Wall clock time and date at job start Tue Mar 31 2020 11:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99991 * 2 1 4 4 H 1.09003 * 112.95171 * 338.09450 * 3 2 1 5 5 C 1.53953 * 113.66180 * 109.50328 * 3 2 1 6 6 C 1.53954 * 87.38056 * 89.77937 * 5 3 2 7 7 H 1.08997 * 113.66084 * 139.16519 * 6 5 3 8 8 N 1.46495 * 113.66103 * 270.21892 * 6 5 3 9 9 C 1.46507 * 119.99907 * 12.84899 * 8 6 5 10 10 S 1.65599 * 120.00334 * 192.84947 * 8 6 5 11 11 O 1.42095 * 104.28063 * 206.07243 * 10 8 6 12 12 O 1.42106 * 104.27193 * 333.93168 * 10 8 6 13 13 C 1.81400 * 104.45106 * 89.99876 * 10 8 6 14 14 C 1.52989 * 109.47343 * 180.02562 * 13 10 8 15 15 C 1.50704 * 109.47274 * 180.02562 * 14 13 10 16 16 H 1.07994 * 119.99876 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.31525 * 119.99880 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46975 * 90.00401 * 19 17 15 21 21 H 1.48508 * 109.47126 * 210.00003 * 19 17 15 22 22 H 1.48490 * 109.47106 * 329.99981 * 19 17 15 23 23 C 1.52905 * 86.78422 * 24.69316 * 6 5 3 24 24 C 1.52900 * 121.13693 * 209.38590 * 23 6 5 25 25 C 1.53953 * 86.78477 * 209.38069 * 24 23 6 26 26 C 1.52913 * 121.13917 * 100.82105 * 23 6 5 27 27 H 1.09007 * 109.46947 * 60.00195 * 1 2 3 28 28 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47537 * 300.00356 * 1 2 3 30 30 H 1.08995 * 113.58123 * 335.13213 * 5 3 2 31 31 H 1.09007 * 113.57807 * 204.41957 * 5 3 2 32 32 H 1.09008 * 109.46510 * 95.25559 * 9 8 6 33 33 H 1.09001 * 109.46946 * 215.24942 * 9 8 6 34 34 H 1.08991 * 109.47348 * 335.25484 * 9 8 6 35 35 H 1.09000 * 109.47292 * 300.00517 * 13 10 8 36 36 H 1.09006 * 109.47041 * 60.00395 * 13 10 8 37 37 H 1.09003 * 109.47008 * 299.99745 * 14 13 10 38 38 H 1.08997 * 109.47253 * 60.00152 * 14 13 10 39 39 H 0.97004 * 119.99520 * 180.02562 * 18 17 15 40 40 H 1.09006 * 113.66669 * 323.85162 * 24 23 6 41 41 H 1.09001 * 113.66718 * 94.91084 * 24 23 6 42 42 H 1.08991 * 113.57824 * 270.12594 * 25 24 23 43 43 H 1.09003 * 113.58144 * 139.33411 * 25 24 23 44 44 H 1.08998 * 113.66315 * 265.08946 * 26 23 6 45 45 H 1.08999 * 113.65797 * 36.04879 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3323 2.0725 -0.3745 5 6 2.6916 1.6784 1.3292 6 6 3.9833 1.0664 0.7572 7 1 4.8794 1.6428 0.9869 8 7 4.1340 -0.3623 1.0438 9 6 2.9965 -1.1308 1.5554 10 16 5.5902 -1.1087 0.7895 11 8 5.2511 -2.4690 0.5578 12 8 6.2132 -0.3267 -0.2203 13 6 6.4709 -0.9318 2.3655 14 6 7.8481 -1.5891 2.2567 15 6 8.5795 -1.4427 3.5662 16 1 8.1093 -0.9314 4.3931 17 6 9.8495 -1.9604 3.7082 18 7 10.4224 -2.5825 2.7010 19 14 10.7563 -1.7782 5.3311 20 1 10.4530 -2.9429 6.2011 21 1 12.2183 -1.7175 5.0772 22 1 10.3188 -0.5295 6.0052 23 6 3.4052 1.3568 -0.6282 24 6 3.7633 0.4859 -1.8328 25 6 3.5485 1.7426 -2.6957 26 6 3.8621 2.5715 -1.4369 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.2961 1.1373 2.1888 31 1 2.7564 2.7531 1.4994 32 1 2.4866 -1.6208 0.7258 33 1 3.3533 -1.8837 2.2582 34 1 2.3033 -0.4598 2.0625 35 1 6.5911 0.1264 2.5978 36 1 5.8989 -1.4150 3.1576 37 1 7.7283 -2.6473 2.0243 38 1 8.4200 -1.1056 1.4647 39 1 11.3157 -2.9471 2.8010 40 1 4.7940 0.1312 -1.8253 41 1 3.0423 -0.3078 -2.0287 42 1 2.5243 1.8583 -3.0500 43 1 4.2870 1.8582 -3.4891 44 1 3.2199 3.4440 -1.3165 45 1 4.9201 2.8041 -1.3168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451995394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:36 Heat of formation + Delta-G solvation = -83.989459 kcal Electronic energy + Delta-G solvation = -26532.455264 eV Core-core repulsion = 22871.504344 eV Total energy + Delta-G solvation = -3660.950920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.89681 -38.21135 -37.86939 -36.98086 -36.76753 -35.91633 -33.56234 -33.14573 -28.15319 -27.61717 -27.45472 -26.32967 -25.30900 -24.86418 -23.49881 -21.66231 -20.08045 -19.23013 -18.78239 -18.34941 -17.51422 -17.30821 -17.07554 -16.61800 -16.50421 -16.40423 -15.99671 -15.35434 -15.06967 -14.82685 -14.65764 -14.40354 -13.85404 -13.76184 -13.58504 -13.40357 -13.11603 -13.05302 -12.99981 -12.96113 -12.91348 -12.77072 -12.57163 -12.29121 -12.23435 -12.13668 -11.86251 -11.83447 -11.68415 -11.38823 -11.16281 -11.04123 -10.86826 -10.66544 -10.20712 -9.61899 -8.27463 -6.42428 -0.69295 1.39721 1.42227 1.53454 1.77585 2.37168 2.72946 2.88275 3.05449 3.17650 3.50556 3.57702 3.71144 3.85772 3.91279 3.97769 4.06126 4.07213 4.20087 4.39141 4.55978 4.60836 4.66194 4.70204 4.70632 4.75124 4.82478 4.85802 4.95194 4.99629 5.01297 5.09416 5.12564 5.19747 5.21810 5.23237 5.28043 5.39018 5.51073 5.65928 5.66414 5.83169 6.03835 6.45619 6.70893 7.27948 8.84975 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022730 B = 0.003636 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.564983 B = 7699.542695 C = 7986.662926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.376 6.376 3 C 0.095 3.905 4 H 0.098 0.902 5 C -0.147 4.147 6 C 0.125 3.875 7 H 0.093 0.907 8 N -0.972 5.972 9 C 0.099 3.901 10 S 2.609 3.391 11 O -0.999 6.999 12 O -0.983 6.983 13 C -0.590 4.590 14 C 0.022 3.978 15 C -0.541 4.541 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.977 3.023 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.256 1.256 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.132 4.132 26 C -0.096 4.096 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.002 0.998 38 H 0.006 0.994 39 H 0.268 0.732 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.060 13.130 -3.484 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.294 6.294 3 C 0.037 3.963 4 H 0.116 0.884 5 C -0.186 4.186 6 C 0.019 3.981 7 H 0.111 0.889 8 N -0.809 5.809 9 C -0.045 4.045 10 S 2.707 3.293 11 O -0.989 6.989 12 O -0.973 6.973 13 C -0.722 4.722 14 C -0.016 4.016 15 C -0.579 4.579 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.800 3.200 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.180 1.180 23 C -0.127 4.127 24 C -0.182 4.182 25 C -0.169 4.169 26 C -0.134 4.134 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.575 12.428 -4.354 26.136 hybrid contribution 0.925 -0.313 0.918 1.341 sum -21.650 12.115 -3.435 25.046 Atomic orbital electron populations 1.22945 0.80201 1.03335 1.00854 1.88118 1.20590 1.26334 1.94405 1.22768 0.92465 0.85683 0.95385 0.88382 1.23855 0.93602 1.02860 0.98260 1.21787 1.00120 0.79831 0.96389 0.88900 1.56908 1.25339 1.17670 1.80972 1.21753 0.88487 0.95377 0.98881 1.04840 0.73902 0.72996 0.77517 1.93480 1.82953 1.36910 1.85551 1.93474 1.77130 1.71075 1.55597 1.30410 1.09422 1.10986 1.21388 1.18799 0.89691 0.94500 0.98657 1.21508 1.00835 1.37322 0.98284 0.90626 1.26163 0.98576 0.94349 1.01191 1.70118 1.15796 1.38030 1.33490 0.85275 0.77225 0.79333 0.78200 1.19513 1.20671 1.18014 1.23384 0.96983 0.98956 0.93397 1.22694 1.00891 0.97422 0.97217 1.22812 1.02097 0.95347 0.96636 1.22503 1.01893 0.95280 0.93718 0.93528 0.89430 0.92514 0.88707 0.85463 0.92296 0.92805 0.87614 0.84225 0.84556 0.97973 0.97593 0.92329 0.91666 0.92737 0.88884 0.91813 0.88314 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.86 113.37 1.23 1.50 16 2 O -0.38 -7.04 5.92 -148.98 -0.88 -7.93 16 3 C 0.10 1.53 4.16 30.94 0.13 1.66 16 4 H 0.10 1.09 7.90 -2.39 -0.02 1.07 16 5 C -0.15 -2.14 7.23 31.23 0.23 -1.91 16 6 C 0.13 2.94 3.73 45.28 0.17 3.11 16 7 H 0.09 2.19 8.13 -2.39 -0.02 2.17 16 8 N -0.97 -28.01 3.04 -514.99 -1.56 -29.57 16 9 C 0.10 2.44 8.06 127.77 1.03 3.47 16 10 S 2.61 102.82 5.39 -56.49 -0.30 102.52 16 11 O -1.00 -46.00 17.19 -127.65 -2.19 -48.20 16 12 O -0.98 -42.86 15.04 -127.65 -1.92 -44.78 16 13 C -0.59 -24.02 6.11 71.98 0.44 -23.58 16 14 C 0.02 1.23 4.98 29.85 0.15 1.38 16 15 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 16 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 18 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 19 Si 0.98 43.85 29.54 68.60 2.03 45.88 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 C -0.13 -2.74 0.89 -52.26 -0.05 -2.79 16 24 C -0.14 -4.07 7.36 30.88 0.23 -3.84 16 25 C -0.13 -2.70 8.08 31.23 0.25 -2.45 16 26 C -0.10 -1.76 7.84 30.88 0.24 -1.52 16 27 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 1.27 5.93 -2.39 -0.01 1.25 16 31 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.58 6.63 -2.38 -0.02 1.57 16 33 H 0.05 1.33 7.98 -2.39 -0.02 1.31 16 34 H 0.11 1.90 4.78 -2.39 -0.01 1.89 16 35 H 0.14 4.97 8.14 -2.39 -0.02 4.95 16 36 H 0.14 4.94 8.14 -2.39 -0.02 4.92 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.06 2.34 5.91 -2.38 -0.01 2.32 16 41 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -78.24 363.45 1.15 -77.08 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.96 Total: 18.14 kcal Atomic # 6 Polarization: -60.11 SS G_CDS: 4.74 Total: -55.37 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -1.28 Total: -87.34 kcal Atomic # 8 Polarization: -95.91 SS G_CDS: -5.00 Total: -100.91 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 102.82 SS G_CDS: -0.30 Total: 102.52 kcal Total: -78.24 1.15 -77.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.907 kcal (2) G-P(sol) polarization free energy of solvation -78.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds