Wall clock time and date at job start Tue Mar 31 2020 11:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99671 * 2 1 4 4 H 1.08999 * 112.95317 * 338.10491 * 3 2 1 5 5 C 1.53954 * 113.66031 * 109.50795 * 3 2 1 6 6 C 1.53957 * 87.29472 * 89.73726 * 5 3 2 7 7 H 1.08997 * 113.66449 * 270.25900 * 6 5 3 8 8 N 1.46499 * 113.65875 * 139.29899 * 6 5 3 9 9 C 1.46499 * 120.00064 * 319.50446 * 8 6 5 10 10 S 1.65598 * 119.99959 * 139.50726 * 8 6 5 11 11 O 1.42098 * 104.27822 * 206.07062 * 10 8 6 12 12 O 1.42101 * 104.27603 * 333.92381 * 10 8 6 13 13 C 1.81401 * 104.44924 * 89.99625 * 10 8 6 14 14 C 1.53003 * 109.47058 * 180.02562 * 13 10 8 15 15 C 1.50696 * 109.47463 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99521 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00583 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99458 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00295 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47456 * 59.99845 * 19 17 15 21 21 H 1.48503 * 109.47101 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.47085 * 299.99910 * 19 17 15 23 23 C 1.52909 * 113.66060 * 206.69255 * 3 2 1 24 24 C 1.52903 * 121.13918 * 36.15257 * 23 3 2 25 25 C 1.53948 * 86.78755 * 100.81872 * 24 23 3 26 26 C 1.52914 * 121.13539 * 144.71329 * 23 3 2 27 27 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46945 * 299.99554 * 1 2 3 29 29 H 1.09000 * 109.47361 * 59.99710 * 1 2 3 30 30 H 1.08998 * 113.57647 * 335.13483 * 5 3 2 31 31 H 1.09000 * 113.58060 * 204.33950 * 5 3 2 32 32 H 1.08997 * 109.47690 * 90.00254 * 9 8 6 33 33 H 1.09004 * 109.46946 * 210.00529 * 9 8 6 34 34 H 1.09000 * 109.47216 * 330.00010 * 9 8 6 35 35 H 1.08992 * 109.47459 * 299.99598 * 13 10 8 36 36 H 1.08993 * 109.46984 * 60.00509 * 13 10 8 37 37 H 1.09001 * 109.47154 * 300.00029 * 14 13 10 38 38 H 1.09003 * 109.47049 * 59.99909 * 14 13 10 39 39 H 0.97007 * 119.99805 * 179.97438 * 18 17 15 40 40 H 1.09003 * 113.66288 * 215.29320 * 24 23 3 41 41 H 1.09003 * 113.66120 * 346.34558 * 24 23 3 42 42 H 1.08997 * 113.57878 * 270.13608 * 25 24 23 43 43 H 1.08994 * 113.65305 * 139.34556 * 25 24 23 44 44 H 1.09004 * 113.66265 * 13.64736 * 26 23 3 45 45 H 1.09001 * 113.66594 * 144.70702 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3322 2.0726 -0.3743 5 6 2.6916 1.6784 1.3292 6 6 3.9819 1.0650 0.7556 7 1 4.0929 0.0017 0.9679 8 7 5.1880 1.8367 1.0656 9 6 5.1555 3.3003 1.0103 10 16 6.5881 1.0546 1.4784 11 8 7.2949 1.9971 2.2729 12 8 6.1506 -0.1822 2.0246 13 6 7.4398 0.7873 -0.1008 14 6 8.7638 0.0628 0.1501 15 6 9.4717 -0.1587 -1.1617 16 1 9.0219 0.1827 -2.0824 17 6 10.6930 -0.7982 -1.1868 18 7 11.2403 -1.2144 -0.0657 19 14 11.5700 -1.0734 -2.8129 20 1 11.8378 0.2367 -3.4589 21 1 12.8546 -1.7776 -2.5695 22 1 10.7146 -1.8987 -3.7032 23 6 3.4029 1.3572 -0.6291 24 6 3.7587 0.4867 -1.8347 25 6 3.5448 1.7443 -2.6965 26 6 3.8607 2.5719 -1.4374 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 2.2962 1.1372 2.1887 31 1 2.7577 2.7531 1.4988 32 1 4.8731 3.6946 1.9864 33 1 6.1422 3.6756 0.7384 34 1 4.4273 3.6197 0.2648 35 1 6.8124 0.1809 -0.7539 36 1 7.6356 1.7488 -0.5753 37 1 9.3915 0.6688 0.8034 38 1 8.5676 -0.8988 0.6244 39 1 12.0994 -1.6646 -0.0833 40 1 4.7889 0.1307 -1.8284 41 1 3.0364 -0.3058 -2.0305 42 1 2.5204 1.8618 -3.0497 43 1 4.2820 1.8606 -3.4909 44 1 3.2198 3.4452 -1.3157 45 1 4.9196 2.8020 -1.3194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451995396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:42 Heat of formation + Delta-G solvation = -91.262050 kcal Electronic energy + Delta-G solvation = -26340.492870 eV Core-core repulsion = 22679.226587 eV Total energy + Delta-G solvation = -3661.266283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94974 -38.23180 -38.06289 -37.08490 -36.63066 -35.90229 -33.90094 -33.13888 -28.30323 -27.67335 -27.54299 -26.11139 -25.55340 -24.77187 -23.48753 -21.57816 -20.06407 -19.30822 -19.16903 -18.40020 -17.63117 -17.19966 -16.92573 -16.62277 -16.58099 -16.54365 -15.66969 -15.53369 -15.09070 -14.95909 -14.62683 -14.46238 -13.78969 -13.75444 -13.62111 -13.29443 -13.24221 -13.16303 -13.07478 -12.92197 -12.86532 -12.81084 -12.58390 -12.53304 -12.25630 -12.20796 -12.17236 -11.80778 -11.79016 -11.48272 -11.20600 -11.00940 -10.86372 -10.65055 -10.34757 -9.69657 -8.26674 -6.41221 -0.72406 1.39716 1.43643 1.51789 1.73041 2.37408 2.64499 2.82641 3.06377 3.15576 3.41527 3.59370 3.70171 3.81452 3.83745 3.94574 4.03191 4.05939 4.12381 4.32807 4.48547 4.56748 4.59739 4.63952 4.67920 4.74460 4.82842 4.85339 4.92696 4.94854 4.96623 4.99785 5.06813 5.12783 5.20105 5.23917 5.24699 5.37202 5.45179 5.57415 5.66833 5.74646 6.04636 6.36020 6.71807 7.28946 8.85588 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.004072 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.613447 B = 6874.008132 C = 7614.789662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.099 3.901 4 H 0.109 0.891 5 C -0.155 4.155 6 C 0.125 3.875 7 H 0.099 0.901 8 N -0.980 5.980 9 C 0.071 3.929 10 S 2.605 3.395 11 O -0.993 6.993 12 O -0.999 6.999 13 C -0.585 4.585 14 C 0.023 3.977 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.261 1.261 21 H -0.284 1.284 22 H -0.264 1.264 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.131 4.131 26 C -0.107 4.107 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.006 0.994 38 H 0.002 0.998 39 H 0.268 0.732 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.100 0.900 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.134 10.893 -4.654 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C 0.041 3.959 4 H 0.127 0.873 5 C -0.195 4.195 6 C 0.019 3.981 7 H 0.117 0.883 8 N -0.818 5.818 9 C -0.073 4.073 10 S 2.704 3.296 11 O -0.983 6.983 12 O -0.990 6.990 13 C -0.717 4.717 14 C -0.016 4.016 15 C -0.577 4.577 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.185 1.185 21 H -0.209 1.209 22 H -0.188 1.188 23 C -0.119 4.119 24 C -0.176 4.176 25 C -0.169 4.169 26 C -0.144 4.144 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.024 0.976 38 H 0.020 0.980 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.627 10.437 -3.648 26.086 hybrid contribution 0.889 -0.599 -0.754 1.311 sum -22.738 9.837 -4.402 25.163 Atomic orbital electron populations 1.22984 0.79294 1.03635 1.01095 1.87895 1.21493 1.27095 1.94532 1.22584 0.92775 0.85640 0.94933 0.87326 1.23908 0.94279 1.03002 0.98265 1.22415 0.83415 0.95648 0.96633 0.88348 1.57166 1.23557 1.15471 1.85562 1.22025 1.04477 0.76793 1.03957 1.04913 0.73969 0.72954 0.77760 1.93487 1.74428 1.62907 1.67490 1.93477 1.80715 1.47040 1.77736 1.30371 1.09497 1.10859 1.20928 1.18797 0.90163 0.94169 0.98480 1.21460 1.04518 1.38433 0.93320 0.90601 1.26137 0.98323 0.94902 1.00856 1.70108 1.18499 1.39874 1.28977 0.85356 0.77430 0.78991 0.78431 1.18550 1.20904 1.18831 1.23347 0.95514 1.00207 0.92783 1.22705 1.01096 0.97766 0.96058 1.22835 1.02429 0.95058 0.96545 1.22774 1.02477 0.95498 0.93658 0.89166 0.92992 0.92494 0.90972 0.86312 0.91997 0.90877 0.86727 0.84791 0.83894 0.97606 0.98008 0.92369 0.91528 0.91294 0.88925 0.91322 0.88200 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.86 113.37 1.23 1.55 16 2 O -0.39 -7.83 10.20 -148.98 -1.52 -9.35 16 3 C 0.10 1.62 4.15 30.89 0.13 1.75 16 4 H 0.11 1.12 7.90 -2.39 -0.02 1.10 16 5 C -0.15 -2.84 7.39 31.23 0.23 -2.61 16 6 C 0.13 3.14 4.08 45.28 0.18 3.32 16 7 H 0.10 3.10 7.03 -2.39 -0.02 3.08 16 8 N -0.98 -26.44 3.12 -514.99 -1.61 -28.04 16 9 C 0.07 1.39 7.68 127.77 0.98 2.37 16 10 S 2.61 100.41 5.38 -56.49 -0.30 100.10 16 11 O -0.99 -43.29 17.09 -127.65 -2.18 -45.47 16 12 O -1.00 -45.42 16.63 -127.65 -2.12 -47.54 16 13 C -0.58 -23.28 6.12 71.98 0.44 -22.84 16 14 C 0.02 1.23 4.98 29.85 0.15 1.38 16 15 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 16 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 17 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 19 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.12 -2.23 0.94 -52.31 -0.05 -2.27 16 24 C -0.14 -3.01 7.71 30.88 0.24 -2.77 16 25 C -0.13 -2.06 8.08 31.23 0.25 -1.81 16 26 C -0.11 -1.55 5.26 30.89 0.16 -1.38 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.12 1.60 6.90 -2.39 -0.02 1.59 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.44 7.79 -2.39 -0.02 1.42 16 34 H 0.11 1.41 4.48 -2.39 -0.01 1.40 16 35 H 0.13 4.86 7.73 -2.39 -0.02 4.85 16 36 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 39 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 40 H 0.07 1.69 7.73 -2.39 -0.02 1.67 16 41 H 0.07 1.55 7.83 -2.39 -0.02 1.53 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 0.88 7.85 -2.38 -0.02 0.86 16 45 H 0.09 1.46 6.55 -2.39 -0.02 1.44 16 Total: -1.00 -78.75 367.64 0.18 -78.57 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.96 Total: 16.84 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 4.64 Total: -53.26 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.32 Total: -85.68 kcal Atomic # 8 Polarization: -96.54 SS G_CDS: -5.82 Total: -102.37 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 100.41 SS G_CDS: -0.30 Total: 100.10 kcal Total: -78.75 0.18 -78.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.694 kcal (2) G-P(sol) polarization free energy of solvation -78.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds