Wall clock time and date at job start Tue Mar 31 2020 11:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00066 * 2 1 4 4 C 1.53009 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46978 * 64.99784 * 4 3 2 6 6 C 1.37097 * 120.00234 * 269.99704 * 5 4 3 7 7 H 1.08001 * 120.00120 * 145.15055 * 6 5 4 8 8 C 1.38959 * 119.99987 * 325.15391 * 6 5 4 9 9 N 1.31408 * 119.99879 * 337.42473 * 8 6 5 10 10 Si 1.86801 * 120.00073 * 157.42647 * 8 6 5 11 11 H 1.48498 * 109.47090 * 89.99547 * 10 8 6 12 12 H 1.48494 * 109.47026 * 209.99913 * 10 8 6 13 13 H 1.48502 * 109.47114 * 329.99976 * 10 8 6 14 14 C 1.34774 * 120.00042 * 90.00260 * 5 4 3 15 15 O 1.21293 * 119.99989 * 4.89955 * 14 5 4 16 16 C 1.50700 * 120.00051 * 184.89529 * 14 5 4 17 17 C 1.53007 * 109.46909 * 177.65949 * 16 14 5 18 18 N 1.46500 * 109.46568 * 180.02562 * 17 16 14 19 19 C 1.36035 * 126.35086 * 264.68497 * 18 17 16 20 20 N 1.30113 * 110.10431 * 179.88281 * 19 18 17 21 21 C 1.35791 * 109.64012 * 0.39199 * 20 19 18 22 22 C 1.39734 * 133.60287 * 179.75976 * 21 20 19 23 23 C 1.36606 * 119.88589 * 179.97438 * 22 21 20 24 24 C 1.38773 * 120.67214 * 359.97438 * 23 22 21 25 25 C 1.37858 * 120.44787 * 0.03536 * 24 23 22 26 26 C 1.38055 * 126.34840 * 85.00716 * 18 17 16 27 27 H 1.09002 * 109.46957 * 60.00518 * 1 2 3 28 28 H 1.08996 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47660 * 300.00162 * 1 2 3 30 30 H 1.08993 * 109.47471 * 60.00230 * 3 2 1 31 31 H 1.08998 * 109.47377 * 299.99553 * 3 2 1 32 32 H 1.09005 * 109.46826 * 304.99897 * 4 3 2 33 33 H 1.09002 * 109.46722 * 185.00171 * 4 3 2 34 34 H 0.97001 * 120.00184 * 185.02884 * 9 8 6 35 35 H 1.08995 * 109.47364 * 297.66063 * 16 14 5 36 36 H 1.08997 * 109.47120 * 57.66217 * 16 14 5 37 37 H 1.08996 * 109.46938 * 299.99736 * 17 16 14 38 38 H 1.08997 * 109.47011 * 60.00201 * 17 16 14 39 39 H 1.08002 * 124.95016 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.05803 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.66046 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.78099 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.15164 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.0979 -0.7992 -1.3345 7 1 3.8652 -1.3063 -2.2592 8 6 4.5203 -1.5283 -0.2295 9 7 5.2120 -0.9401 0.7205 10 14 4.1048 -3.3445 -0.0944 11 1 5.1832 -4.1472 -0.7251 12 1 3.9816 -3.7189 1.3373 13 1 2.8191 -3.6111 -0.7882 14 6 4.2634 1.3327 -2.3199 15 8 4.2423 2.5414 -2.2208 16 6 4.6102 0.6907 -3.6385 17 6 4.8332 1.7777 -4.6920 18 7 5.1698 1.1535 -5.9739 19 6 6.4212 0.9372 -6.4614 20 7 6.3540 0.3605 -7.6258 21 6 5.0533 0.1750 -7.9689 22 6 4.4206 -0.3797 -9.0845 23 6 3.0565 -0.4259 -9.1404 24 6 2.2879 0.0730 -8.0982 25 6 2.8905 0.6249 -6.9879 26 6 4.2757 0.6814 -6.9138 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8507 0.5684 0.8428 33 1 3.9784 2.1765 0.0902 34 1 5.5692 -1.4631 1.4552 35 1 5.5198 0.1006 -3.5272 36 1 3.7926 0.0422 -3.9531 37 1 3.9236 2.3678 -4.8033 38 1 5.6508 2.4262 -4.3774 39 1 7.3372 1.2032 -5.9548 40 1 5.0090 -0.7712 -9.9011 41 1 2.5712 -0.8550 -10.0046 42 1 1.2105 0.0287 -8.1573 43 1 2.2877 1.0114 -6.1793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457181109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:45 Heat of formation + Delta-G solvation = 1.746865 kcal Electronic energy + Delta-G solvation = -26515.364136 eV Core-core repulsion = 22754.979822 eV Total energy + Delta-G solvation = -3760.384314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98298 -38.87614 -37.28979 -37.03103 -35.00165 -34.36743 -31.67144 -31.17629 -29.87013 -29.20633 -28.70979 -25.91339 -24.95740 -24.12577 -23.13833 -22.01726 -21.62004 -20.24821 -19.14943 -17.27653 -17.12345 -16.83166 -16.03684 -15.72012 -15.52402 -15.31177 -15.20991 -14.77887 -14.41343 -14.38689 -14.03083 -13.84269 -13.71213 -13.43682 -12.95268 -12.51577 -12.22728 -12.04027 -11.95233 -11.63894 -11.50943 -11.34507 -11.21696 -11.17029 -11.04343 -10.78977 -10.68864 -10.40407 -10.25279 -10.08997 -9.81634 -9.25096 -9.04575 -8.61779 -8.24501 -7.98476 -7.59920 -6.41717 -4.05525 1.06508 1.62790 2.77746 2.95052 3.11081 3.22645 3.28926 3.71704 3.98466 4.09830 4.38296 4.44208 4.57527 4.76324 4.93229 5.02905 5.06606 5.15127 5.33421 5.50926 5.52587 5.59858 5.63385 5.65436 5.68443 5.77502 5.89511 5.93188 5.99333 6.07413 6.21664 6.25901 6.30227 6.38676 6.57138 6.57689 6.63580 6.65882 6.95677 7.20384 7.28801 7.43523 7.72852 7.91388 7.99789 8.28542 9.02663 9.38546 9.80265 10.61081 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.003744 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.437825 B = 7477.236188 C = 7651.330433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.107 3.893 5 N -0.420 5.420 6 C -0.330 4.330 7 H 0.087 0.913 8 C 0.055 3.945 9 N -0.861 5.861 10 Si 0.915 3.085 11 H -0.280 1.280 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.466 3.534 15 O -0.616 6.616 16 C -0.132 4.132 17 C 0.127 3.873 18 N -0.484 5.484 19 C 0.265 3.735 20 N -0.506 5.506 21 C 0.042 3.958 22 C -0.069 4.069 23 C -0.132 4.132 24 C -0.109 4.109 25 C -0.104 4.104 26 C 0.049 3.951 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.271 0.729 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.212 0.788 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 1.774 -9.399 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.137 5.137 6 C -0.458 4.458 7 H 0.105 0.895 8 C -0.151 4.151 9 N -0.498 5.498 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.255 3.745 15 O -0.504 6.504 16 C -0.173 4.173 17 C 0.005 3.995 18 N -0.172 5.172 19 C -0.021 4.021 20 N -0.225 5.225 21 C -0.076 4.076 22 C -0.088 4.088 23 C -0.153 4.153 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.061 4.061 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.229 0.771 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.295 1.959 -9.455 10.568 hybrid contribution -1.090 -0.574 0.906 1.529 sum -5.385 1.385 -8.549 10.198 Atomic orbital electron populations 1.22649 0.83465 1.01779 0.98802 1.88162 1.17311 1.27543 1.95003 1.23009 0.96421 0.84420 0.98475 1.21569 0.89353 0.99333 0.91391 1.43316 1.54947 1.06358 1.09053 1.19255 1.46200 0.80464 0.99886 0.89548 1.25207 0.94099 0.99983 0.95801 1.69800 1.30181 1.37009 1.12791 0.86126 0.79294 0.82618 0.77775 1.20594 1.20741 1.19213 1.20014 0.81302 0.86628 0.86568 1.90532 1.59527 1.14441 1.85922 1.21655 1.04293 0.98109 0.93264 1.21684 1.03887 0.95054 0.78865 1.45700 1.06019 1.48868 1.16655 1.25373 0.88819 0.96488 0.91412 1.70462 1.19042 1.19972 1.13043 1.19101 0.89290 1.03461 0.95773 1.19956 0.93992 0.98976 0.95901 1.20583 0.93186 1.02173 0.99337 1.20837 0.99664 0.99115 0.93276 1.20041 0.90354 1.02569 0.99473 1.18944 0.92728 1.02789 0.91623 0.95028 0.90420 0.95141 0.94199 0.94461 0.86366 0.90866 0.91908 0.88812 0.89864 0.89073 0.87999 0.77111 0.85755 0.85729 0.85569 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.49 10.18 -35.23 -0.36 -7.85 16 3 C 0.05 1.09 6.28 37.16 0.23 1.32 16 4 C 0.11 2.45 5.47 -4.04 -0.02 2.43 16 5 N -0.42 -10.03 2.52 -114.80 -0.29 -10.32 16 6 C -0.33 -8.12 8.23 -14.93 -0.12 -8.25 16 7 H 0.09 2.08 6.96 -52.49 -0.37 1.72 16 8 C 0.06 1.37 4.95 -17.47 -0.09 1.28 16 9 N -0.86 -22.17 11.34 55.50 0.63 -21.54 16 10 Si 0.92 19.82 29.61 -169.99 -5.03 14.78 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.47 10.40 7.62 -10.99 -0.08 10.32 16 15 O -0.62 -14.62 15.54 5.55 0.09 -14.54 16 16 C -0.13 -2.42 4.65 -27.88 -0.13 -2.55 16 17 C 0.13 1.95 5.45 -4.04 -0.02 1.93 16 18 N -0.48 -7.30 2.80 -115.79 -0.32 -7.62 16 19 C 0.26 3.77 12.49 -89.78 -1.12 2.64 16 20 N -0.51 -8.22 11.27 -12.05 -0.14 -8.35 16 21 C 0.04 0.68 7.23 -84.70 -0.61 0.07 16 22 C -0.07 -0.92 10.05 -39.61 -0.40 -1.32 16 23 C -0.13 -1.51 9.96 -39.97 -0.40 -1.91 16 24 C -0.11 -1.29 10.03 -39.52 -0.40 -1.68 16 25 C -0.10 -1.44 10.05 -39.50 -0.40 -1.84 16 26 C 0.05 0.77 6.87 -83.99 -0.58 0.19 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.12 2.94 5.37 -51.93 -0.28 2.66 16 33 H 0.07 1.67 7.36 -51.93 -0.38 1.29 16 34 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 35 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 36 H 0.08 1.54 7.68 -51.93 -0.40 1.14 16 37 H 0.09 1.41 8.12 -51.93 -0.42 0.99 16 38 H 0.10 1.49 8.07 -51.93 -0.42 1.07 16 39 H 0.21 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -30.40 365.91 -8.98 -39.39 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.05 Total: 6.32 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -3.02 Total: 4.22 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.12 Total: -47.83 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.27 Total: -22.39 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.40 -8.98 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.132 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds