Wall clock time and date at job start Tue Mar 31 2020 11:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00603 * 2 1 4 4 C 1.52997 * 109.47140 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46818 * 65.00401 * 4 3 2 6 6 C 1.37102 * 119.99719 * 264.54417 * 5 4 3 7 7 H 1.07995 * 119.99835 * 145.65379 * 6 5 4 8 8 C 1.38947 * 120.00077 * 325.65392 * 6 5 4 9 9 N 1.31409 * 120.00305 * 338.16288 * 8 6 5 10 10 Si 1.86803 * 119.99865 * 158.15532 * 8 6 5 11 11 H 1.48504 * 109.46831 * 60.00442 * 10 8 6 12 12 H 1.48497 * 109.46984 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47515 * 300.00356 * 10 8 6 14 14 C 1.34773 * 120.00034 * 84.55034 * 5 4 3 15 15 O 1.21288 * 120.00172 * 359.97438 * 14 5 4 16 16 C 1.50707 * 119.99706 * 179.97438 * 14 5 4 17 17 C 1.52999 * 109.46894 * 179.97438 * 16 14 5 18 18 C 1.50698 * 109.47008 * 179.97438 * 17 16 14 19 19 N 1.30112 * 124.95057 * 304.97815 * 18 17 16 20 20 C 1.35790 * 109.64320 * 180.02562 * 19 18 17 21 21 C 1.39737 * 133.60472 * 179.97438 * 20 19 18 22 22 C 1.36596 * 119.88768 * 179.72944 * 21 20 19 23 23 C 1.38777 * 120.67056 * 0.28307 * 22 21 20 24 24 C 1.37850 * 120.44962 * 359.97438 * 23 22 21 25 25 C 1.38837 * 119.68990 * 0.02562 * 24 23 22 26 26 N 1.36046 * 124.95120 * 125.59610 * 18 17 16 27 27 H 0.97003 * 126.34063 * 359.39768 * 26 18 17 28 28 H 1.09003 * 109.47002 * 59.99314 * 1 2 3 29 29 H 1.08997 * 109.47703 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46754 * 300.00643 * 1 2 3 31 31 H 1.09000 * 109.46915 * 59.99808 * 3 2 1 32 32 H 1.09000 * 109.47335 * 300.00340 * 3 2 1 33 33 H 1.08994 * 109.47494 * 305.00052 * 4 3 2 34 34 H 1.09005 * 109.46950 * 185.00172 * 4 3 2 35 35 H 0.97001 * 120.00434 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46954 * 60.00121 * 16 14 5 37 37 H 1.08997 * 109.47288 * 300.00337 * 16 14 5 38 38 H 1.09005 * 109.47063 * 60.00381 * 17 16 14 39 39 H 1.09002 * 109.47161 * 300.00134 * 17 16 14 40 40 H 1.08010 * 120.05449 * 0.02562 * 21 20 19 41 41 H 1.08000 * 119.66738 * 180.29845 * 22 21 20 42 42 H 1.08005 * 119.77323 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.15375 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1844 0.0006 5 7 3.9767 0.5637 -1.2510 6 6 4.2055 -0.7871 -1.3028 7 1 3.9866 -1.3375 -2.2058 8 6 4.7190 -1.4478 -0.1936 9 7 5.3770 -0.7765 0.7248 10 14 4.4740 -3.2903 -0.0077 11 1 5.0936 -3.9909 -1.1613 12 1 5.1121 -3.7499 1.2520 13 1 3.0212 -3.5948 0.0341 14 6 4.1576 1.3206 -2.3513 15 8 3.9548 2.5156 -2.3055 16 6 4.6119 0.6822 -3.6386 17 6 4.7377 1.7542 -4.7230 18 6 5.1926 1.1159 -6.0101 19 7 6.2624 0.3875 -6.1434 20 6 6.3741 -0.0280 -7.4313 21 6 7.3073 -0.8135 -8.1131 22 6 7.1401 -1.0672 -9.4448 23 6 6.0532 -0.5473 -10.1335 24 6 5.1229 0.2345 -9.4827 25 6 5.2763 0.5030 -8.1292 26 7 4.5509 1.2271 -7.2045 27 1 3.7300 1.7158 -7.3727 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6888 1.8463 0.8900 32 1 1.6888 1.8464 -0.8899 33 1 3.8509 0.5683 0.8426 34 1 3.9787 2.1763 0.0902 35 1 5.7352 -1.2377 1.4993 36 1 3.8828 -0.0657 -3.9504 37 1 5.5796 0.2044 -3.4856 38 1 5.4666 2.5024 -4.4114 39 1 3.7697 2.2316 -4.8759 40 1 8.1568 -1.2233 -7.5868 41 1 7.8609 -1.6787 -9.9671 42 1 5.9354 -0.7568 -11.1865 43 1 4.2785 0.6363 -10.0233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457185984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:42 Heat of formation + Delta-G solvation = -8.866173 kcal Electronic energy + Delta-G solvation = -26010.561338 eV Core-core repulsion = 22249.716808 eV Total energy + Delta-G solvation = -3760.844530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05092 -38.73109 -37.40956 -36.94329 -34.75416 -33.17514 -32.76469 -31.53700 -29.98553 -29.55291 -28.44663 -25.89730 -25.10952 -24.33043 -22.40198 -22.06888 -21.59300 -20.32043 -18.97010 -17.80328 -17.26098 -16.75900 -16.20936 -15.49562 -15.40762 -15.24652 -15.04606 -14.55323 -14.33921 -14.29365 -14.21182 -13.97957 -13.78590 -13.12636 -12.71629 -12.23390 -12.03362 -11.98231 -11.92957 -11.52944 -11.45405 -11.32567 -11.13251 -11.07851 -10.95242 -10.64714 -10.57158 -10.42800 -10.33104 -9.99976 -9.79796 -9.11306 -8.94929 -8.45894 -8.34747 -8.04651 -7.49381 -6.30013 -3.93687 0.97219 1.51776 2.86037 2.93346 3.22997 3.29844 3.34963 3.90273 3.91064 4.20252 4.25574 4.51028 4.58590 4.81310 4.96650 5.07103 5.14850 5.27914 5.40747 5.45455 5.61805 5.64943 5.68265 5.71540 5.75751 5.96139 5.99044 6.04048 6.06625 6.09852 6.33985 6.37933 6.44113 6.47969 6.54352 6.55644 6.72399 6.80041 6.91146 7.31508 7.38073 7.53415 7.82484 8.01284 8.03893 8.42109 9.16116 9.54501 9.95981 10.72971 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.003292 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.857328 B = 8502.312493 C = 9383.679030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.424 5.424 6 C -0.325 4.325 7 H 0.088 0.912 8 C 0.051 3.949 9 N -0.862 5.862 10 Si 0.913 3.087 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.465 3.535 15 O -0.617 6.617 16 C -0.107 4.107 17 C -0.026 4.026 18 C 0.304 3.696 19 N -0.487 5.487 20 C 0.051 3.949 21 C -0.065 4.065 22 C -0.132 4.132 23 C -0.110 4.110 24 C -0.112 4.112 25 C 0.039 3.961 26 N -0.601 5.601 27 H 0.421 0.579 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.269 0.731 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 1.077 -13.978 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.141 5.141 6 C -0.453 4.453 7 H 0.106 0.894 8 C -0.155 4.155 9 N -0.499 5.499 10 Si 0.740 3.260 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.254 3.746 15 O -0.505 6.505 16 C -0.148 4.148 17 C -0.066 4.066 18 C 0.037 3.963 19 N -0.207 5.207 20 C -0.067 4.067 21 C -0.084 4.084 22 C -0.153 4.153 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.071 4.071 26 N -0.212 5.212 27 H 0.260 0.740 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.696 1.194 -13.095 13.423 hybrid contribution -1.448 -0.368 -0.531 1.586 sum -4.144 0.827 -13.626 14.266 Atomic orbital electron populations 1.22639 0.83510 1.01693 0.98781 1.88144 1.17295 1.27795 1.95026 1.23037 0.96652 0.84247 0.98577 1.21492 0.89060 0.99110 0.91467 1.43329 1.55738 1.07372 1.07648 1.19260 1.42452 0.82013 1.01552 0.89446 1.25201 0.93881 0.99852 0.96557 1.69894 1.31011 1.37236 1.11773 0.86226 0.78912 0.83224 0.77657 1.19916 1.21107 1.19694 1.20263 0.81446 0.86250 0.86592 1.90504 1.58451 1.15323 1.86238 1.21218 1.04360 0.97128 0.92052 1.20021 1.02456 0.97908 0.86185 1.23995 0.88937 0.95416 0.87976 1.70520 1.17996 1.15382 1.16840 1.19206 0.95943 1.01334 0.90252 1.20057 0.97835 0.96834 0.93694 1.20601 0.98850 1.01847 0.93988 1.20815 0.94509 0.98077 0.99598 1.19918 1.00976 1.02001 0.90353 1.18916 0.95870 0.99710 0.92561 1.43193 1.24979 1.44675 1.08363 0.74018 0.95061 0.90474 0.95176 0.94362 0.94129 0.86554 0.91250 0.92074 0.90481 0.87995 0.87985 0.89759 0.85347 0.85594 0.85593 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.77 10.44 -35.23 -0.37 -8.14 16 3 C 0.05 1.09 6.24 37.16 0.23 1.32 16 4 C 0.11 2.68 5.29 -4.04 -0.02 2.66 16 5 N -0.42 -10.58 2.51 -114.81 -0.29 -10.87 16 6 C -0.33 -8.32 8.48 -14.93 -0.13 -8.45 16 7 H 0.09 2.18 6.98 -52.49 -0.37 1.82 16 8 C 0.05 1.30 4.93 -17.47 -0.09 1.21 16 9 N -0.86 -22.94 11.34 55.50 0.63 -22.31 16 10 Si 0.91 20.31 29.61 -169.99 -5.03 15.28 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 14 C 0.47 10.95 7.60 -10.98 -0.08 10.87 16 15 O -0.62 -15.28 15.65 5.55 0.09 -15.19 16 16 C -0.11 -2.12 4.30 -27.88 -0.12 -2.24 16 17 C -0.03 -0.43 5.13 -27.88 -0.14 -0.57 16 18 C 0.30 4.84 7.37 -154.82 -1.14 3.70 16 19 N -0.49 -8.80 11.21 -8.23 -0.09 -8.89 16 20 C 0.05 0.83 7.23 -84.70 -0.61 0.21 16 21 C -0.06 -0.87 10.05 -39.61 -0.40 -1.27 16 22 C -0.13 -1.41 9.96 -39.98 -0.40 -1.81 16 23 C -0.11 -1.09 10.03 -39.52 -0.40 -1.49 16 24 C -0.11 -1.23 10.07 -39.50 -0.40 -1.63 16 25 C 0.04 0.55 7.30 -83.99 -0.61 -0.07 16 26 N -0.60 -7.82 6.23 -8.00 -0.05 -7.87 16 27 H 0.42 3.99 8.96 -40.82 -0.37 3.62 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.12 2.98 5.37 -51.93 -0.28 2.70 16 34 H 0.07 1.65 7.59 -51.93 -0.39 1.26 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.08 1.48 7.65 -51.93 -0.40 1.08 16 37 H 0.10 2.17 8.10 -51.93 -0.42 1.75 16 38 H 0.10 1.74 8.10 -51.93 -0.42 1.32 16 39 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -31.80 365.39 -8.81 -40.60 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.00 Total: 7.83 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.19 Total: 4.06 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.20 Total: -49.95 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.28 Total: -23.33 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.80 -8.81 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.737 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds