Wall clock time and date at job start Tue Mar 31 2020 11:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21273 * 120.00087 * 2 1 4 4 N 1.34774 * 119.99643 * 179.97438 * 2 1 3 5 5 C 1.39457 * 119.99848 * 185.27366 * 4 2 1 6 6 C 1.39379 * 120.39578 * 32.87995 * 5 4 2 7 7 C 1.38288 * 118.42854 * 179.97438 * 6 5 4 8 8 C 1.39477 * 119.15156 * 0.02562 * 7 6 5 9 9 C 1.47923 * 119.64430 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99957 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99892 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99768 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.53829 * 327.61235 * 12 11 9 14 14 C 1.54469 * 110.66218 * 90.24055 * 12 11 9 15 15 C 1.53873 * 106.68295 * 142.05100 * 14 12 11 16 16 C 1.54261 * 106.60056 * 0.15871 * 15 14 12 17 17 H 1.09008 * 110.59794 * 95.12601 * 16 15 14 18 18 C 1.50697 * 110.48553 * 217.70873 * 16 15 14 19 19 H 1.08003 * 120.00131 * 114.77599 * 18 16 15 20 20 C 1.37876 * 120.00074 * 294.77513 * 18 16 15 21 21 N 1.31516 * 120.00438 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 120.00111 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47211 * 90.00150 * 22 20 18 24 24 H 1.48497 * 109.47304 * 210.00444 * 22 20 18 25 25 H 1.48507 * 109.46937 * 330.00450 * 22 20 18 26 26 C 1.54882 * 104.19893 * 336.38983 * 16 15 14 27 27 N 1.32809 * 120.71498 * 0.27633 * 8 7 6 28 28 C 1.31351 * 121.70985 * 359.43351 * 27 8 7 29 29 H 1.09000 * 109.47014 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47228 * 300.00347 * 1 2 3 31 31 H 1.09004 * 109.46593 * 60.00514 * 1 2 3 32 32 H 0.96998 * 120.00615 * 5.27287 * 4 2 1 33 33 H 1.07991 * 120.78634 * 359.95733 * 6 5 4 34 34 H 1.08000 * 120.42090 * 180.02562 * 7 6 5 35 35 H 0.97005 * 120.00736 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.85037 * 22.81201 * 14 12 11 37 37 H 1.08992 * 110.15961 * 261.46292 * 14 12 11 38 38 H 1.09003 * 110.03122 * 240.86929 * 15 14 12 39 39 H 1.08997 * 110.03059 * 119.44521 * 15 14 12 40 40 H 0.96994 * 120.00372 * 180.02562 * 21 20 18 41 41 H 1.09002 * 110.75901 * 156.25533 * 26 16 15 42 42 H 1.09008 * 110.75736 * 279.44569 * 26 16 15 43 43 H 1.08004 * 119.60989 * 180.27089 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5710 -1.1698 0.1115 6 6 4.2202 -0.1922 0.8635 7 6 5.6000 -0.2337 0.9465 8 6 6.2906 -1.2451 0.2791 9 6 7.7666 -1.2995 0.3600 10 8 8.3710 -0.4659 1.0059 11 7 8.4413 -2.2733 -0.2826 12 6 9.9031 -2.3275 -0.2020 13 1 10.3192 -1.3232 -0.1225 14 6 10.3512 -3.1924 0.9969 15 6 11.5937 -3.9750 0.5370 16 6 11.8620 -3.5573 -0.9235 17 1 12.5973 -2.7535 -0.9636 18 6 12.3301 -4.7393 -1.7327 19 1 11.7201 -5.1167 -2.5401 20 6 13.5371 -5.3391 -1.4422 21 7 14.2798 -4.8800 -0.4587 22 14 14.1170 -6.8048 -2.4447 23 1 14.9154 -6.3279 -3.6025 24 1 14.9567 -7.6856 -1.5936 25 1 12.9399 -7.5660 -2.9350 26 6 10.4872 -3.0603 -1.4352 27 7 5.6378 -2.1563 -0.4332 28 6 4.3278 -2.1495 -0.5286 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6990 -2.0055 -0.0763 33 1 3.6590 0.5796 1.3692 34 1 6.1358 0.5076 1.5208 35 1 7.9590 -2.9384 -0.7984 36 1 9.5550 -3.8841 1.2724 37 1 10.6032 -2.5566 1.8454 38 1 11.4006 -5.0465 0.5895 39 1 12.4490 -3.7183 1.1619 40 1 15.1291 -5.3017 -0.2546 41 1 10.6120 -2.3714 -2.2707 42 1 9.8544 -3.9008 -1.7207 43 1 3.8314 -2.9097 -1.1136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452563860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:53 Heat of formation + Delta-G solvation = -71.698225 kcal Electronic energy + Delta-G solvation = -25222.513881 eV Core-core repulsion = 21458.944750 eV Total energy + Delta-G solvation = -3763.569132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.10997 -41.03527 -39.93992 -38.62048 -36.30516 -35.38201 -33.94453 -33.32606 -32.13432 -30.18360 -29.87398 -28.62162 -26.08967 -25.36842 -24.55366 -22.43724 -21.59958 -21.50895 -20.79561 -19.37471 -18.78640 -18.47521 -18.09741 -17.50774 -16.82667 -16.60129 -16.53268 -16.14481 -15.93485 -15.76063 -15.42910 -14.97667 -14.68213 -14.50998 -14.26473 -14.06589 -13.75692 -13.66975 -13.29574 -13.12702 -13.06947 -12.79226 -12.56354 -12.41757 -12.15490 -12.10355 -11.70470 -11.46856 -11.41590 -11.31463 -11.08696 -10.89910 -10.75373 -10.53762 -10.46577 -10.06199 -9.44999 -8.09309 -6.19110 -0.56351 0.13327 1.33658 1.44196 1.44591 1.54889 1.74726 1.91558 2.09822 2.46445 2.77011 3.10672 3.21974 3.58519 3.68714 3.77792 3.86945 3.94832 4.00267 4.08068 4.19948 4.51981 4.57998 4.65628 4.67270 4.74046 4.78030 4.85202 4.93395 4.99435 5.00279 5.04684 5.13995 5.16568 5.30126 5.41645 5.54682 5.60548 5.67352 5.91843 5.98332 6.29169 6.38254 6.41783 6.72481 6.92064 7.01271 7.14569 7.48371 9.00239 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.002159 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.396108 B =12966.837556 C =13543.863705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.506 3.494 3 O -0.574 6.574 4 N -0.650 5.650 5 C 0.127 3.873 6 C -0.098 4.098 7 C -0.093 4.093 8 C 0.041 3.959 9 C 0.566 3.434 10 O -0.575 6.575 11 N -0.688 5.688 12 C 0.145 3.855 13 H 0.074 0.926 14 C -0.122 4.122 15 C -0.085 4.085 16 C 0.040 3.960 17 H 0.001 0.999 18 C -0.527 4.527 19 H 0.060 0.940 20 C 0.008 3.992 21 N -0.922 5.922 22 Si 0.956 3.044 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.105 4.105 27 N -0.446 5.446 28 C 0.085 3.915 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.438 0.562 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.259 0.741 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.124 4.419 0.938 33.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.297 3.703 3 O -0.452 6.452 4 N -0.299 5.299 5 C 0.028 3.972 6 C -0.125 4.125 7 C -0.115 4.115 8 C -0.096 4.096 9 C 0.352 3.648 10 O -0.455 6.455 11 N -0.338 5.338 12 C 0.041 3.959 13 H 0.093 0.907 14 C -0.161 4.161 15 C -0.123 4.123 16 C 0.021 3.979 17 H 0.019 0.981 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.190 4.190 21 N -0.562 5.562 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.143 4.143 27 N -0.157 5.157 28 C -0.079 4.079 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.280 0.720 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -31.669 5.075 1.066 32.091 hybrid contribution 0.319 -0.510 0.017 0.602 sum -31.350 4.565 1.083 31.699 Atomic orbital electron populations 1.21922 0.86212 1.07335 1.06464 1.22059 0.92868 0.82168 0.73167 1.90775 1.71796 1.33123 1.49522 1.43577 1.03197 1.11566 1.71524 1.19110 0.85905 0.96999 0.95226 1.21613 0.93540 0.99782 0.97612 1.22018 0.94490 0.97410 0.97548 1.20799 0.93149 0.95343 1.00341 1.18207 0.86588 0.81074 0.78935 1.90754 1.69851 1.41317 1.43545 1.45866 1.07125 1.30074 1.50706 1.21825 0.78605 0.99197 0.96314 0.90733 1.22521 0.98221 0.98185 0.97197 1.21854 0.94456 0.97819 0.98213 1.19392 0.91470 0.94649 0.92397 0.98112 1.21502 1.04256 1.14438 1.16293 0.92161 1.25816 0.96952 1.00024 0.96255 1.70111 1.12885 1.42442 1.30722 0.85593 0.78382 0.79426 0.78469 1.20333 1.21301 1.18795 1.22671 0.97511 0.98785 0.95331 1.67479 1.10792 1.22812 1.14612 1.23259 0.87949 0.99158 0.97524 0.86611 0.87467 0.87568 0.71990 0.83233 0.83749 0.74472 0.91426 0.92968 0.94326 0.95224 0.93193 0.92034 0.90712 0.77633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.03 10.39 71.24 0.74 0.71 16 2 C 0.51 5.14 7.70 87.66 0.67 5.81 16 3 O -0.57 -12.22 14.78 -3.01 -0.04 -12.27 16 4 N -0.65 -4.40 5.33 -303.11 -1.62 -6.02 16 5 C 0.13 1.87 6.31 38.48 0.24 2.11 16 6 C -0.10 -1.98 8.75 22.56 0.20 -1.79 16 7 C -0.09 -2.32 9.62 22.58 0.22 -2.10 16 8 C 0.04 1.12 6.74 41.86 0.28 1.40 16 9 C 0.57 19.21 7.80 86.81 0.68 19.89 16 10 O -0.58 -23.26 15.96 -3.85 -0.06 -23.32 16 11 N -0.69 -22.47 5.09 -439.90 -2.24 -24.71 16 12 C 0.15 5.54 3.23 46.14 0.15 5.69 16 13 H 0.07 3.08 7.56 -2.39 -0.02 3.06 16 14 C -0.12 -4.93 6.55 31.39 0.21 -4.72 16 15 C -0.08 -4.10 5.60 31.32 0.18 -3.92 16 16 C 0.04 2.02 2.73 -10.47 -0.03 2.00 16 17 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 18 C -0.53 -28.86 8.36 25.60 0.21 -28.64 16 19 H 0.06 3.17 7.77 -2.91 -0.02 3.15 16 20 C 0.01 0.45 5.35 84.65 0.45 0.90 16 21 N -0.92 -54.64 12.63 21.45 0.27 -54.37 16 22 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.10 -4.25 5.89 31.88 0.19 -4.06 16 27 N -0.45 -10.10 9.52 -184.42 -1.76 -11.85 16 28 C 0.09 1.26 11.12 85.04 0.95 2.20 16 29 H 0.12 -0.77 7.92 -2.39 -0.02 -0.79 16 30 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.44 -1.01 8.66 -92.71 -0.80 -1.81 16 33 H 0.15 3.05 6.47 -2.91 -0.02 3.03 16 34 H 0.14 3.69 7.63 -2.91 -0.02 3.67 16 35 H 0.42 11.94 7.88 -92.70 -0.73 11.21 16 36 H 0.07 2.50 8.04 -2.38 -0.02 2.48 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.93 7.83 -2.39 -0.02 1.92 16 39 H 0.03 1.54 8.06 -2.39 -0.02 1.52 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.07 2.84 7.92 -2.38 -0.02 2.83 16 43 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -77.87 363.13 1.43 -76.44 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.48 Total: 14.83 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.33 Total: -4.52 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -5.34 Total: -96.94 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.11 Total: -35.58 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -77.87 1.43 -76.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452563860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.744 kcal (2) G-P(sol) polarization free energy of solvation -77.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds