Wall clock time and date at job start Tue Mar 31 2020 11:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21273 * 120.00087 * 2 1 4 4 N 1.34774 * 119.99643 * 179.97438 * 2 1 3 5 5 C 1.39457 * 119.99848 * 185.27366 * 4 2 1 6 6 C 1.39379 * 120.39578 * 32.87995 * 5 4 2 7 7 C 1.38288 * 118.42854 * 179.97438 * 6 5 4 8 8 C 1.39477 * 119.15156 * 0.02562 * 7 6 5 9 9 C 1.47923 * 119.64430 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99957 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99892 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99768 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.53829 * 327.61235 * 12 11 9 14 14 C 1.54469 * 110.66218 * 90.24055 * 12 11 9 15 15 C 1.53873 * 106.68295 * 142.05100 * 14 12 11 16 16 C 1.54261 * 106.60056 * 0.15871 * 15 14 12 17 17 H 1.09008 * 110.59794 * 95.12601 * 16 15 14 18 18 C 1.50697 * 110.48553 * 217.70873 * 16 15 14 19 19 H 1.08003 * 120.00131 * 114.77599 * 18 16 15 20 20 C 1.37876 * 120.00074 * 294.77513 * 18 16 15 21 21 N 1.31516 * 120.00438 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 120.00111 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47211 * 90.00150 * 22 20 18 24 24 H 1.48497 * 109.47304 * 210.00444 * 22 20 18 25 25 H 1.48507 * 109.46937 * 330.00450 * 22 20 18 26 26 C 1.54882 * 104.19893 * 336.38983 * 16 15 14 27 27 N 1.32809 * 120.71498 * 0.27633 * 8 7 6 28 28 C 1.31351 * 121.70985 * 359.43351 * 27 8 7 29 29 H 1.09000 * 109.47014 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47228 * 300.00347 * 1 2 3 31 31 H 1.09004 * 109.46593 * 60.00514 * 1 2 3 32 32 H 0.96998 * 120.00615 * 5.27287 * 4 2 1 33 33 H 1.07991 * 120.78634 * 359.95733 * 6 5 4 34 34 H 1.08000 * 120.42090 * 180.02562 * 7 6 5 35 35 H 0.97005 * 120.00736 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.85037 * 22.81201 * 14 12 11 37 37 H 1.08992 * 110.15961 * 261.46292 * 14 12 11 38 38 H 1.09003 * 110.03122 * 240.86929 * 15 14 12 39 39 H 1.08997 * 110.03059 * 119.44521 * 15 14 12 40 40 H 0.96994 * 120.00372 * 180.02562 * 21 20 18 41 41 H 1.09002 * 110.75901 * 156.25533 * 26 16 15 42 42 H 1.09008 * 110.75736 * 279.44569 * 26 16 15 43 43 H 1.08004 * 119.60989 * 180.27089 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5710 -1.1698 0.1115 6 6 4.2202 -0.1922 0.8635 7 6 5.6000 -0.2337 0.9465 8 6 6.2906 -1.2451 0.2791 9 6 7.7666 -1.2995 0.3600 10 8 8.3710 -0.4659 1.0059 11 7 8.4413 -2.2733 -0.2826 12 6 9.9031 -2.3275 -0.2020 13 1 10.3192 -1.3232 -0.1225 14 6 10.3512 -3.1924 0.9969 15 6 11.5937 -3.9750 0.5370 16 6 11.8620 -3.5573 -0.9235 17 1 12.5973 -2.7535 -0.9636 18 6 12.3301 -4.7393 -1.7327 19 1 11.7201 -5.1167 -2.5401 20 6 13.5371 -5.3391 -1.4422 21 7 14.2798 -4.8800 -0.4587 22 14 14.1170 -6.8048 -2.4447 23 1 14.9154 -6.3279 -3.6025 24 1 14.9567 -7.6856 -1.5936 25 1 12.9399 -7.5660 -2.9350 26 6 10.4872 -3.0603 -1.4352 27 7 5.6378 -2.1563 -0.4332 28 6 4.3278 -2.1495 -0.5286 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6990 -2.0055 -0.0763 33 1 3.6590 0.5796 1.3692 34 1 6.1358 0.5076 1.5208 35 1 7.9590 -2.9384 -0.7984 36 1 9.5550 -3.8841 1.2724 37 1 10.6032 -2.5566 1.8454 38 1 11.4006 -5.0465 0.5895 39 1 12.4490 -3.7183 1.1619 40 1 15.1291 -5.3017 -0.2546 41 1 10.6120 -2.3714 -2.2707 42 1 9.8544 -3.9008 -1.7207 43 1 3.8314 -2.9097 -1.1136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452563860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:54 Heat of formation + Delta-G solvation = -47.182843 kcal Electronic energy + Delta-G solvation = -25221.450815 eV Core-core repulsion = 21458.944750 eV Total energy + Delta-G solvation = -3762.506065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33839 -40.03802 -38.85108 -36.97870 -35.61008 -33.74445 -32.60770 -31.96005 -31.43920 -29.49825 -28.09695 -27.02367 -24.82387 -24.00271 -23.46787 -21.52978 -20.67642 -19.87962 -18.98945 -18.55713 -17.75454 -17.53111 -16.77940 -16.30904 -15.92668 -15.31815 -14.97560 -14.91710 -14.68013 -14.53740 -14.27453 -14.03542 -13.66265 -13.45976 -13.30343 -12.89217 -12.77587 -12.45502 -12.34420 -11.77805 -11.40016 -11.18732 -10.95086 -10.83733 -10.75680 -10.55994 -10.33480 -10.16886 -9.97130 -9.90282 -9.59148 -9.53127 -9.18709 -8.79462 -8.70604 -8.49057 -8.34998 -5.97638 -4.00475 0.33479 0.95131 1.93139 2.39997 2.80325 3.32756 3.35068 3.39685 3.42582 3.74472 3.99301 4.10918 4.40050 4.46777 4.47550 4.63696 4.76860 4.78896 4.88501 5.19574 5.33883 5.34154 5.49358 5.57318 5.68859 5.76573 5.82056 5.89679 6.29652 6.36003 6.41096 6.58155 6.68400 6.71860 6.76537 6.95875 6.96697 7.29130 7.35663 7.41559 7.47619 7.74315 7.87909 7.92206 8.05198 8.43055 8.48772 9.02334 9.63303 11.12199 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.002159 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.396108 B =12966.837556 C =13543.863705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.510 3.490 3 O -0.522 6.522 4 N -0.668 5.668 5 C 0.110 3.890 6 C -0.088 4.088 7 C -0.089 4.089 8 C 0.067 3.933 9 C 0.566 3.434 10 O -0.539 6.539 11 N -0.695 5.695 12 C 0.132 3.868 13 H 0.088 0.912 14 C -0.134 4.134 15 C -0.096 4.096 16 C 0.051 3.949 17 H 0.034 0.966 18 C -0.513 4.513 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.120 4.120 27 N -0.435 5.435 28 C 0.078 3.922 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.416 0.584 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.408 0.592 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.259 0.741 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.344 5.944 2.142 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.396 6.396 4 N -0.314 5.314 5 C 0.012 3.988 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.072 4.072 9 C 0.350 3.650 10 O -0.416 6.416 11 N -0.344 5.344 12 C 0.029 3.971 13 H 0.106 0.894 14 C -0.172 4.172 15 C -0.135 4.135 16 C 0.032 3.968 17 H 0.052 0.948 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.527 5.527 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.158 4.158 27 N -0.146 5.146 28 C -0.085 4.085 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.253 0.747 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.243 0.757 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.831 6.643 2.286 28.704 hybrid contribution -0.699 -1.016 -0.349 1.282 sum -28.530 5.627 1.937 29.144 Atomic orbital electron populations 1.21866 0.90154 1.04825 1.05993 1.21146 0.91122 0.82983 0.74897 1.90783 1.70467 1.31172 1.47195 1.43557 1.04729 1.10414 1.72726 1.19003 0.84129 0.98396 0.97253 1.21574 0.94266 0.98914 0.96827 1.22066 0.93645 0.97794 0.97563 1.21304 0.94909 0.93392 0.97566 1.17777 0.85185 0.82028 0.80023 1.90783 1.68656 1.40099 1.42064 1.46086 1.08411 1.29573 1.50343 1.22212 0.76932 1.00420 0.97570 0.89385 1.22661 0.99502 0.98228 0.96854 1.22082 0.93810 0.98386 0.99186 1.19405 0.89851 0.96052 0.91495 0.94797 1.21123 1.03987 1.13905 1.16113 0.92609 1.24990 0.96660 0.97199 0.95176 1.69970 1.12547 1.41024 1.29140 0.86644 0.78705 0.82830 0.80084 1.20770 1.21343 1.19967 1.22871 0.99889 0.98243 0.94763 1.67534 1.09165 1.23231 1.14696 1.22607 0.89067 0.98688 0.98129 0.90082 0.88058 0.88128 0.74710 0.83206 0.82934 0.75662 0.93010 0.92930 0.92891 0.92556 0.93081 0.92799 0.91944 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.33 10.39 36.01 0.37 0.05 16 2 C 0.51 3.27 7.70 -10.99 -0.08 3.19 16 3 O -0.52 -5.84 14.78 5.56 0.08 -5.76 16 4 N -0.67 -3.46 5.33 -9.74 -0.05 -3.51 16 5 C 0.11 0.95 6.31 -83.54 -0.53 0.43 16 6 C -0.09 -0.93 8.75 -39.14 -0.34 -1.27 16 7 C -0.09 -1.10 9.62 -39.10 -0.38 -1.48 16 8 C 0.07 0.94 6.74 -83.02 -0.56 0.38 16 9 C 0.57 9.54 7.80 -12.30 -0.10 9.44 16 10 O -0.54 -10.57 15.96 5.33 0.09 -10.49 16 11 N -0.70 -11.53 5.09 -53.01 -0.27 -11.80 16 12 C 0.13 2.51 3.23 -66.16 -0.21 2.30 16 13 H 0.09 1.77 7.56 -51.93 -0.39 1.38 16 14 C -0.13 -2.67 6.55 -25.51 -0.17 -2.83 16 15 C -0.10 -2.25 5.60 -25.62 -0.14 -2.40 16 16 C 0.05 1.26 2.73 -90.12 -0.25 1.01 16 17 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 18 C -0.51 -13.93 8.36 -34.44 -0.29 -14.22 16 19 H 0.06 1.49 7.77 -52.48 -0.41 1.08 16 20 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 21 N -0.89 -25.65 12.63 55.43 0.70 -24.95 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.12 -2.43 5.89 -24.74 -0.15 -2.58 16 27 N -0.44 -5.36 9.52 -9.64 -0.09 -5.45 16 28 C 0.08 0.71 11.12 -17.34 -0.19 0.51 16 29 H 0.08 -0.06 7.92 -51.93 -0.41 -0.47 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.42 0.54 8.66 -40.82 -0.35 0.18 16 33 H 0.15 1.54 6.47 -52.49 -0.34 1.20 16 34 H 0.15 1.83 7.63 -52.49 -0.40 1.43 16 35 H 0.41 6.11 7.88 -40.82 -0.32 5.79 16 36 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.30 7.83 -51.93 -0.41 0.90 16 39 H 0.06 1.41 8.06 -51.93 -0.42 0.99 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.23 7.92 -51.92 -0.41 0.82 16 43 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -34.38 363.13 -8.15 -42.53 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.95 Total: 3.58 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.10 Total: -5.87 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.29 Total: -45.71 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.17 Total: -16.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.38 -8.15 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452563860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.649 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds