Wall clock time and date at job start Tue Mar 31 2020 11:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 114.00169 * 2 1 4 4 C 1.52997 * 110.01625 * 62.70985 * 3 2 1 5 5 N 1.46496 * 109.47690 * 56.38155 * 4 3 2 6 6 S 1.65600 * 120.00362 * 157.91691 * 5 4 3 7 7 O 1.42106 * 104.27624 * 308.93493 * 6 5 4 8 8 O 1.42096 * 104.27878 * 181.07399 * 6 5 4 9 9 C 1.81405 * 104.44318 * 65.00426 * 6 5 4 10 10 C 1.53002 * 109.46822 * 185.81430 * 9 6 5 11 11 C 1.50707 * 115.55090 * 302.02716 * 10 9 6 12 12 H 1.07998 * 119.99757 * 94.94942 * 11 10 9 13 13 C 1.37877 * 119.99755 * 274.67591 * 11 10 9 14 14 N 1.31515 * 119.99966 * 355.52681 * 13 11 10 15 15 Si 1.86802 * 119.99822 * 175.52958 * 13 11 10 16 16 H 1.48500 * 109.47210 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47151 * 120.00034 * 15 13 11 18 18 H 1.48492 * 109.47045 * 240.00067 * 15 13 11 19 19 C 1.53001 * 117.49936 * 87.69520 * 10 9 6 20 20 C 1.53000 * 117.50141 * 156.35448 * 10 9 6 21 21 C 1.54265 * 110.03050 * 184.09920 * 3 2 1 22 22 C 1.54962 * 104.16088 * 95.75523 * 21 3 2 23 23 C 1.54889 * 102.77971 * 37.88521 * 22 21 3 24 24 C 1.53869 * 110.03062 * 301.31696 * 3 2 1 25 25 H 1.09002 * 109.47164 * 305.09486 * 1 2 3 26 26 H 1.08999 * 109.47110 * 65.09091 * 1 2 3 27 27 H 1.08996 * 109.47233 * 185.09425 * 1 2 3 28 28 H 1.09004 * 109.47053 * 296.37908 * 4 3 2 29 29 H 1.09004 * 109.46867 * 176.38924 * 4 3 2 30 30 H 0.97008 * 119.99646 * 337.92730 * 5 4 3 31 31 H 1.08991 * 109.47150 * 65.81897 * 9 6 5 32 32 H 1.08992 * 109.47162 * 305.81100 * 9 6 5 33 33 H 0.96997 * 119.99880 * 184.99552 * 14 13 11 34 34 H 1.09005 * 117.49833 * 215.00343 * 19 10 9 35 35 H 1.09002 * 117.49902 * 0.02562 * 19 10 9 36 36 H 1.09000 * 117.49477 * 359.97438 * 20 10 9 37 37 H 1.09003 * 117.49961 * 144.97563 * 20 10 9 38 38 H 1.08998 * 110.48432 * 214.39798 * 21 3 2 39 39 H 1.08998 * 110.49184 * 337.04349 * 21 3 2 40 40 H 1.09002 * 110.71912 * 279.56954 * 22 21 3 41 41 H 1.08998 * 110.76795 * 156.22168 * 22 21 3 42 42 H 1.08997 * 110.48953 * 203.41253 * 23 22 21 43 43 H 1.08993 * 110.48712 * 80.76069 * 23 22 21 44 44 H 1.09005 * 110.03264 * 359.94734 * 24 3 2 45 45 H 1.08995 * 110.03695 * 121.38344 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6211 2.0520 1.2775 5 7 2.0288 1.2670 2.4453 6 16 2.2482 2.0117 3.9081 7 8 3.1117 3.1029 3.6198 8 8 2.6565 0.9641 4.7769 9 6 0.5972 2.6096 4.3637 10 6 0.6928 3.4486 5.6396 11 6 1.2778 2.7456 6.8375 12 1 2.3299 2.8438 7.0607 13 6 0.4686 1.9817 7.6516 14 7 -0.8278 1.9372 7.4349 15 14 1.2138 1.0102 9.0624 16 1 2.6823 1.2285 9.0925 17 1 0.6198 1.4654 10.3450 18 1 0.9315 -0.4351 8.8716 19 6 0.9881 4.9416 5.4829 20 6 -0.4114 4.4768 5.8934 21 6 3.5458 1.2002 -0.1036 22 6 3.8361 1.3680 -1.6165 23 6 2.8035 2.4393 -2.0467 24 6 1.5382 2.0926 -1.2350 25 1 -0.3633 0.5908 0.8408 26 1 -0.3633 0.4328 -0.9321 27 1 -0.3633 -1.0236 0.0912 28 1 0.5413 2.1993 1.2977 29 1 2.1203 3.0208 1.2986 30 1 2.1703 0.3110 2.3617 31 1 -0.0622 1.7592 4.5367 32 1 0.1967 3.2216 3.5556 33 1 -1.4061 1.4592 8.0497 34 1 1.6054 5.4154 6.2462 35 1 1.1138 5.3263 4.4708 36 1 -1.2057 4.5558 5.1512 37 1 -0.7150 4.6445 6.9268 38 1 4.0222 1.9975 0.4668 39 1 3.8858 0.2250 0.2450 40 1 3.6657 0.4318 -2.1481 41 1 4.8532 1.7252 -1.7776 42 1 2.6024 2.3679 -3.1156 43 1 3.1596 3.4370 -1.7904 44 1 0.8664 1.4785 -1.8349 45 1 1.0319 3.0065 -0.9243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451607440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:13 Heat of formation + Delta-G solvation = -105.156623 kcal Electronic energy + Delta-G solvation = -26275.334985 eV Core-core repulsion = 22613.466188 eV Total energy + Delta-G solvation = -3661.868797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.95388 -36.73971 -36.20711 -35.82791 -35.06550 -34.41151 -32.02412 -29.18346 -28.95317 -28.19620 -26.60424 -25.45104 -24.25040 -21.17640 -20.96867 -20.03885 -19.55227 -18.57492 -17.19685 -16.95040 -16.40679 -16.12085 -15.26869 -15.09691 -14.97095 -14.67804 -14.66125 -14.52879 -14.10869 -13.75033 -13.30799 -13.17060 -12.83388 -12.18619 -12.04868 -11.90554 -11.80095 -11.49673 -11.31548 -11.25196 -11.21794 -11.15281 -11.07502 -10.97734 -10.92373 -10.75369 -10.71092 -10.52117 -10.43705 -10.09592 -9.74797 -9.62696 -9.15342 -9.00600 -8.52788 -8.08559 -6.12662 -4.25733 1.10378 3.30803 3.39320 3.40643 3.47896 3.72654 4.30862 4.35229 4.39672 4.53725 4.63469 4.90491 4.96968 5.09940 5.15923 5.17853 5.22863 5.24303 5.25300 5.36202 5.42281 5.49854 5.60978 5.62634 5.69713 5.70259 5.77864 5.84585 5.86684 5.91869 6.06471 6.16627 6.17886 6.26774 6.37286 6.61907 6.72184 6.99420 7.10828 7.21695 7.36542 7.45862 7.80579 8.19703 8.80941 9.47411 10.93883 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.003981 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.807800 B = 7032.259527 C = 7208.528227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.371 6.371 3 C 0.109 3.891 4 C 0.095 3.905 5 N -1.126 6.126 6 S 2.612 3.388 7 O -0.973 6.973 8 O -0.948 6.948 9 C -0.556 4.556 10 C 0.039 3.961 11 C -0.518 4.518 12 H 0.068 0.932 13 C 0.083 3.917 14 N -0.874 5.874 15 Si 0.893 3.107 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.279 1.279 19 C -0.207 4.207 20 C -0.134 4.134 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.151 4.151 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.415 0.585 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -0.560 -18.602 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.290 6.290 3 C 0.068 3.932 4 C -0.032 4.032 5 N -0.884 5.884 6 S 2.708 3.292 7 O -0.963 6.963 8 O -0.938 6.938 9 C -0.689 4.689 10 C 0.037 3.963 11 C -0.555 4.555 12 H 0.087 0.913 13 C -0.122 4.122 14 N -0.509 5.509 15 Si 0.720 3.280 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.205 1.205 19 C -0.244 4.244 20 C -0.173 4.173 21 C -0.149 4.149 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.189 4.189 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.249 0.751 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.215 -0.615 -18.118 18.263 hybrid contribution -0.903 -0.674 0.572 1.264 sum 1.312 -1.289 -17.546 17.642 Atomic orbital electron populations 1.22837 0.81504 1.02913 1.00341 1.87978 1.19521 1.26795 1.94720 1.22384 0.94678 0.83432 0.92738 1.21870 0.99655 0.95661 0.86040 1.55883 1.87230 1.20334 1.24973 1.04984 0.78038 0.74364 0.71767 1.93485 1.62980 1.56260 1.83621 1.93551 1.81110 1.55496 1.63667 1.29993 1.21379 1.11079 1.06457 1.18283 1.01405 0.85594 0.91049 1.20580 0.95641 1.29572 1.09750 0.91347 1.24952 0.94728 0.95108 0.97453 1.70008 1.03059 1.41431 1.36446 0.86495 0.80169 0.80204 0.81116 1.19086 1.20997 1.20479 1.23163 1.00956 0.99947 1.00325 1.22497 0.89778 1.04301 1.00765 1.22402 0.91946 1.03709 0.96818 1.22521 0.98927 0.99033 0.95655 1.22315 0.94913 0.99333 0.99402 1.22811 0.98925 1.00602 0.96598 0.93234 0.93942 0.89653 0.92034 0.89186 0.75053 0.85278 0.88596 0.92812 0.89599 0.91066 0.91802 0.89244 0.89491 0.90196 0.91279 0.91271 0.91568 0.91206 0.90418 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.34 101.05 1.04 1.24 16 2 O -0.37 -4.35 9.70 -35.23 -0.34 -4.69 16 3 C 0.11 1.20 0.71 -89.51 -0.06 1.13 16 4 C 0.10 1.20 4.36 -4.05 -0.02 1.18 16 5 N -1.13 -17.20 5.56 -10.61 -0.06 -17.26 16 6 S 2.61 53.08 5.06 -107.50 -0.54 52.53 16 7 O -0.97 -21.33 17.43 -57.54 -1.00 -22.33 16 8 O -0.95 -22.97 17.48 -57.54 -1.01 -23.98 16 9 C -0.56 -11.55 5.97 37.16 0.22 -11.33 16 10 C 0.04 0.95 1.51 -155.65 -0.24 0.71 16 11 C -0.52 -14.30 7.74 -34.44 -0.27 -14.57 16 12 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 13 C 0.08 2.28 5.43 -17.82 -0.10 2.19 16 14 N -0.87 -24.22 12.64 55.43 0.70 -23.52 16 15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 C -0.21 -4.52 9.94 -26.69 -0.27 -4.79 16 20 C -0.13 -3.07 9.16 -26.69 -0.24 -3.31 16 21 C -0.11 -1.23 5.87 -25.03 -0.15 -1.37 16 22 C -0.12 -1.10 6.91 -24.70 -0.17 -1.27 16 23 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 24 C -0.15 -1.34 5.71 -25.61 -0.15 -1.48 16 25 H 0.05 0.49 6.37 -51.93 -0.33 0.16 16 26 H 0.04 0.34 6.47 -51.93 -0.34 0.00 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 29 H 0.09 1.13 7.51 -51.93 -0.39 0.74 16 30 H 0.42 6.01 8.18 -34.47 -0.28 5.73 16 31 H 0.13 2.77 8.14 -51.93 -0.42 2.35 16 32 H 0.10 1.64 8.11 -51.93 -0.42 1.22 16 33 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 38 H 0.09 1.02 7.81 -51.93 -0.41 0.61 16 39 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.65 6.33 -51.93 -0.33 0.32 16 45 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -32.75 369.98 -9.69 -42.44 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.43 Total: 7.20 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: -0.56 Total: -32.82 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.64 Total: -40.78 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -2.35 Total: -51.01 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.54 Total: 52.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.75 -9.69 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451607440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.719 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds