Wall clock time and date at job start Tue Mar 31 2020 11:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99671 * 2 1 4 4 H 1.08999 * 112.95317 * 338.10491 * 3 2 1 5 5 C 1.53954 * 113.66031 * 109.50795 * 3 2 1 6 6 C 1.53957 * 87.29472 * 89.73726 * 5 3 2 7 7 H 1.08997 * 113.66449 * 270.25900 * 6 5 3 8 8 N 1.46499 * 113.65875 * 139.29899 * 6 5 3 9 9 C 1.46499 * 120.00064 * 319.50446 * 8 6 5 10 10 S 1.65598 * 119.99959 * 139.50726 * 8 6 5 11 11 O 1.42098 * 104.27822 * 206.07062 * 10 8 6 12 12 O 1.42101 * 104.27603 * 333.92381 * 10 8 6 13 13 C 1.81401 * 104.44924 * 89.99625 * 10 8 6 14 14 C 1.53003 * 109.47058 * 180.02562 * 13 10 8 15 15 C 1.50696 * 109.47463 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99521 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00583 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99458 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00295 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47456 * 59.99845 * 19 17 15 21 21 H 1.48503 * 109.47101 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.47085 * 299.99910 * 19 17 15 23 23 C 1.52909 * 113.66060 * 206.69255 * 3 2 1 24 24 C 1.52903 * 121.13918 * 36.15257 * 23 3 2 25 25 C 1.53948 * 86.78755 * 100.81872 * 24 23 3 26 26 C 1.52914 * 121.13539 * 144.71329 * 23 3 2 27 27 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46945 * 299.99554 * 1 2 3 29 29 H 1.09000 * 109.47361 * 59.99710 * 1 2 3 30 30 H 1.08998 * 113.57647 * 335.13483 * 5 3 2 31 31 H 1.09000 * 113.58060 * 204.33950 * 5 3 2 32 32 H 1.08997 * 109.47690 * 90.00254 * 9 8 6 33 33 H 1.09004 * 109.46946 * 210.00529 * 9 8 6 34 34 H 1.09000 * 109.47216 * 330.00010 * 9 8 6 35 35 H 1.08992 * 109.47459 * 299.99598 * 13 10 8 36 36 H 1.08993 * 109.46984 * 60.00509 * 13 10 8 37 37 H 1.09001 * 109.47154 * 300.00029 * 14 13 10 38 38 H 1.09003 * 109.47049 * 59.99909 * 14 13 10 39 39 H 0.97007 * 119.99805 * 179.97438 * 18 17 15 40 40 H 1.09003 * 113.66288 * 215.29320 * 24 23 3 41 41 H 1.09003 * 113.66120 * 346.34558 * 24 23 3 42 42 H 1.08997 * 113.57878 * 270.13608 * 25 24 23 43 43 H 1.08994 * 113.65305 * 139.34556 * 25 24 23 44 44 H 1.09004 * 113.66265 * 13.64736 * 26 23 3 45 45 H 1.09001 * 113.66594 * 144.70702 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3322 2.0726 -0.3743 5 6 2.6916 1.6784 1.3292 6 6 3.9819 1.0650 0.7556 7 1 4.0929 0.0017 0.9679 8 7 5.1880 1.8367 1.0656 9 6 5.1555 3.3003 1.0103 10 16 6.5881 1.0546 1.4784 11 8 7.2949 1.9971 2.2729 12 8 6.1506 -0.1822 2.0246 13 6 7.4398 0.7873 -0.1008 14 6 8.7638 0.0628 0.1501 15 6 9.4717 -0.1587 -1.1617 16 1 9.0219 0.1827 -2.0824 17 6 10.6930 -0.7982 -1.1868 18 7 11.2403 -1.2144 -0.0657 19 14 11.5700 -1.0734 -2.8129 20 1 11.8378 0.2367 -3.4589 21 1 12.8546 -1.7776 -2.5695 22 1 10.7146 -1.8987 -3.7032 23 6 3.4029 1.3572 -0.6291 24 6 3.7587 0.4867 -1.8347 25 6 3.5448 1.7443 -2.6965 26 6 3.8607 2.5719 -1.4374 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 2.2962 1.1372 2.1887 31 1 2.7577 2.7531 1.4988 32 1 4.8731 3.6946 1.9864 33 1 6.1422 3.6756 0.7384 34 1 4.4273 3.6197 0.2648 35 1 6.8124 0.1809 -0.7539 36 1 7.6356 1.7488 -0.5753 37 1 9.3915 0.6688 0.8034 38 1 8.5676 -0.8988 0.6244 39 1 12.0994 -1.6646 -0.0833 40 1 4.7889 0.1307 -1.8284 41 1 3.0364 -0.3058 -2.0305 42 1 2.5204 1.8618 -3.0497 43 1 4.2820 1.8606 -3.4909 44 1 3.2198 3.4452 -1.3157 45 1 4.9196 2.8020 -1.3194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451995396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:43 Heat of formation + Delta-G solvation = -66.571323 kcal Electronic energy + Delta-G solvation = -26339.422200 eV Core-core repulsion = 22679.226587 eV Total energy + Delta-G solvation = -3660.195612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12314 -37.33309 -36.59347 -35.77990 -35.32838 -33.85873 -33.00588 -31.12802 -27.39216 -27.00865 -25.57096 -25.31312 -24.77195 -23.82105 -21.58252 -20.70407 -18.82329 -18.36390 -17.60247 -16.78346 -16.40371 -16.14179 -15.89598 -15.44910 -15.31455 -14.97796 -14.55192 -14.40865 -14.12499 -13.68741 -13.36190 -12.94036 -12.60063 -12.51327 -12.38730 -12.32208 -12.10845 -11.91690 -11.80172 -11.72849 -11.53330 -11.40393 -11.24789 -11.07244 -11.03247 -10.91852 -10.63476 -10.41890 -10.34722 -10.28967 -10.10341 -9.72772 -9.59661 -9.22177 -8.60766 -8.48024 -6.10204 -4.15736 0.80349 3.05656 3.28419 3.31518 3.33224 3.35004 4.25849 4.31002 4.37107 4.43755 4.50692 4.60147 4.66314 4.70558 4.81769 4.92906 5.01863 5.10542 5.15314 5.24801 5.32679 5.33555 5.40925 5.52278 5.55056 5.59954 5.65609 5.71691 5.78526 5.78962 5.85234 5.86367 5.88754 6.05207 6.26505 6.34069 6.35476 6.54341 6.75097 6.99989 7.32482 7.38788 7.82473 8.19927 8.87310 9.48769 11.00840 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.004072 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.613447 B = 6874.008132 C = 7614.789662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.091 3.909 4 H 0.077 0.923 5 C -0.163 4.163 6 C 0.147 3.853 7 H 0.130 0.870 8 N -0.995 5.995 9 C 0.084 3.916 10 S 2.587 3.413 11 O -0.965 6.965 12 O -0.964 6.964 13 C -0.589 4.589 14 C 0.029 3.971 15 C -0.519 4.519 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.110 4.110 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.927 8.637 -2.443 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.032 3.968 4 H 0.095 0.905 5 C -0.202 4.202 6 C 0.040 3.960 7 H 0.148 0.852 8 N -0.829 5.829 9 C -0.062 4.062 10 S 2.686 3.314 11 O -0.955 6.955 12 O -0.954 6.954 13 C -0.722 4.722 14 C -0.010 4.010 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.122 4.122 24 C -0.161 4.161 25 C -0.179 4.179 26 C -0.148 4.148 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.416 8.178 -1.428 22.969 hybrid contribution 0.298 0.131 -1.491 1.526 sum -21.118 8.309 -2.919 22.880 Atomic orbital electron populations 1.22806 0.81000 1.02859 0.99837 1.87919 1.19492 1.26076 1.94459 1.22580 0.92914 0.85260 0.96021 0.90522 1.23861 0.96448 1.01936 0.97968 1.22198 0.83140 0.96930 0.93750 0.85189 1.57594 1.25364 1.14184 1.85730 1.21653 1.03133 0.79232 1.02144 1.05808 0.73380 0.73749 0.78464 1.93534 1.72885 1.62416 1.66689 1.93530 1.79986 1.44880 1.77009 1.30496 1.12322 1.10143 1.19242 1.18950 0.87254 0.95323 0.99484 1.20957 1.04040 1.38622 0.92253 0.92117 1.25063 0.97289 0.95345 0.96750 1.69951 1.17916 1.38815 1.26198 0.86540 0.78884 0.78447 0.83457 1.20100 1.21079 1.20072 1.23276 0.94974 0.99392 0.94566 1.22659 1.02486 0.96732 0.94228 1.22866 1.01429 0.96845 0.96753 1.22729 1.02118 0.95142 0.94766 0.89492 0.94025 0.94103 0.90227 0.88692 0.92896 0.90989 0.90276 0.86297 0.86398 0.94959 0.94900 0.92491 0.89423 0.90576 0.90662 0.91186 0.91328 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.86 101.05 1.10 1.33 16 2 O -0.36 -3.90 10.20 -35.23 -0.36 -4.26 16 3 C 0.09 0.88 4.15 -26.28 -0.11 0.77 16 4 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 5 C -0.16 -1.68 7.39 -25.74 -0.19 -1.87 16 6 C 0.15 1.89 4.08 -67.48 -0.28 1.62 16 7 H 0.13 1.95 7.03 -51.93 -0.37 1.58 16 8 N -0.99 -13.85 3.12 -114.13 -0.36 -14.21 16 9 C 0.08 0.93 7.68 59.85 0.46 1.38 16 10 S 2.59 48.41 5.38 -107.50 -0.58 47.83 16 11 O -0.96 -20.55 17.09 -57.54 -0.98 -21.53 16 12 O -0.96 -20.76 16.63 -57.54 -0.96 -21.72 16 13 C -0.59 -11.48 6.12 37.16 0.23 -11.26 16 14 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.12 -1.28 0.94 -154.71 -0.15 -1.43 16 24 C -0.12 -1.40 7.71 -26.29 -0.20 -1.60 16 25 C -0.14 -1.32 8.08 -25.75 -0.21 -1.53 16 26 C -0.11 -1.01 5.26 -26.28 -0.14 -1.15 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.84 6.90 -51.93 -0.36 0.48 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 34 H 0.08 0.66 4.48 -51.93 -0.23 0.43 16 35 H 0.12 2.11 7.73 -51.93 -0.40 1.71 16 36 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.09 1.10 7.73 -51.93 -0.40 0.69 16 41 H 0.08 0.87 7.83 -51.93 -0.41 0.46 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 45 H 0.10 0.94 6.55 -51.93 -0.34 0.60 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -34.77 367.64 -9.51 -44.28 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.50 Total: 0.06 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -0.03 Total: -26.31 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.38 Total: -40.17 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -2.30 Total: -47.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 48.41 SS G_CDS: -0.58 Total: 47.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.77 -9.51 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.293 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds