124 * 65.49484 * 3 2 1 5 5 C 1.53011 * 109.47250 * 44.89471 * 4 3 2 6 6 N 1.46496 * 109.47234 * 174.70070 * 5 4 3 7 7 S 1.65594 * 119.99808 * 164.99870 * 6 5 4 8 8 O 1.42100 * 104.27854 * 181.06787 * 7 6 5 9 9 O 1.42093 * 104.28323 * 308.92877 * 7 6 5 10 10 C 1.81402 * 104.44803 * 65.00190 * 7 6 5 11 11 C 1.53009 * 109.47182 * 180.40862 * 10 7 6 12 12 C 1.50697 * 115.55044 * 65.12427 * 11 10 7 13 13 H 1.08005 * 119.99509 * 264.63696 * 12 11 10 14 14 C 1.37875 * 119.99970 * 84.63725 * 12 11 10 15 15 N 1.31510 * 119.99805 * 2.07044 * 14 12 11 16 16 Si 1.86803 * 119.99802 * 182.06739 * 14 12 11 17 17 H 1.48502 * 109.46785 * 60.00402 * 16 14 12 18 18 H 1.48496 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47299 * 300.00472 * 16 14 12 20 20 C 1.53001 * 117.49496 * 279.45635 * 11 10 7 21 21 C 1.52998 * 117.49914 * 210.79601 * 11 10 7 22 22 C 1.53783 * 113.69005 * 196.75711 * 3 2 1 23 23 C 1.53784 * 87.07899 * 89.13384 * 22 3 2 24 24 C 1.53777 * 113.61996 * 294.29543 * 3 2 1 25 25 H 1.08992 * 109.47455 * 295.75278 * 1 2 3 26 26 H 1.09001 * 109.47181 * 55.75645 * 1 2 3 27 27 H 1.09002 * 109.46923 * 175.75010 * 1 2 3 28 28 H 1.08999 * 109.47149 * 284.89857 * 4 3 2 29 29 H 1.08998 * 109.47496 * 164.89695 * 4 3 2 30 30 H 1.09000 * 109.46752 * 54.69796 * 5 4 3 31 31 H 1.09004 * 109.46647 * 294.70248 * 5 4 3 32 32 H 0.96997 * 119.99793 * 344.72620 * 6 5 4 33 33 H 1.09002 * 109.47224 * 300.40190 * 10 7 6 34 34 H 1.09001 * 109.47495 * 60.40974 * 10 7 6 35 35 H 0.97003 * 119.99674 * 185.01888 * 15 14 12 36 36 H 1.09003 * 117.50307 * 359.97438 * 20 11 10 37 37 H 1.08996 * 117.50059 * 145.02102 * 20 11 10 38 38 H 1.08994 * 117.49822 * 214.97677 * 21 11 10 39 39 H 1.09002 * 117.49679 * 359.97438 * 21 11 10 40 40 H 1.09005 * 113.61452 * 203.67381 * 22 3 2 41 41 H 1.08996 * 113.61588 * 334.58044 * 22 3 2 42 42 H 1.09007 * 113.61030 * 270.88455 * 23 22 3 43 43 H 1.08997 * 113.69028 * 139.99432 * 23 22 3 44 44 H 1.09006 * 113.60879 * 25.34730 * 24 3 2 45 45 H 1.08998 * 113.61915 * 156.25116 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7176 2.0861 1.2829 5 6 1.9330 1.1762 2.4941 6 7 1.7765 1.9556 3.7245 7 16 1.5847 1.1819 5.1760 8 8 1.4408 2.2356 6.1185 9 8 0.5308 0.2576 4.9440 10 6 3.1531 0.3076 5.4334 11 6 3.0965 -0.4634 6.7539 12 6 2.0899 -1.5834 6.8099 13 1 1.1108 -1.4088 7.2311 14 6 2.4188 -2.8309 6.3236 15 7 3.6244 -3.0543 5.8481 16 14 1.1519 -4.2036 6.3401 17 1 -0.0248 -3.8009 5.5287 18 1 1.7498 -5.4359 5.7665 19 1 0.7234 -4.4649 7.7377 20 6 3.3521 0.3220 8.0418 21 6 4.4085 -0.6539 7.5175 22 6 3.4933 1.3215 -0.4060 23 6 3.0128 1.4777 -1.8585 24 6 1.7312 2.1041 -1.2842 25 1 -0.3634 0.4465 0.9255 26 1 -0.3633 0.5783 -0.8495 27 1 -0.3633 -1.0249 -0.0762 28 1 0.6846 2.4339 1.2690 29 1 2.3885 2.9427 1.3481 30 1 2.9371 0.7536 2.4569 31 1 1.1989 0.3706 2.4783 32 1 1.7891 2.9249 3.6895 33 1 3.3193 -0.3899 4.6124 34 1 3.9697 1.0287 5.4685 35 1 3.8339 -3.9088 5.4396 36 1 3.5610 1.3877 7.9485 37 1 2.7925 0.0283 8.9299 38 1 4.5434 -1.5891 8.0608 39 1 5.3121 -0.2303 7.0790 40 1 4.0393 2.1874 -0.0313 41 1 4.0085 0.3801 -0.2153 42 1 2.8448 0.5284 -2.3672 43 1 3.6130 2.1724 -2.4460 44 1 0.8236 1.7943 -1.8024 45 1 1.7953 3.1838 -1.1496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451583978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:47 Heat of formation + Delta-G solvation = -76.819853 kcal Electronic energy + Delta-G solvation = -25934.431301 eV Core-core repulsion = 22273.791279 eV Total energy + Delta-G solvation = -3660.640022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.23826 -36.71362 -36.26461 -35.69465 -35.42272 -34.98566 -31.98443 -30.16253 -28.15329 -27.18761 -25.77658 -25.40220 -24.37955 -21.79023 -21.16954 -19.79329 -19.52867 -18.61508 -17.02376 -16.52696 -16.27556 -16.10091 -15.60125 -15.18886 -15.12997 -14.73053 -14.60348 -14.38530 -14.05628 -13.70859 -13.43464 -13.06715 -12.79645 -12.40303 -12.04431 -11.93772 -11.78003 -11.70839 -11.41243 -11.32045 -11.22627 -11.09109 -11.04144 -10.96995 -10.85701 -10.80328 -10.54684 -10.42406 -10.23863 -10.06958 -9.63763 -9.48763 -9.13333 -9.02098 -8.48548 -8.03950 -6.08550 -4.19266 1.10850 3.36422 3.38586 3.43978 3.47252 3.57466 4.23845 4.38723 4.42794 4.55709 4.60263 4.64799 4.98664 5.06256 5.11026 5.18379 5.20151 5.25005 5.30079 5.39165 5.45749 5.49703 5.59651 5.62595 5.65936 5.73185 5.82436 5.90144 5.94628 5.99413 6.07179 6.12161 6.24458 6.32020 6.40116 6.64963 6.74580 7.02728 7.15145 7.24344 7.32407 7.47043 7.85224 8.24531 8.86334 9.51756 10.99254 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.004398 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.162147 B = 6364.826547 C = 7176.859604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.357 6.357 3 C 0.092 3.908 4 C -0.139 4.139 5 C 0.121 3.879 6 N -1.135 6.135 7 S 2.606 3.394 8 O -0.979 6.979 9 O -0.946 6.946 10 C -0.554 4.554 11 C 0.040 3.960 12 C -0.509 4.509 13 H 0.068 0.932 14 C 0.081 3.919 15 N -0.877 5.877 16 Si 0.889 3.111 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.213 4.213 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.165 4.165 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.407 0.593 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.263 0.737 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 10.538 -14.525 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.275 6.275 3 C 0.051 3.949 4 C -0.178 4.178 5 C -0.005 4.005 6 N -0.892 5.892 7 S 2.704 3.296 8 O -0.969 6.969 9 O -0.936 6.936 10 C -0.687 4.687 11 C 0.037 3.963 12 C -0.546 4.546 13 H 0.086 0.914 14 C -0.124 4.124 15 N -0.512 5.512 16 Si 0.715 3.285 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.251 4.251 21 C -0.174 4.174 22 C -0.164 4.164 23 C -0.172 4.172 24 C -0.202 4.202 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.239 0.761 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.926 10.032 -14.038 17.279 hybrid contribution -0.065 -0.301 -0.403 0.507 sum -0.991 9.731 -14.441 17.442 Atomic orbital electron populations 1.22817 0.80951 1.03006 1.00408 1.87951 1.19809 1.25078 1.94703 1.22519 0.95482 0.84181 0.92723 1.22225 1.02936 0.98790 0.93834 1.21132 1.02271 0.94230 0.82863 1.55991 1.92345 1.17496 1.23330 1.05129 0.78265 0.74220 0.72034 1.93501 1.87063 1.55586 1.60796 1.93539 1.51836 1.64732 1.83499 1.29975 1.18405 1.10773 1.09577 1.18302 0.98523 0.95495 0.83935 1.20488 0.98494 0.93126 1.42534 0.91388 1.24931 0.94924 0.98212 0.94311 1.69997 1.18696 1.24523 1.38008 0.86684 0.82154 0.80799 0.78819 1.19322 1.21198 1.19961 1.23229 1.05978 0.95858 0.99987 1.22516 0.91823 0.99020 1.03996 1.23047 0.94046 1.03401 0.95887 1.22756 0.96853 1.01210 0.96429 1.23540 0.99078 1.00235 0.97394 0.93253 0.94043 0.89334 0.90971 0.90083 0.91654 0.89802 0.76094 0.85173 0.88208 0.92770 0.90748 0.89553 0.89302 0.91661 0.88716 0.90067 0.89815 0.91391 0.90969 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.34 101.05 1.05 1.31 16 2 O -0.36 -4.57 9.73 -35.23 -0.34 -4.91 16 3 C 0.09 0.96 0.80 -89.81 -0.07 0.89 16 4 C -0.14 -1.47 4.34 -26.73 -0.12 -1.59 16 5 C 0.12 1.71 5.71 -4.04 -0.02 1.69 16 6 N -1.14 -17.05 5.88 -10.61 -0.06 -17.11 16 7 S 2.61 53.08 5.28 -107.50 -0.57 52.52 16 8 O -0.98 -21.55 18.08 -57.54 -1.04 -22.59 16 9 O -0.95 -22.81 16.81 -57.54 -0.97 -23.77 16 10 C -0.55 -11.73 5.93 37.16 0.22 -11.51 16 11 C 0.04 0.98 1.39 -155.66 -0.22 0.77 16 12 C -0.51 -14.08 7.90 -34.44 -0.27 -14.35 16 13 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 14 C 0.08 2.23 5.43 -17.82 -0.10 2.13 16 15 N -0.88 -24.36 12.72 55.43 0.71 -23.65 16 16 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.21 -4.77 9.96 -26.69 -0.27 -5.03 16 21 C -0.13 -3.12 9.23 -26.69 -0.25 -3.37 16 22 C -0.13 -1.19 7.47 -25.92 -0.19 -1.38 16 23 C -0.14 -1.12 8.02 -25.92 -0.21 -1.32 16 24 C -0.16 -1.37 7.19 -25.92 -0.19 -1.56 16 25 H 0.05 0.56 6.77 -51.93 -0.35 0.21 16 26 H 0.04 0.36 6.59 -51.93 -0.34 0.02 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.73 7.82 -51.93 -0.41 0.33 16 29 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.36 6.44 -51.93 -0.33 1.02 16 32 H 0.41 4.99 8.62 -34.47 -0.30 4.69 16 33 H 0.13 2.83 8.14 -51.92 -0.42 2.41 16 34 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 35 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 45 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -33.22 375.51 -9.78 -43.00 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.51 Total: 7.51 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: -0.63 Total: -33.32 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.64 Total: -40.77 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -2.35 Total: -51.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.57 Total: 52.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.22 -9.78 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451583978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.819 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds