Wall clock time and date at job start Tue Mar 31 2020 11:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99991 * 2 1 4 4 H 1.09003 * 112.95171 * 338.09450 * 3 2 1 5 5 C 1.53953 * 113.66180 * 109.50328 * 3 2 1 6 6 C 1.53954 * 87.38056 * 89.77937 * 5 3 2 7 7 H 1.08997 * 113.66084 * 139.16519 * 6 5 3 8 8 N 1.46495 * 113.66103 * 270.21892 * 6 5 3 9 9 C 1.46507 * 119.99907 * 12.84899 * 8 6 5 10 10 S 1.65599 * 120.00334 * 192.84947 * 8 6 5 11 11 O 1.42095 * 104.28063 * 206.07243 * 10 8 6 12 12 O 1.42106 * 104.27193 * 333.93168 * 10 8 6 13 13 C 1.81400 * 104.45106 * 89.99876 * 10 8 6 14 14 C 1.52989 * 109.47343 * 180.02562 * 13 10 8 15 15 C 1.50704 * 109.47274 * 180.02562 * 14 13 10 16 16 H 1.07994 * 119.99876 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.31525 * 119.99880 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46975 * 90.00401 * 19 17 15 21 21 H 1.48508 * 109.47126 * 210.00003 * 19 17 15 22 22 H 1.48490 * 109.47106 * 329.99981 * 19 17 15 23 23 C 1.52905 * 86.78422 * 24.69316 * 6 5 3 24 24 C 1.52900 * 121.13693 * 209.38590 * 23 6 5 25 25 C 1.53953 * 86.78477 * 209.38069 * 24 23 6 26 26 C 1.52913 * 121.13917 * 100.82105 * 23 6 5 27 27 H 1.09007 * 109.46947 * 60.00195 * 1 2 3 28 28 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47537 * 300.00356 * 1 2 3 30 30 H 1.08995 * 113.58123 * 335.13213 * 5 3 2 31 31 H 1.09007 * 113.57807 * 204.41957 * 5 3 2 32 32 H 1.09008 * 109.46510 * 95.25559 * 9 8 6 33 33 H 1.09001 * 109.46946 * 215.24942 * 9 8 6 34 34 H 1.08991 * 109.47348 * 335.25484 * 9 8 6 35 35 H 1.09000 * 109.47292 * 300.00517 * 13 10 8 36 36 H 1.09006 * 109.47041 * 60.00395 * 13 10 8 37 37 H 1.09003 * 109.47008 * 299.99745 * 14 13 10 38 38 H 1.08997 * 109.47253 * 60.00152 * 14 13 10 39 39 H 0.97004 * 119.99520 * 180.02562 * 18 17 15 40 40 H 1.09006 * 113.66669 * 323.85162 * 24 23 6 41 41 H 1.09001 * 113.66718 * 94.91084 * 24 23 6 42 42 H 1.08991 * 113.57824 * 270.12594 * 25 24 23 43 43 H 1.09003 * 113.58144 * 139.33411 * 25 24 23 44 44 H 1.08998 * 113.66315 * 265.08946 * 26 23 6 45 45 H 1.08999 * 113.65797 * 36.04879 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3323 2.0725 -0.3745 5 6 2.6916 1.6784 1.3292 6 6 3.9833 1.0664 0.7572 7 1 4.8794 1.6428 0.9869 8 7 4.1340 -0.3623 1.0438 9 6 2.9965 -1.1308 1.5554 10 16 5.5902 -1.1087 0.7895 11 8 5.2511 -2.4690 0.5578 12 8 6.2132 -0.3267 -0.2203 13 6 6.4709 -0.9318 2.3655 14 6 7.8481 -1.5891 2.2567 15 6 8.5795 -1.4427 3.5662 16 1 8.1093 -0.9314 4.3931 17 6 9.8495 -1.9604 3.7082 18 7 10.4224 -2.5825 2.7010 19 14 10.7563 -1.7782 5.3311 20 1 10.4530 -2.9429 6.2011 21 1 12.2183 -1.7175 5.0772 22 1 10.3188 -0.5295 6.0052 23 6 3.4052 1.3568 -0.6282 24 6 3.7633 0.4859 -1.8328 25 6 3.5485 1.7426 -2.6957 26 6 3.8621 2.5715 -1.4369 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.2961 1.1373 2.1888 31 1 2.7564 2.7531 1.4994 32 1 2.4866 -1.6208 0.7258 33 1 3.3533 -1.8837 2.2582 34 1 2.3033 -0.4598 2.0625 35 1 6.5911 0.1264 2.5978 36 1 5.8989 -1.4150 3.1576 37 1 7.7283 -2.6473 2.0243 38 1 8.4200 -1.1056 1.4647 39 1 11.3157 -2.9471 2.8010 40 1 4.7940 0.1312 -1.8253 41 1 3.0423 -0.3078 -2.0287 42 1 2.5243 1.8583 -3.0500 43 1 4.2870 1.8582 -3.4891 44 1 3.2199 3.4440 -1.3165 45 1 4.9201 2.8041 -1.3168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451995394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:37 Heat of formation + Delta-G solvation = -60.390052 kcal Electronic energy + Delta-G solvation = -26531.431917 eV Core-core repulsion = 22871.504344 eV Total energy + Delta-G solvation = -3659.927572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04287 -37.20132 -36.47780 -35.80083 -35.30532 -33.85002 -32.60598 -31.11414 -27.32227 -26.67137 -25.63663 -25.36111 -24.48866 -23.90954 -21.56769 -20.70958 -18.85750 -17.88230 -17.47443 -16.81642 -16.28547 -16.12524 -15.83775 -15.68421 -15.22229 -14.80362 -14.53859 -14.40449 -14.01506 -13.61081 -13.32772 -12.83057 -12.54956 -12.50643 -12.38444 -12.30277 -12.17563 -11.70665 -11.62869 -11.46068 -11.39624 -11.27402 -11.10625 -11.05980 -10.92545 -10.79288 -10.49858 -10.34612 -10.30741 -10.23086 -10.05056 -9.69455 -9.46508 -9.19765 -8.47943 -8.46676 -6.09976 -4.15425 0.86028 3.10299 3.27514 3.33527 3.36425 3.44261 4.33222 4.33627 4.38815 4.47717 4.55302 4.64755 4.75025 4.78586 4.89631 5.07176 5.14789 5.17457 5.21887 5.25036 5.40114 5.43790 5.48401 5.54770 5.63763 5.70263 5.74666 5.77328 5.83169 5.92288 5.95778 6.00952 6.23838 6.27638 6.35476 6.47554 6.54435 6.60496 6.89623 7.09418 7.33483 7.39911 7.83125 8.20767 8.87964 9.49104 11.01080 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022730 B = 0.003636 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.564983 B = 7699.542695 C = 7986.662926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.090 3.910 4 H 0.072 0.928 5 C -0.166 4.166 6 C 0.153 3.847 7 H 0.095 0.905 8 N -0.984 5.984 9 C 0.103 3.897 10 S 2.592 3.408 11 O -0.963 6.963 12 O -0.960 6.960 13 C -0.593 4.593 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.105 4.105 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.715 10.596 -5.343 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.032 3.968 4 H 0.089 0.911 5 C -0.205 4.205 6 C 0.046 3.954 7 H 0.113 0.887 8 N -0.819 5.819 9 C -0.042 4.042 10 S 2.691 3.309 11 O -0.953 6.953 12 O -0.951 6.951 13 C -0.726 4.726 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.122 4.122 24 C -0.164 4.164 25 C -0.177 4.177 26 C -0.142 4.142 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.226 9.892 -6.217 23.358 hybrid contribution 0.262 0.496 1.593 1.689 sum -19.963 10.388 -4.624 22.974 Atomic orbital electron populations 1.22803 0.81849 1.02718 0.99677 1.88151 1.18745 1.25598 1.94305 1.22739 0.93213 0.85254 0.95642 0.91051 1.23844 0.96827 1.01396 0.98436 1.21336 0.98115 0.81386 0.94558 0.88697 1.57341 1.27035 1.16381 1.81102 1.21559 0.88862 0.94774 0.98982 1.05672 0.73170 0.73800 0.78296 1.93536 1.82135 1.34455 1.85202 1.93505 1.75803 1.70852 1.54897 1.30514 1.12495 1.10107 1.19481 1.18948 0.86385 0.95938 0.99779 1.21014 1.00191 1.37314 0.97382 0.92088 1.25072 0.97453 0.94973 0.96996 1.69965 1.15222 1.36888 1.30804 0.86474 0.78908 0.78575 0.83361 1.20462 1.20995 1.19768 1.23203 0.95056 0.99185 0.94729 1.22745 1.03553 0.96285 0.93832 1.22813 1.01027 0.97257 0.96650 1.22551 1.01946 0.94744 0.94997 0.94322 0.89601 0.94185 0.89469 0.88376 0.91406 0.92672 0.90864 0.86441 0.86474 0.94968 0.94876 0.92551 0.87821 0.91392 0.90919 0.91418 0.91606 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.86 101.05 1.10 1.29 16 2 O -0.35 -3.71 5.92 -35.23 -0.21 -3.92 16 3 C 0.09 0.88 4.16 -26.19 -0.11 0.77 16 4 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 5 C -0.17 -1.55 7.23 -25.75 -0.19 -1.74 16 6 C 0.15 1.93 3.73 -67.48 -0.25 1.68 16 7 H 0.10 1.17 8.13 -51.93 -0.42 0.75 16 8 N -0.98 -14.45 3.04 -114.13 -0.35 -14.80 16 9 C 0.10 1.33 8.06 59.85 0.48 1.82 16 10 S 2.59 49.24 5.39 -107.50 -0.58 48.66 16 11 O -0.96 -21.13 17.19 -57.54 -0.99 -22.12 16 12 O -0.96 -19.85 15.04 -57.54 -0.87 -20.72 16 13 C -0.59 -11.90 6.11 37.15 0.23 -11.67 16 14 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 15 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.12 -1.41 0.89 -154.63 -0.14 -1.55 16 24 C -0.13 -1.75 7.36 -26.29 -0.19 -1.94 16 25 C -0.14 -1.52 8.08 -25.75 -0.21 -1.72 16 26 C -0.10 -1.07 7.84 -26.28 -0.21 -1.28 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.79 5.93 -51.93 -0.31 0.48 16 31 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.07 0.93 6.63 -51.92 -0.34 0.58 16 33 H 0.05 0.70 7.98 -51.93 -0.41 0.29 16 34 H 0.07 0.77 4.78 -51.93 -0.25 0.52 16 35 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 36 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.10 1.73 5.91 -51.93 -0.31 1.43 16 41 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -34.36 363.45 -9.31 -43.67 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.48 Total: 0.56 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -0.03 Total: -27.13 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.39 Total: -40.88 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -2.06 Total: -46.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 49.24 SS G_CDS: -0.58 Total: 48.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.36 -9.31 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.719 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds