Wall clock time and date at job start Tue Mar 31 2020 11:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00064 * 2 1 4 4 H 1.08992 * 112.88980 * 21.84458 * 3 2 1 5 5 C 1.53955 * 113.66316 * 250.49276 * 3 2 1 6 6 C 1.53948 * 87.29417 * 220.70462 * 5 3 2 7 7 H 1.08998 * 113.66207 * 139.20996 * 6 5 3 8 8 N 1.46504 * 113.66290 * 270.25978 * 6 5 3 9 9 C 1.46503 * 119.99685 * 52.76697 * 8 6 5 10 10 S 1.65596 * 120.00415 * 232.76863 * 8 6 5 11 11 O 1.42102 * 104.27994 * 206.07194 * 10 8 6 12 12 O 1.42104 * 104.27403 * 333.92530 * 10 8 6 13 13 C 1.81400 * 104.45026 * 89.99838 * 10 8 6 14 14 C 1.52997 * 109.46940 * 180.02562 * 13 10 8 15 15 C 1.50708 * 109.47162 * 179.97438 * 14 13 10 16 16 H 1.07993 * 119.99438 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99856 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00458 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99738 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46781 * 119.99954 * 19 17 15 22 22 H 1.48498 * 109.47271 * 240.00259 * 19 17 15 23 23 C 1.52908 * 86.78643 * 24.73560 * 6 5 3 24 24 C 1.52899 * 121.14110 * 209.38173 * 23 6 5 25 25 C 1.53951 * 86.78316 * 209.37689 * 24 23 6 26 26 C 1.52907 * 121.13990 * 100.81528 * 23 6 5 27 27 H 1.09003 * 109.46763 * 300.00475 * 1 2 3 28 28 H 1.09006 * 109.46880 * 59.99617 * 1 2 3 29 29 H 1.08996 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09000 * 113.58124 * 106.09724 * 5 3 2 31 31 H 1.09001 * 113.64655 * 335.31942 * 5 3 2 32 32 H 1.08998 * 109.47071 * 84.09393 * 9 8 6 33 33 H 1.09004 * 109.46956 * 204.09772 * 9 8 6 34 34 H 1.08999 * 109.47116 * 324.09603 * 9 8 6 35 35 H 1.09003 * 109.47150 * 299.99593 * 13 10 8 36 36 H 1.08995 * 109.46925 * 60.00285 * 13 10 8 37 37 H 1.09000 * 109.47588 * 299.99851 * 14 13 10 38 38 H 1.09001 * 109.47499 * 59.99953 * 14 13 10 39 39 H 0.97000 * 120.00501 * 179.97438 * 18 17 15 40 40 H 1.09003 * 113.66499 * 323.84573 * 24 23 6 41 41 H 1.09002 * 113.66441 * 94.90366 * 24 23 6 42 42 H 1.09006 * 113.58007 * 270.13167 * 25 24 23 43 43 H 1.09000 * 113.65432 * 139.35513 * 25 24 23 44 44 H 1.09002 * 113.66127 * 265.10126 * 26 23 6 45 45 H 1.08999 * 113.66295 * 36.15280 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3313 2.0718 0.3736 5 6 2.6918 1.6784 -1.3292 6 6 3.8147 2.3152 -0.4905 7 1 4.8142 2.1257 -0.8818 8 7 3.5837 3.7268 -0.1737 9 6 2.3235 4.1412 0.4480 10 16 4.7468 4.8540 -0.5183 11 8 4.5090 5.8994 0.4143 12 8 5.9630 4.1192 -0.5006 13 6 4.3596 5.4036 -2.2031 14 6 5.3767 6.4590 -2.6416 15 6 5.0554 6.9152 -4.0416 16 1 4.2105 6.4941 -4.5661 17 6 5.8402 7.8701 -4.6527 18 7 6.8687 8.3832 -4.0138 19 14 5.4423 8.4350 -6.3882 20 1 4.2442 7.7100 -6.8823 21 1 5.1698 9.8948 -6.3832 22 1 6.5961 8.1498 -7.2784 23 6 3.4027 1.3594 0.6296 24 6 3.5917 1.7356 2.0995 25 6 3.7475 0.2291 2.3753 26 6 4.1940 0.0813 0.9094 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.1276 2.3989 -1.9213 31 1 3.0174 0.8158 -1.9106 32 1 2.3880 4.0030 1.5272 33 1 2.1375 5.1922 0.2266 34 1 1.5072 3.5367 0.0525 35 1 4.4042 4.5522 -2.8823 36 1 3.3580 5.8331 -2.2239 37 1 5.3327 7.3105 -1.9626 38 1 6.3782 6.0292 -2.6209 39 1 7.4211 9.0547 -4.4438 40 1 4.4973 2.3113 2.2909 41 1 2.7046 2.1745 2.5563 42 1 2.8059 -0.2734 2.5970 43 1 4.5314 -0.0049 3.0956 44 1 3.7881 -0.8015 0.4153 45 1 5.2689 0.1920 0.7662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451995397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:45 Heat of formation + Delta-G solvation = -66.031605 kcal Electronic energy + Delta-G solvation = -26085.990903 eV Core-core repulsion = 22425.818695 eV Total energy + Delta-G solvation = -3660.172209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.17584 -37.17044 -36.66017 -36.10970 -35.43531 -33.90189 -32.66884 -31.16881 -27.69653 -26.81002 -25.75450 -25.59552 -24.72838 -23.28121 -21.67585 -20.95234 -18.92588 -18.28879 -17.72747 -16.83737 -16.43658 -16.21222 -15.88670 -15.60367 -15.38130 -14.86180 -14.60527 -14.55058 -14.05247 -13.44614 -13.22865 -12.97215 -12.72775 -12.55673 -12.51920 -12.45882 -12.34506 -11.93473 -11.77020 -11.68720 -11.60323 -11.52796 -11.22068 -11.10438 -11.05291 -10.96971 -10.46467 -10.42921 -10.40134 -10.37337 -10.14856 -9.76479 -9.53190 -9.28778 -8.70900 -8.51919 -6.13630 -4.19243 0.71907 2.94420 3.24389 3.31687 3.35018 3.53805 4.19549 4.25640 4.32384 4.37808 4.46117 4.57335 4.61389 4.72465 4.74760 4.82474 5.00578 5.12884 5.13780 5.21605 5.31415 5.37473 5.41636 5.46035 5.55457 5.59491 5.64250 5.72247 5.74904 5.75384 5.82288 5.84423 5.87731 5.97473 6.14179 6.30596 6.40179 6.47691 6.67212 7.02408 7.28642 7.34464 7.79514 8.16253 8.84399 9.45659 10.97425 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003466 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.432460 B = 8077.630458 C = 8692.025069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.078 3.922 4 H 0.099 0.901 5 C -0.168 4.168 6 C 0.139 3.861 7 H 0.121 0.879 8 N -0.988 5.988 9 C 0.084 3.916 10 S 2.590 3.410 11 O -0.962 6.962 12 O -0.962 6.962 13 C -0.589 4.589 14 C 0.027 3.973 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.136 4.136 26 C -0.105 4.105 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 -16.799 9.963 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.021 3.979 4 H 0.116 0.884 5 C -0.208 4.208 6 C 0.031 3.969 7 H 0.139 0.861 8 N -0.822 5.822 9 C -0.062 4.062 10 S 2.689 3.311 11 O -0.952 6.952 12 O -0.952 6.952 13 C -0.722 4.722 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.109 4.109 24 C -0.159 4.159 25 C -0.174 4.174 26 C -0.143 4.143 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.722 -16.570 10.595 22.896 hybrid contribution -0.902 0.609 -1.543 1.888 sum -12.624 -15.962 9.052 22.273 Atomic orbital electron populations 1.22763 0.81555 1.02535 0.99830 1.87921 1.19148 1.27531 1.94531 1.23861 0.92907 0.85022 0.96123 0.88389 1.23956 0.98251 1.01365 0.97219 1.21418 0.99916 0.79837 0.95687 0.86111 1.57474 1.32132 1.17200 1.75345 1.21699 0.85590 1.00641 0.98233 1.05790 0.73489 0.73271 0.78543 1.93542 1.84980 1.56612 1.60099 1.93531 1.42836 1.70997 1.87845 1.30492 1.10936 1.11029 1.19754 1.18973 0.92067 0.91432 0.98687 1.21036 1.13517 1.22753 0.98576 0.92002 1.25071 0.94914 0.96126 0.98389 1.69961 1.16893 1.28398 1.37578 0.86417 0.78388 0.78559 0.83952 1.19650 1.20792 1.20763 1.23119 0.95308 0.97437 0.94987 1.22707 1.02218 0.96538 0.94462 1.22799 1.01381 0.96492 0.96716 1.22465 0.99419 0.96126 0.96298 0.94251 0.94081 0.89882 0.90305 0.88163 0.92335 0.90463 0.91290 0.86193 0.86341 0.94896 0.94844 0.92566 0.89559 0.91590 0.90281 0.91668 0.90417 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.86 101.05 1.10 1.31 16 2 O -0.37 -3.71 9.91 -35.23 -0.35 -4.06 16 3 C 0.08 0.76 3.52 -26.28 -0.09 0.67 16 4 H 0.10 0.85 4.97 -51.93 -0.26 0.59 16 5 C -0.17 -1.73 7.27 -25.75 -0.19 -1.92 16 6 C 0.14 1.70 4.26 -67.48 -0.29 1.41 16 7 H 0.12 1.59 7.08 -51.93 -0.37 1.22 16 8 N -0.99 -13.21 3.14 -114.13 -0.36 -13.57 16 9 C 0.08 0.91 8.70 59.85 0.52 1.43 16 10 S 2.59 46.48 5.37 -107.50 -0.58 45.90 16 11 O -0.96 -19.77 16.97 -57.54 -0.98 -20.75 16 12 O -0.96 -19.72 16.65 -57.54 -0.96 -20.68 16 13 C -0.59 -11.22 6.12 37.16 0.23 -10.99 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.11 -1.15 0.72 -154.72 -0.11 -1.26 16 24 C -0.12 -1.29 6.57 -26.29 -0.17 -1.47 16 25 C -0.14 -1.29 8.08 -25.75 -0.21 -1.50 16 26 C -0.11 -1.07 7.56 -26.29 -0.20 -1.27 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16 33 H 0.08 0.84 7.57 -51.93 -0.39 0.45 16 34 H 0.07 0.58 4.91 -51.93 -0.25 0.32 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 36 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.64 7.40 -51.93 -0.38 0.26 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.79 7.65 -51.93 -0.40 0.39 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -34.02 367.56 -9.37 -43.39 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.44 Total: -0.04 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 0.04 Total: -26.14 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.38 Total: -39.28 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -2.28 Total: -45.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 46.48 SS G_CDS: -0.58 Total: 45.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.02 -9.37 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.641 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds