Wall clock time and date at job start Tue Mar 31 2020 11:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00066 * 2 1 4 4 C 1.53009 * 109.47050 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46978 * 64.99784 * 4 3 2 6 6 C 1.37097 * 120.00234 * 269.99704 * 5 4 3 7 7 H 1.08001 * 120.00120 * 145.15055 * 6 5 4 8 8 C 1.38959 * 119.99987 * 325.15391 * 6 5 4 9 9 N 1.31408 * 119.99879 * 337.42473 * 8 6 5 10 10 Si 1.86801 * 120.00073 * 157.42647 * 8 6 5 11 11 H 1.48498 * 109.47090 * 89.99547 * 10 8 6 12 12 H 1.48494 * 109.47026 * 209.99913 * 10 8 6 13 13 H 1.48502 * 109.47114 * 329.99976 * 10 8 6 14 14 C 1.34774 * 120.00042 * 90.00260 * 5 4 3 15 15 O 1.21293 * 119.99989 * 4.89955 * 14 5 4 16 16 C 1.50700 * 120.00051 * 184.89529 * 14 5 4 17 17 C 1.53007 * 109.46909 * 177.65949 * 16 14 5 18 18 N 1.46500 * 109.46568 * 180.02562 * 17 16 14 19 19 C 1.36035 * 126.35086 * 264.68497 * 18 17 16 20 20 N 1.30113 * 110.10431 * 179.88281 * 19 18 17 21 21 C 1.35791 * 109.64012 * 0.39199 * 20 19 18 22 22 C 1.39734 * 133.60287 * 179.75976 * 21 20 19 23 23 C 1.36606 * 119.88589 * 179.97438 * 22 21 20 24 24 C 1.38773 * 120.67214 * 359.97438 * 23 22 21 25 25 C 1.37858 * 120.44787 * 0.03536 * 24 23 22 26 26 C 1.38055 * 126.34840 * 85.00716 * 18 17 16 27 27 H 1.09002 * 109.46957 * 60.00518 * 1 2 3 28 28 H 1.08996 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47660 * 300.00162 * 1 2 3 30 30 H 1.08993 * 109.47471 * 60.00230 * 3 2 1 31 31 H 1.08998 * 109.47377 * 299.99553 * 3 2 1 32 32 H 1.09005 * 109.46826 * 304.99897 * 4 3 2 33 33 H 1.09002 * 109.46722 * 185.00171 * 4 3 2 34 34 H 0.97001 * 120.00184 * 185.02884 * 9 8 6 35 35 H 1.08995 * 109.47364 * 297.66063 * 16 14 5 36 36 H 1.08997 * 109.47120 * 57.66217 * 16 14 5 37 37 H 1.08996 * 109.46938 * 299.99736 * 17 16 14 38 38 H 1.08997 * 109.47011 * 60.00201 * 17 16 14 39 39 H 1.08002 * 124.95016 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.05803 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.66046 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.78099 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.15164 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.0979 -0.7992 -1.3345 7 1 3.8652 -1.3063 -2.2592 8 6 4.5203 -1.5283 -0.2295 9 7 5.2120 -0.9401 0.7205 10 14 4.1048 -3.3445 -0.0944 11 1 5.1832 -4.1472 -0.7251 12 1 3.9816 -3.7189 1.3373 13 1 2.8191 -3.6111 -0.7882 14 6 4.2634 1.3327 -2.3199 15 8 4.2423 2.5414 -2.2208 16 6 4.6102 0.6907 -3.6385 17 6 4.8332 1.7777 -4.6920 18 7 5.1698 1.1535 -5.9739 19 6 6.4212 0.9372 -6.4614 20 7 6.3540 0.3605 -7.6258 21 6 5.0533 0.1750 -7.9689 22 6 4.4206 -0.3797 -9.0845 23 6 3.0565 -0.4259 -9.1404 24 6 2.2879 0.0730 -8.0982 25 6 2.8905 0.6249 -6.9879 26 6 4.2757 0.6814 -6.9138 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8507 0.5684 0.8428 33 1 3.9784 2.1765 0.0902 34 1 5.5692 -1.4631 1.4552 35 1 5.5198 0.1006 -3.5272 36 1 3.7926 0.0422 -3.9531 37 1 3.9236 2.3678 -4.8033 38 1 5.6508 2.4262 -4.3774 39 1 7.3372 1.2032 -5.9548 40 1 5.0090 -0.7712 -9.9011 41 1 2.5712 -0.8550 -10.0046 42 1 1.2105 0.0287 -8.1573 43 1 2.2877 1.0114 -6.1793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457181109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:44 Heat of formation + Delta-G solvation = -14.047838 kcal Electronic energy + Delta-G solvation = -26516.049045 eV Core-core repulsion = 22754.979822 eV Total energy + Delta-G solvation = -3761.069223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.07196 -40.62634 -38.63819 -38.21683 -36.70404 -35.71327 -33.53997 -32.46247 -31.20371 -30.24022 -30.09361 -27.30714 -26.70406 -25.55089 -24.15841 -23.38644 -22.89318 -21.39601 -20.94764 -18.84841 -18.35198 -18.15590 -17.51179 -17.17818 -16.85304 -16.67881 -16.50112 -16.27928 -16.07612 -15.90576 -15.48009 -15.00693 -14.86104 -14.50514 -14.43648 -14.00408 -13.70525 -13.49698 -13.33194 -12.93634 -12.90253 -12.82706 -12.58544 -12.51463 -12.47810 -12.34386 -12.21165 -12.12298 -11.80634 -11.38614 -11.05207 -10.94030 -10.54532 -10.39102 -9.46320 -9.30218 -9.05018 -8.29155 -5.97367 0.04545 0.60459 1.38432 1.47547 1.57237 1.63161 1.86279 1.94781 2.33081 2.91096 2.95865 3.00488 3.18753 3.38016 3.69453 3.72588 3.93095 4.08531 4.19466 4.23478 4.24858 4.39862 4.44769 4.51836 4.52369 4.53970 4.55805 4.61661 4.62519 4.78363 4.80684 4.85097 4.90200 4.94812 5.26791 5.36125 5.51982 5.53548 5.60673 5.63005 5.98049 5.99455 6.19443 6.40252 6.41723 6.89469 7.14764 7.56530 7.97267 8.74063 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.003744 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.437825 B = 7477.236188 C = 7651.330433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.105 3.895 5 N -0.434 5.434 6 C -0.336 4.336 7 H 0.087 0.913 8 C 0.019 3.981 9 N -0.890 5.890 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.460 3.540 15 O -0.632 6.632 16 C -0.117 4.117 17 C 0.143 3.857 18 N -0.489 5.489 19 C 0.262 3.738 20 N -0.532 5.532 21 C 0.013 3.987 22 C -0.083 4.083 23 C -0.123 4.123 24 C -0.101 4.101 25 C -0.124 4.124 26 C 0.026 3.974 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.271 0.729 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.244 0.756 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 1.055 -10.569 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.012 4.012 4 C -0.019 4.019 5 N -0.151 5.151 6 C -0.464 4.464 7 H 0.105 0.895 8 C -0.185 4.185 9 N -0.527 5.527 10 Si 0.795 3.205 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.250 3.750 15 O -0.522 6.522 16 C -0.158 4.158 17 C 0.021 3.979 18 N -0.177 5.177 19 C -0.023 4.023 20 N -0.252 5.252 21 C -0.105 4.105 22 C -0.103 4.103 23 C -0.143 4.143 24 C -0.121 4.121 25 C -0.145 4.145 26 C -0.083 4.083 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.259 0.741 40 H 0.155 0.845 41 H 0.179 0.821 42 H 0.175 0.825 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.802 1.237 -10.647 12.188 hybrid contribution -0.694 -0.327 1.214 1.436 sum -6.496 0.909 -9.434 11.490 Atomic orbital electron populations 1.22879 0.80792 1.03206 1.00303 1.88091 1.20294 1.27771 1.95290 1.22813 0.94323 0.84649 0.99463 1.21511 0.91646 0.98149 0.90622 1.43522 1.55476 1.06433 1.09667 1.19394 1.46017 0.80928 1.00056 0.89508 1.25851 0.93880 1.03210 0.95517 1.69891 1.31214 1.38241 1.13379 0.85285 0.78985 0.78719 0.77499 1.20053 1.20797 1.19147 1.20619 0.80420 0.86517 0.87477 1.90509 1.60029 1.15202 1.86431 1.21502 1.03723 0.98592 0.91980 1.21442 1.04200 0.93891 0.78402 1.45654 1.06387 1.49346 1.16352 1.26029 0.89535 0.95653 0.91124 1.70436 1.19610 1.21054 1.14061 1.19550 0.89400 1.04613 0.96935 1.20305 0.95144 0.99114 0.95715 1.21016 0.92443 1.00685 1.00137 1.21281 1.01342 0.97203 0.92240 1.20297 0.89853 1.03664 1.00657 1.19290 0.93564 1.03574 0.91900 0.94049 0.89112 0.93026 0.91606 0.94852 0.88419 0.91798 0.91881 0.89239 0.90137 0.89238 0.87140 0.74055 0.84481 0.82141 0.82457 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -15.99 10.18 -148.98 -1.52 -17.51 16 3 C 0.07 2.56 6.28 71.99 0.45 3.01 16 4 C 0.10 4.85 5.47 86.38 0.47 5.32 16 5 N -0.43 -20.94 2.52 -635.52 -1.60 -22.54 16 6 C -0.34 -16.60 8.23 84.04 0.69 -15.91 16 7 H 0.09 4.19 6.96 -2.91 -0.02 4.17 16 8 C 0.02 0.93 4.95 84.93 0.42 1.35 16 9 N -0.89 -46.37 11.34 21.67 0.25 -46.12 16 10 Si 0.97 40.42 29.61 68.60 2.03 42.45 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 12 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 14 C 0.46 20.68 7.62 87.66 0.67 21.35 16 15 O -0.63 -30.19 15.54 -3.07 -0.05 -30.24 16 16 C -0.12 -4.29 4.65 29.85 0.14 -4.15 16 17 C 0.14 4.35 5.45 86.38 0.47 4.82 16 18 N -0.49 -14.57 2.80 -520.25 -1.46 -16.03 16 19 C 0.26 7.33 12.49 180.06 2.25 9.58 16 20 N -0.53 -17.19 11.27 -192.03 -2.17 -19.35 16 21 C 0.01 0.41 7.23 39.45 0.29 0.69 16 22 C -0.08 -2.11 10.05 22.25 0.22 -1.89 16 23 C -0.12 -2.46 9.96 22.02 0.22 -2.24 16 24 C -0.10 -2.13 10.03 22.31 0.22 -1.90 16 25 C -0.12 -3.31 10.05 22.32 0.22 -3.08 16 26 C 0.03 0.79 6.87 38.86 0.27 1.06 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 4.97 5.37 -2.38 -0.01 4.96 16 33 H 0.06 2.99 7.36 -2.39 -0.02 2.98 16 34 H 0.27 13.43 8.32 -92.71 -0.77 12.66 16 35 H 0.09 3.35 8.10 -2.39 -0.02 3.33 16 36 H 0.08 2.98 7.68 -2.39 -0.02 2.97 16 37 H 0.09 2.76 8.12 -2.39 -0.02 2.74 16 38 H 0.11 3.16 8.07 -2.39 -0.02 3.14 16 39 H 0.24 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -65.75 365.91 4.75 -61.00 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 1.01 Total: 28.37 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 8.26 Total: 19.97 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -4.98 Total: -104.04 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.56 Total: -47.74 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -65.75 4.75 -61.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.949 kcal (2) G-P(sol) polarization free energy of solvation -65.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds