Wall clock time and date at job start Tue Mar 31 2020 11:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99761 * 2 1 4 4 C 1.53001 * 112.85124 * 65.49484 * 3 2 1 5 5 C 1.53011 * 109.47250 * 44.89471 * 4 3 2 6 6 N 1.46496 * 109.47234 * 174.70070 * 5 4 3 7 7 S 1.65594 * 119.99808 * 164.99870 * 6 5 4 8 8 O 1.42100 * 104.27854 * 181.06787 * 7 6 5 9 9 O 1.42093 * 104.28323 * 308.92877 * 7 6 5 10 10 C 1.81402 * 104.44803 * 65.00190 * 7 6 5 11 11 C 1.53009 * 109.47182 * 180.40862 * 10 7 6 12 12 C 1.50697 * 115.55044 * 65.12427 * 11 10 7 13 13 H 1.08005 * 119.99509 * 264.63696 * 12 11 10 14 14 C 1.37875 * 119.99970 * 84.63725 * 12 11 10 15 15 N 1.31510 * 119.99805 * 2.07044 * 14 12 11 16 16 Si 1.86803 * 119.99802 * 182.06739 * 14 12 11 17 17 H 1.48502 * 109.46785 * 60.00402 * 16 14 12 18 18 H 1.48496 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47299 * 300.00472 * 16 14 12 20 20 C 1.53001 * 117.49496 * 279.45635 * 11 10 7 21 21 C 1.52998 * 117.49914 * 210.79601 * 11 10 7 22 22 C 1.53783 * 113.69005 * 196.75711 * 3 2 1 23 23 C 1.53784 * 87.07899 * 89.13384 * 22 3 2 24 24 C 1.53777 * 113.61996 * 294.29543 * 3 2 1 25 25 H 1.08992 * 109.47455 * 295.75278 * 1 2 3 26 26 H 1.09001 * 109.47181 * 55.75645 * 1 2 3 27 27 H 1.09002 * 109.46923 * 175.75010 * 1 2 3 28 28 H 1.08999 * 109.47149 * 284.89857 * 4 3 2 29 29 H 1.08998 * 109.47496 * 164.89695 * 4 3 2 30 30 H 1.09000 * 109.46752 * 54.69796 * 5 4 3 31 31 H 1.09004 * 109.46647 * 294.70248 * 5 4 3 32 32 H 0.96997 * 119.99793 * 344.72620 * 6 5 4 33 33 H 1.09002 * 109.47224 * 300.40190 * 10 7 6 34 34 H 1.09001 * 109.47495 * 60.40974 * 10 7 6 35 35 H 0.97003 * 119.99674 * 185.01888 * 15 14 12 36 36 H 1.09003 * 117.50307 * 359.97438 * 20 11 10 37 37 H 1.08996 * 117.50059 * 145.02102 * 20 11 10 38 38 H 1.08994 * 117.49822 * 214.97677 * 21 11 10 39 39 H 1.09002 * 117.49679 * 359.97438 * 21 11 10 40 40 H 1.09005 * 113.61452 * 203.67381 * 22 3 2 41 41 H 1.08996 * 113.61588 * 334.58044 * 22 3 2 42 42 H 1.09007 * 113.61030 * 270.88455 * 23 22 3 43 43 H 1.08997 * 113.69028 * 139.99432 * 23 22 3 44 44 H 1.09006 * 113.60879 * 25.34730 * 24 3 2 45 45 H 1.08998 * 113.61915 * 156.25116 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7176 2.0861 1.2829 5 6 1.9330 1.1762 2.4941 6 7 1.7765 1.9556 3.7245 7 16 1.5847 1.1819 5.1760 8 8 1.4408 2.2356 6.1185 9 8 0.5308 0.2576 4.9440 10 6 3.1531 0.3076 5.4334 11 6 3.0965 -0.4634 6.7539 12 6 2.0899 -1.5834 6.8099 13 1 1.1108 -1.4088 7.2311 14 6 2.4188 -2.8309 6.3236 15 7 3.6244 -3.0543 5.8481 16 14 1.1519 -4.2036 6.3401 17 1 -0.0248 -3.8009 5.5287 18 1 1.7498 -5.4359 5.7665 19 1 0.7234 -4.4649 7.7377 20 6 3.3521 0.3220 8.0418 21 6 4.4085 -0.6539 7.5175 22 6 3.4933 1.3215 -0.4060 23 6 3.0128 1.4777 -1.8585 24 6 1.7312 2.1041 -1.2842 25 1 -0.3634 0.4465 0.9255 26 1 -0.3633 0.5783 -0.8495 27 1 -0.3633 -1.0249 -0.0762 28 1 0.6846 2.4339 1.2690 29 1 2.3885 2.9427 1.3481 30 1 2.9371 0.7536 2.4569 31 1 1.1989 0.3706 2.4783 32 1 1.7891 2.9249 3.6895 33 1 3.3193 -0.3899 4.6124 34 1 3.9697 1.0287 5.4685 35 1 3.8339 -3.9088 5.4396 36 1 3.5610 1.3877 7.9485 37 1 2.7925 0.0283 8.9299 38 1 4.5434 -1.5891 8.0608 39 1 5.3121 -0.2303 7.0790 40 1 4.0393 2.1874 -0.0313 41 1 4.0085 0.3801 -0.2153 42 1 2.8448 0.5284 -2.3672 43 1 3.6130 2.1724 -2.4460 44 1 0.8236 1.7943 -1.8024 45 1 1.7953 3.1838 -1.1496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451583978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:46 Heat of formation + Delta-G solvation = -100.069313 kcal Electronic energy + Delta-G solvation = -25935.439473 eV Core-core repulsion = 22273.791279 eV Total energy + Delta-G solvation = -3661.648194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01036 -38.56203 -37.97517 -36.85749 -36.50998 -36.49307 -34.06533 -31.16606 -29.87474 -28.00383 -27.47289 -26.50373 -25.31134 -22.98333 -22.67377 -21.51407 -20.50503 -20.10901 -18.51573 -18.34452 -17.38004 -17.14180 -16.77738 -16.66874 -16.60750 -16.19569 -15.83732 -15.65328 -15.41361 -14.94621 -14.89264 -14.34469 -13.81446 -13.75171 -13.56477 -13.26771 -13.13127 -12.98697 -12.92056 -12.87281 -12.82703 -12.81337 -12.43673 -12.26589 -12.21204 -12.07741 -11.90385 -11.77358 -11.63452 -11.49741 -10.99736 -10.96911 -10.50310 -10.48476 -10.30489 -9.85259 -8.18136 -6.32454 -0.51355 1.38014 1.40964 1.49066 2.01817 2.40747 2.75564 2.92483 3.09598 3.37261 3.43114 3.54491 3.68107 3.81590 3.94286 4.01533 4.09068 4.25056 4.28676 4.41318 4.48015 4.50643 4.53082 4.58851 4.63864 4.70900 4.83330 4.84819 4.86769 4.91022 4.96739 4.97271 5.09690 5.16901 5.20990 5.22401 5.33623 5.44558 5.45784 5.61702 5.72236 6.19856 6.23329 6.35199 6.73530 7.39568 8.88955 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.004398 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.162147 B = 6364.826547 C = 7176.859604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.384 6.384 3 C 0.076 3.924 4 C -0.132 4.132 5 C 0.115 3.885 6 N -1.113 6.113 7 S 2.623 3.377 8 O -0.996 6.996 9 O -0.991 6.991 10 C -0.553 4.553 11 C 0.006 3.994 12 C -0.527 4.527 13 H 0.048 0.952 14 C 0.042 3.958 15 N -0.894 5.894 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.200 4.200 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.154 4.154 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.424 0.576 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 12.492 -15.817 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.303 6.303 3 C 0.036 3.964 4 C -0.171 4.171 5 C -0.011 4.011 6 N -0.875 5.875 7 S 2.720 3.280 8 O -0.986 6.986 9 O -0.980 6.980 10 C -0.686 4.686 11 C 0.004 3.996 12 C -0.564 4.564 13 H 0.067 0.933 14 C -0.160 4.160 15 N -0.530 5.530 16 Si 0.756 3.244 17 H -0.203 1.203 18 H -0.199 1.199 19 H -0.193 1.193 20 C -0.238 4.238 21 C -0.171 4.171 22 C -0.167 4.167 23 C -0.169 4.169 24 C -0.191 4.191 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.260 0.740 33 H 0.138 0.862 34 H 0.153 0.847 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.231 11.994 -15.313 19.453 hybrid contribution -0.274 -0.878 -0.011 0.920 sum -0.505 11.116 -15.324 18.938 Atomic orbital electron populations 1.22876 0.80463 1.03365 1.00749 1.87915 1.20605 1.26934 1.94879 1.22790 0.96301 0.83708 0.93598 1.22252 1.04084 0.98809 0.91967 1.21265 1.01657 0.94496 0.83647 1.55427 1.91846 1.18310 1.21904 1.04321 0.77479 0.73514 0.72654 1.93466 1.87202 1.55663 1.62284 1.93488 1.53744 1.66343 1.84475 1.29872 1.20220 1.11139 1.07331 1.18444 0.98726 0.96168 0.86246 1.20670 0.98522 0.94690 1.42528 0.93339 1.25472 0.96372 0.99806 0.94353 1.70041 1.19445 1.24954 1.38564 0.86030 0.80183 0.79271 0.78928 1.20317 1.19857 1.19296 1.23280 1.04810 0.96966 0.98698 1.22457 0.92389 0.98576 1.03684 1.23165 0.93379 1.03371 0.96810 1.22724 0.97099 1.01169 0.95914 1.23526 0.99040 1.01035 0.95533 0.94361 0.91853 0.89441 0.90438 0.87253 0.91318 0.92492 0.74003 0.86209 0.84732 0.92652 0.88224 0.89941 0.91500 0.89457 0.86695 0.91896 0.90973 0.89544 0.90906 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.34 113.37 1.17 1.64 16 2 O -0.38 -9.74 9.73 -148.98 -1.45 -11.19 16 3 C 0.08 1.47 0.80 -10.27 -0.01 1.46 16 4 C -0.13 -2.49 4.34 30.60 0.13 -2.36 16 5 C 0.12 3.14 5.71 86.38 0.49 3.64 16 6 N -1.11 -31.66 5.88 -187.48 -1.10 -32.77 16 7 S 2.62 105.39 5.28 -56.49 -0.30 105.09 16 8 O -1.00 -42.59 18.08 -127.65 -2.31 -44.90 16 9 O -0.99 -48.73 16.81 -127.65 -2.15 -50.88 16 10 C -0.55 -22.88 5.93 71.99 0.43 -22.45 16 11 C 0.01 0.31 1.39 -52.93 -0.07 0.24 16 12 C -0.53 -29.63 7.90 25.60 0.20 -29.42 16 13 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 14 C 0.04 2.37 5.43 84.65 0.46 2.83 16 15 N -0.89 -50.02 12.72 21.45 0.27 -49.75 16 16 Si 0.93 44.96 29.54 68.60 2.03 46.99 16 17 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.20 -8.71 9.96 30.62 0.30 -8.41 16 21 C -0.13 -6.02 9.23 30.62 0.28 -5.73 16 22 C -0.13 -2.18 7.47 31.12 0.23 -1.95 16 23 C -0.13 -1.87 8.02 31.12 0.25 -1.62 16 24 C -0.15 -2.11 7.19 31.12 0.22 -1.89 16 25 H 0.04 0.89 6.77 -2.39 -0.02 0.87 16 26 H 0.06 1.04 6.59 -2.39 -0.02 1.03 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 1.39 7.82 -2.39 -0.02 1.37 16 29 H 0.11 1.45 7.86 -2.39 -0.02 1.43 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.88 6.44 -2.39 -0.02 1.87 16 32 H 0.42 9.25 8.62 -96.75 -0.83 8.41 16 33 H 0.12 5.20 8.14 -2.39 -0.02 5.19 16 34 H 0.13 4.49 8.09 -2.39 -0.02 4.47 16 35 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 36 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 38 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.11 1.42 7.91 -2.38 -0.02 1.40 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.01 6.70 -2.38 -0.02 0.99 16 45 H 0.11 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -72.06 375.51 -0.77 -72.83 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.14 Total: 28.61 kcal Atomic # 6 Polarization: -68.14 SS G_CDS: 4.10 Total: -64.04 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -0.83 Total: -82.51 kcal Atomic # 8 Polarization: -101.06 SS G_CDS: -5.90 Total: -106.96 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 105.39 SS G_CDS: -0.30 Total: 105.09 kcal Total: -72.06 -0.77 -72.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451583978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.244 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds