Wall clock time and date at job start Tue Mar 31 2020 11:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 114.00169 * 2 1 4 4 C 1.52997 * 110.01625 * 62.70985 * 3 2 1 5 5 N 1.46496 * 109.47690 * 56.38155 * 4 3 2 6 6 S 1.65600 * 120.00362 * 157.91691 * 5 4 3 7 7 O 1.42106 * 104.27624 * 308.93493 * 6 5 4 8 8 O 1.42096 * 104.27878 * 181.07399 * 6 5 4 9 9 C 1.81405 * 104.44318 * 65.00426 * 6 5 4 10 10 C 1.53002 * 109.46822 * 185.81430 * 9 6 5 11 11 C 1.50707 * 115.55090 * 302.02716 * 10 9 6 12 12 H 1.07998 * 119.99757 * 94.94942 * 11 10 9 13 13 C 1.37877 * 119.99755 * 274.67591 * 11 10 9 14 14 N 1.31515 * 119.99966 * 355.52681 * 13 11 10 15 15 Si 1.86802 * 119.99822 * 175.52958 * 13 11 10 16 16 H 1.48500 * 109.47210 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47151 * 120.00034 * 15 13 11 18 18 H 1.48492 * 109.47045 * 240.00067 * 15 13 11 19 19 C 1.53001 * 117.49936 * 87.69520 * 10 9 6 20 20 C 1.53000 * 117.50141 * 156.35448 * 10 9 6 21 21 C 1.54265 * 110.03050 * 184.09920 * 3 2 1 22 22 C 1.54962 * 104.16088 * 95.75523 * 21 3 2 23 23 C 1.54889 * 102.77971 * 37.88521 * 22 21 3 24 24 C 1.53869 * 110.03062 * 301.31696 * 3 2 1 25 25 H 1.09002 * 109.47164 * 305.09486 * 1 2 3 26 26 H 1.08999 * 109.47110 * 65.09091 * 1 2 3 27 27 H 1.08996 * 109.47233 * 185.09425 * 1 2 3 28 28 H 1.09004 * 109.47053 * 296.37908 * 4 3 2 29 29 H 1.09004 * 109.46867 * 176.38924 * 4 3 2 30 30 H 0.97008 * 119.99646 * 337.92730 * 5 4 3 31 31 H 1.08991 * 109.47150 * 65.81897 * 9 6 5 32 32 H 1.08992 * 109.47162 * 305.81100 * 9 6 5 33 33 H 0.96997 * 119.99880 * 184.99552 * 14 13 11 34 34 H 1.09005 * 117.49833 * 215.00343 * 19 10 9 35 35 H 1.09002 * 117.49902 * 0.02562 * 19 10 9 36 36 H 1.09000 * 117.49477 * 359.97438 * 20 10 9 37 37 H 1.09003 * 117.49961 * 144.97563 * 20 10 9 38 38 H 1.08998 * 110.48432 * 214.39798 * 21 3 2 39 39 H 1.08998 * 110.49184 * 337.04349 * 21 3 2 40 40 H 1.09002 * 110.71912 * 279.56954 * 22 21 3 41 41 H 1.08998 * 110.76795 * 156.22168 * 22 21 3 42 42 H 1.08997 * 110.48953 * 203.41253 * 23 22 21 43 43 H 1.08993 * 110.48712 * 80.76069 * 23 22 21 44 44 H 1.09005 * 110.03264 * 359.94734 * 24 3 2 45 45 H 1.08995 * 110.03695 * 121.38344 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6211 2.0520 1.2775 5 7 2.0288 1.2670 2.4453 6 16 2.2482 2.0117 3.9081 7 8 3.1117 3.1029 3.6198 8 8 2.6565 0.9641 4.7769 9 6 0.5972 2.6096 4.3637 10 6 0.6928 3.4486 5.6396 11 6 1.2778 2.7456 6.8375 12 1 2.3299 2.8438 7.0607 13 6 0.4686 1.9817 7.6516 14 7 -0.8278 1.9372 7.4349 15 14 1.2138 1.0102 9.0624 16 1 2.6823 1.2285 9.0925 17 1 0.6198 1.4654 10.3450 18 1 0.9315 -0.4351 8.8716 19 6 0.9881 4.9416 5.4829 20 6 -0.4114 4.4768 5.8934 21 6 3.5458 1.2002 -0.1036 22 6 3.8361 1.3680 -1.6165 23 6 2.8035 2.4393 -2.0467 24 6 1.5382 2.0926 -1.2350 25 1 -0.3633 0.5908 0.8408 26 1 -0.3633 0.4328 -0.9321 27 1 -0.3633 -1.0236 0.0912 28 1 0.5413 2.1993 1.2977 29 1 2.1203 3.0208 1.2986 30 1 2.1703 0.3110 2.3617 31 1 -0.0622 1.7592 4.5367 32 1 0.1967 3.2216 3.5556 33 1 -1.4061 1.4592 8.0497 34 1 1.6054 5.4154 6.2462 35 1 1.1138 5.3263 4.4708 36 1 -1.2057 4.5558 5.1512 37 1 -0.7150 4.6445 6.9268 38 1 4.0222 1.9975 0.4668 39 1 3.8858 0.2250 0.2450 40 1 3.6657 0.4318 -2.1481 41 1 4.8532 1.7252 -1.7776 42 1 2.6024 2.3679 -3.1156 43 1 3.1596 3.4370 -1.7904 44 1 0.8664 1.4785 -1.8349 45 1 1.0319 3.0065 -0.9243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451607440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:12 Heat of formation + Delta-G solvation = -127.980268 kcal Electronic energy + Delta-G solvation = -26276.324693 eV Core-core repulsion = 22613.466188 eV Total energy + Delta-G solvation = -3662.858504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.77460 -38.55635 -37.92660 -36.78451 -36.58374 -35.57751 -34.08840 -29.97273 -29.89211 -29.77633 -27.50417 -27.38087 -25.15227 -22.94797 -21.71943 -21.51167 -20.74425 -20.10074 -18.48361 -18.37524 -18.01481 -17.16692 -16.87270 -16.57253 -16.34663 -15.90302 -15.60943 -15.45164 -15.42354 -15.31701 -14.89053 -14.07676 -13.85831 -13.76942 -13.67157 -13.30835 -13.09730 -12.92279 -12.89984 -12.86717 -12.72491 -12.45037 -12.31135 -12.21581 -12.17645 -11.96619 -11.90401 -11.86450 -11.58859 -11.46736 -11.37915 -11.00234 -10.67925 -10.51264 -10.25507 -9.85496 -8.20943 -6.37288 -0.50094 1.33830 1.39437 1.50110 2.03255 2.38138 2.87105 2.99111 3.05799 3.34004 3.45607 3.54746 3.61093 3.78280 3.99709 4.22193 4.24637 4.30172 4.38589 4.46901 4.50135 4.53589 4.55708 4.60660 4.63176 4.78222 4.84453 4.88589 4.89624 4.97219 4.99562 5.02835 5.07158 5.16156 5.22556 5.25297 5.33316 5.43648 5.49950 5.64517 5.69979 6.10371 6.20634 6.35243 6.70110 7.36639 8.85142 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.003981 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.807800 B = 7032.259527 C = 7208.528227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.388 6.388 3 C 0.109 3.891 4 C 0.082 3.918 5 N -1.112 6.112 6 S 2.627 3.373 7 O -0.992 6.992 8 O -0.996 6.996 9 C -0.552 4.552 10 C 0.003 3.997 11 C -0.536 4.536 12 H 0.046 0.954 13 C 0.045 3.955 14 N -0.890 5.890 15 Si 0.931 3.069 16 H -0.275 1.275 17 H -0.268 1.268 18 H -0.277 1.277 19 C -0.193 4.193 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.148 4.148 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.420 0.580 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -0.002 -20.774 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.307 6.307 3 C 0.068 3.932 4 C -0.044 4.044 5 N -0.873 5.873 6 S 2.724 3.276 7 O -0.982 6.982 8 O -0.986 6.986 9 C -0.684 4.684 10 C 0.001 3.999 11 C -0.573 4.573 12 H 0.065 0.935 13 C -0.158 4.158 14 N -0.527 5.527 15 Si 0.757 3.243 16 H -0.200 1.200 17 H -0.193 1.193 18 H -0.203 1.203 19 C -0.230 4.230 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.187 4.187 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.256 0.744 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.379 -0.051 -20.282 20.329 hybrid contribution -0.628 -0.840 1.193 1.588 sum 0.751 -0.891 -19.089 19.125 Atomic orbital electron populations 1.22998 0.80484 1.03582 1.01211 1.87963 1.20734 1.27204 1.94824 1.22422 0.94524 0.83449 0.92813 1.22259 1.01085 0.95600 0.85480 1.55396 1.87130 1.20592 1.24171 1.04243 0.77750 0.73529 0.72093 1.93453 1.63709 1.56977 1.84085 1.93482 1.82092 1.56953 1.66097 1.29857 1.21475 1.10940 1.06177 1.18427 1.02919 0.86957 0.91563 1.20750 0.94811 1.30266 1.11468 0.93535 1.25476 0.95230 0.95860 0.99269 1.70038 1.03419 1.42045 1.37158 0.85904 0.79138 0.79310 0.79949 1.19957 1.19350 1.20258 1.23225 0.99933 0.98063 1.01774 1.22430 0.90658 1.03666 1.00197 1.22449 0.92327 1.02603 0.98379 1.22508 0.99810 0.99555 0.93903 1.22337 0.94143 0.99072 1.00217 1.22815 0.99460 1.00836 0.95539 0.93555 0.92031 0.89028 0.89827 0.88992 0.74441 0.86184 0.84563 0.92550 0.90232 0.88044 0.89424 0.91605 0.90598 0.91418 0.91190 0.90500 0.90024 0.90852 0.89549 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 10.34 113.37 1.17 1.39 16 2 O -0.39 -8.41 9.70 -148.98 -1.45 -9.85 16 3 C 0.11 2.19 0.71 -10.07 -0.01 2.18 16 4 C 0.08 1.89 4.36 86.38 0.38 2.26 16 5 N -1.11 -32.88 5.56 -187.49 -1.04 -33.92 16 6 S 2.63 105.87 5.06 -56.49 -0.29 105.58 16 7 O -0.99 -42.91 17.43 -127.65 -2.22 -45.13 16 8 O -1.00 -49.31 17.48 -127.65 -2.23 -51.55 16 9 C -0.55 -22.14 5.97 71.98 0.43 -21.71 16 10 C 0.00 0.17 1.51 -52.92 -0.08 0.09 16 11 C -0.54 -29.98 7.74 25.60 0.20 -29.78 16 12 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 13 C 0.04 2.49 5.43 84.65 0.46 2.95 16 14 N -0.89 -49.39 12.64 21.45 0.27 -49.12 16 15 Si 0.93 45.15 29.54 68.60 2.03 47.18 16 16 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 C -0.19 -8.13 9.94 30.62 0.30 -7.82 16 20 C -0.13 -5.79 9.16 30.62 0.28 -5.51 16 21 C -0.12 -2.53 5.87 31.69 0.19 -2.34 16 22 C -0.12 -1.91 6.91 31.91 0.22 -1.69 16 23 C -0.12 -1.60 6.83 31.67 0.22 -1.38 16 24 C -0.15 -2.17 5.71 31.32 0.18 -1.99 16 25 H 0.05 0.80 6.37 -2.39 -0.02 0.79 16 26 H 0.06 0.79 6.47 -2.39 -0.02 0.78 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.57 6.72 -2.38 -0.02 1.55 16 29 H 0.09 2.10 7.51 -2.38 -0.02 2.08 16 30 H 0.42 11.97 8.18 -96.74 -0.79 11.18 16 31 H 0.12 5.05 8.14 -2.40 -0.02 5.03 16 32 H 0.14 4.22 8.11 -2.39 -0.02 4.20 16 33 H 0.27 13.95 8.32 -92.71 -0.77 13.18 16 34 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 35 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.08 1.74 7.81 -2.39 -0.02 1.72 16 39 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.09 1.13 6.33 -2.38 -0.02 1.12 16 45 H 0.09 1.07 7.67 -2.39 -0.02 1.05 16 Total: -1.00 -70.48 369.98 -0.81 -71.29 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.19 Total: 28.89 kcal Atomic # 6 Polarization: -67.29 SS G_CDS: 3.93 Total: -63.35 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -0.77 Total: -83.04 kcal Atomic # 8 Polarization: -100.63 SS G_CDS: -5.90 Total: -106.53 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 105.87 SS G_CDS: -0.29 Total: 105.58 kcal Total: -70.48 -0.81 -71.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451607440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.693 kcal (2) G-P(sol) polarization free energy of solvation -70.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds