Wall clock time and date at job start Tue Mar 31 2020 11:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00064 * 2 1 4 4 H 1.08992 * 112.88980 * 21.84458 * 3 2 1 5 5 C 1.53955 * 113.66316 * 250.49276 * 3 2 1 6 6 C 1.53948 * 87.29417 * 220.70462 * 5 3 2 7 7 H 1.08998 * 113.66207 * 139.20996 * 6 5 3 8 8 N 1.46504 * 113.66290 * 270.25978 * 6 5 3 9 9 C 1.46503 * 119.99685 * 52.76697 * 8 6 5 10 10 S 1.65596 * 120.00415 * 232.76863 * 8 6 5 11 11 O 1.42102 * 104.27994 * 206.07194 * 10 8 6 12 12 O 1.42104 * 104.27403 * 333.92530 * 10 8 6 13 13 C 1.81400 * 104.45026 * 89.99838 * 10 8 6 14 14 C 1.52997 * 109.46940 * 180.02562 * 13 10 8 15 15 C 1.50708 * 109.47162 * 179.97438 * 14 13 10 16 16 H 1.07993 * 119.99438 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99856 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00458 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99738 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46781 * 119.99954 * 19 17 15 22 22 H 1.48498 * 109.47271 * 240.00259 * 19 17 15 23 23 C 1.52908 * 86.78643 * 24.73560 * 6 5 3 24 24 C 1.52899 * 121.14110 * 209.38173 * 23 6 5 25 25 C 1.53951 * 86.78316 * 209.37689 * 24 23 6 26 26 C 1.52907 * 121.13990 * 100.81528 * 23 6 5 27 27 H 1.09003 * 109.46763 * 300.00475 * 1 2 3 28 28 H 1.09006 * 109.46880 * 59.99617 * 1 2 3 29 29 H 1.08996 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09000 * 113.58124 * 106.09724 * 5 3 2 31 31 H 1.09001 * 113.64655 * 335.31942 * 5 3 2 32 32 H 1.08998 * 109.47071 * 84.09393 * 9 8 6 33 33 H 1.09004 * 109.46956 * 204.09772 * 9 8 6 34 34 H 1.08999 * 109.47116 * 324.09603 * 9 8 6 35 35 H 1.09003 * 109.47150 * 299.99593 * 13 10 8 36 36 H 1.08995 * 109.46925 * 60.00285 * 13 10 8 37 37 H 1.09000 * 109.47588 * 299.99851 * 14 13 10 38 38 H 1.09001 * 109.47499 * 59.99953 * 14 13 10 39 39 H 0.97000 * 120.00501 * 179.97438 * 18 17 15 40 40 H 1.09003 * 113.66499 * 323.84573 * 24 23 6 41 41 H 1.09002 * 113.66441 * 94.90366 * 24 23 6 42 42 H 1.09006 * 113.58007 * 270.13167 * 25 24 23 43 43 H 1.09000 * 113.65432 * 139.35513 * 25 24 23 44 44 H 1.09002 * 113.66127 * 265.10126 * 26 23 6 45 45 H 1.08999 * 113.66295 * 36.15280 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3313 2.0718 0.3736 5 6 2.6918 1.6784 -1.3292 6 6 3.8147 2.3152 -0.4905 7 1 4.8142 2.1257 -0.8818 8 7 3.5837 3.7268 -0.1737 9 6 2.3235 4.1412 0.4480 10 16 4.7468 4.8540 -0.5183 11 8 4.5090 5.8994 0.4143 12 8 5.9630 4.1192 -0.5006 13 6 4.3596 5.4036 -2.2031 14 6 5.3767 6.4590 -2.6416 15 6 5.0554 6.9152 -4.0416 16 1 4.2105 6.4941 -4.5661 17 6 5.8402 7.8701 -4.6527 18 7 6.8687 8.3832 -4.0138 19 14 5.4423 8.4350 -6.3882 20 1 4.2442 7.7100 -6.8823 21 1 5.1698 9.8948 -6.3832 22 1 6.5961 8.1498 -7.2784 23 6 3.4027 1.3594 0.6296 24 6 3.5917 1.7356 2.0995 25 6 3.7475 0.2291 2.3753 26 6 4.1940 0.0813 0.9094 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.1276 2.3989 -1.9213 31 1 3.0174 0.8158 -1.9106 32 1 2.3880 4.0030 1.5272 33 1 2.1375 5.1922 0.2266 34 1 1.5072 3.5367 0.0525 35 1 4.4042 4.5522 -2.8823 36 1 3.3580 5.8331 -2.2239 37 1 5.3327 7.3105 -1.9626 38 1 6.3782 6.0292 -2.6209 39 1 7.4211 9.0547 -4.4438 40 1 4.4973 2.3113 2.2909 41 1 2.7046 2.1745 2.5563 42 1 2.8059 -0.2734 2.5970 43 1 4.5314 -0.0049 3.0956 44 1 3.7881 -0.8015 0.4153 45 1 5.2689 0.1920 0.7662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451995397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:45 Heat of formation + Delta-G solvation = -89.507024 kcal Electronic energy + Delta-G solvation = -26087.008874 eV Core-core repulsion = 22425.818695 eV Total energy + Delta-G solvation = -3661.190179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01038 -38.23279 -37.86668 -37.12628 -36.91890 -35.90561 -33.58120 -33.13528 -28.53171 -27.64514 -27.42199 -26.54863 -25.54098 -24.22860 -23.44797 -21.92396 -20.03196 -19.41699 -19.08795 -18.43849 -17.49467 -17.27520 -17.11154 -16.68157 -16.54681 -16.50624 -15.77993 -15.37285 -15.16755 -15.01993 -14.48502 -14.04256 -13.89166 -13.72453 -13.64852 -13.43551 -13.29751 -13.19803 -13.12006 -13.06570 -12.95988 -12.80338 -12.77827 -12.50796 -12.27325 -12.14987 -12.05060 -11.84554 -11.72487 -11.31480 -11.24513 -11.07627 -10.95300 -10.66607 -10.25702 -9.79910 -8.26907 -6.41171 -0.74750 1.40598 1.41238 1.54545 1.67629 2.37406 2.83075 2.86376 3.06458 3.13277 3.36480 3.53075 3.67706 3.74006 3.80098 3.91721 3.97144 4.06102 4.11028 4.26173 4.47595 4.58045 4.59208 4.63288 4.66771 4.71910 4.75141 4.86610 4.88633 4.90889 4.94024 5.02609 5.05875 5.10398 5.13197 5.23509 5.25500 5.27174 5.47626 5.59190 5.67429 5.68619 6.04997 6.37005 6.72658 7.29215 8.85596 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003466 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.432460 B = 8077.630458 C = 8692.025069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.388 6.388 3 C 0.088 3.912 4 H 0.114 0.886 5 C -0.162 4.162 6 C 0.122 3.878 7 H 0.105 0.895 8 N -0.975 5.975 9 C 0.072 3.928 10 S 2.613 3.387 11 O -0.990 6.990 12 O -0.993 6.993 13 C -0.587 4.587 14 C 0.020 3.980 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.255 1.255 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.108 4.108 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.107 4.107 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.267 0.733 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -18.120 9.344 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.306 6.306 3 C 0.030 3.970 4 H 0.131 0.869 5 C -0.202 4.202 6 C 0.016 3.984 7 H 0.123 0.877 8 N -0.811 5.811 9 C -0.072 4.072 10 S 2.711 3.289 11 O -0.981 6.981 12 O -0.983 6.983 13 C -0.719 4.719 14 C -0.019 4.019 15 C -0.577 4.577 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.798 3.202 20 H -0.179 1.179 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.110 4.110 24 C -0.164 4.164 25 C -0.164 4.164 26 C -0.145 4.145 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.523 -17.895 9.970 25.111 hybrid contribution -0.059 0.935 -1.275 1.582 sum -14.582 -16.960 8.695 23.998 Atomic orbital electron populations 1.22950 0.80036 1.03625 1.00673 1.87901 1.20815 1.27380 1.94545 1.23768 0.92467 0.85578 0.95168 0.86928 1.23939 0.97285 1.01389 0.97561 1.21609 1.00152 0.79126 0.97551 0.87736 1.57005 1.32250 1.16788 1.75087 1.22029 0.84963 1.01413 0.98838 1.04790 0.73449 0.73047 0.77586 1.93497 1.85538 1.58362 1.60677 1.93485 1.45265 1.71598 1.87967 1.30387 1.10099 1.09976 1.21406 1.18827 0.92688 0.92317 0.98048 1.21536 1.13818 1.22776 0.99522 0.90590 1.26130 0.94643 0.96295 1.03213 1.70106 1.18245 1.29263 1.39803 0.85253 0.78699 0.78137 0.78091 1.17870 1.20326 1.20372 1.23189 0.96319 0.97033 0.94483 1.22704 1.01864 0.97215 0.94659 1.22757 1.01908 0.95539 0.96236 1.22469 0.99029 0.95994 0.97016 0.93185 0.93412 0.88820 0.89246 0.87861 0.91513 0.90388 0.88106 0.84219 0.83972 0.97589 0.97691 0.92376 0.91499 0.90391 0.89394 0.91182 0.90188 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.86 113.37 1.23 1.49 16 2 O -0.39 -6.56 9.91 -148.98 -1.48 -8.04 16 3 C 0.09 1.45 3.52 30.89 0.11 1.56 16 4 H 0.11 1.50 4.97 -2.39 -0.01 1.49 16 5 C -0.16 -2.94 7.27 31.23 0.23 -2.71 16 6 C 0.12 2.85 4.26 45.28 0.19 3.04 16 7 H 0.10 2.77 7.08 -2.39 -0.02 2.76 16 8 N -0.97 -24.91 3.14 -514.98 -1.62 -26.53 16 9 C 0.07 1.38 8.70 127.77 1.11 2.49 16 10 S 2.61 94.85 5.37 -56.49 -0.30 94.55 16 11 O -0.99 -41.36 16.97 -127.65 -2.17 -43.53 16 12 O -0.99 -42.10 16.65 -127.65 -2.13 -44.22 16 13 C -0.59 -22.25 6.12 71.98 0.44 -21.81 16 14 C 0.02 1.06 4.98 29.85 0.15 1.21 16 15 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 16 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 19 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.11 -2.15 0.72 -52.32 -0.04 -2.19 16 24 C -0.13 -2.52 6.57 30.88 0.20 -2.32 16 25 C -0.13 -2.20 8.08 31.23 0.25 -1.94 16 26 C -0.11 -2.07 7.56 30.88 0.23 -1.83 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.21 6.70 -2.39 -0.02 1.19 16 33 H 0.08 1.53 7.57 -2.38 -0.02 1.51 16 34 H 0.10 1.31 4.91 -2.39 -0.01 1.30 16 35 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 36 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.34 7.40 -2.39 -0.02 1.32 16 42 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.50 7.65 -2.39 -0.02 1.48 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -74.81 367.56 0.39 -74.41 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.96 Total: 17.28 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 4.81 Total: -52.41 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.33 Total: -83.28 kcal Atomic # 8 Polarization: -90.01 SS G_CDS: -5.77 Total: -95.78 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 94.85 SS G_CDS: -0.30 Total: 94.55 kcal Total: -74.81 0.39 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.093 kcal (2) G-P(sol) polarization free energy of solvation -74.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds